Wall clock time and date at job start Tue Mar 31 2020 02:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 110.05915 * 2 1 4 4 C 1.54264 * 110.02893 * 238.58293 * 2 1 3 5 5 C 1.54890 * 104.19841 * 264.32868 * 4 2 1 6 6 C 1.54898 * 102.74417 * 322.05770 * 5 4 2 7 7 C 1.53874 * 110.02988 * 121.42189 * 2 1 3 8 8 C 1.53002 * 110.02737 * 238.61392 * 7 2 1 9 9 C 1.50690 * 110.03415 * 359.97438 * 7 2 1 10 10 O 1.21284 * 120.00214 * 113.56594 * 9 7 2 11 11 N 1.34776 * 120.00669 * 293.56589 * 9 7 2 12 12 C 1.46502 * 119.99391 * 355.45116 * 11 9 7 13 13 C 1.46492 * 120.00419 * 175.45432 * 11 9 7 14 14 C 1.53503 * 114.20501 * 239.99807 * 13 11 9 15 15 N 1.47073 * 87.98629 * 220.14662 * 14 13 11 16 16 C 1.36937 * 136.05755 * 207.08622 * 15 14 13 17 17 H 1.07998 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99840 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99938 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99956 * 179.72285 * 18 16 15 21 21 H 1.48500 * 109.46810 * 59.99723 * 20 18 16 22 22 H 1.48496 * 109.47257 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46814 * 300.00200 * 20 18 16 24 24 C 1.47070 * 87.88359 * 27.34054 * 15 14 13 25 25 H 1.09001 * 109.47115 * 307.10659 * 1 2 3 26 26 H 1.09000 * 109.47133 * 67.10261 * 1 2 3 27 27 H 1.08999 * 109.47416 * 187.10511 * 1 2 3 28 28 H 1.08999 * 110.49037 * 23.00380 * 4 2 1 29 29 H 1.09000 * 110.48942 * 145.65186 * 4 2 1 30 30 H 1.08999 * 110.75909 * 80.37199 * 5 4 2 31 31 H 1.08997 * 110.75715 * 203.74464 * 5 4 2 32 32 H 1.09001 * 110.48688 * 279.25985 * 6 5 4 33 33 H 1.09007 * 110.48259 * 156.62009 * 6 5 4 34 34 H 1.08999 * 109.47366 * 171.41473 * 8 7 2 35 35 H 1.09001 * 109.47303 * 291.40989 * 8 7 2 36 36 H 1.09001 * 109.47498 * 51.41217 * 8 7 2 37 37 H 1.09001 * 109.47297 * 275.31496 * 12 11 9 38 38 H 1.08993 * 109.47257 * 35.32187 * 12 11 9 39 39 H 1.09007 * 109.46932 * 155.32308 * 12 11 9 40 40 H 1.09001 * 113.28443 * 13.06760 * 13 11 9 41 41 H 1.08995 * 113.46840 * 105.36990 * 14 13 11 42 42 H 1.08995 * 113.52021 * 334.93790 * 14 13 11 43 43 H 0.97001 * 119.99956 * 179.97438 * 19 18 16 44 44 H 1.09001 * 113.46469 * 87.43736 * 24 15 14 45 45 H 1.08998 * 113.46671 * 217.87502 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0583 -0.7555 -1.2369 5 6 2.3279 -2.1902 -0.7192 6 6 2.8874 -1.9407 0.7035 7 6 2.0570 -0.7537 1.2337 8 6 2.9399 0.1706 2.0747 9 6 0.9038 -1.2588 2.0617 10 8 0.7095 -2.4513 2.1673 11 7 0.0880 -0.3855 2.6849 12 6 0.3799 1.0495 2.6400 13 6 -1.0903 -0.8711 3.4072 14 6 -2.4226 -0.3189 2.8814 15 7 -2.8639 -0.1966 4.2790 16 6 -4.0638 -0.2092 4.9388 17 1 -4.9828 -0.3356 4.3858 18 6 -4.0988 -0.0594 6.3184 19 7 -2.9787 0.0941 6.9923 20 14 -5.7361 -0.0688 7.2176 21 1 -6.4241 -1.3631 6.9796 22 1 -5.5023 0.1065 8.6735 23 1 -6.5835 1.0420 6.7145 24 6 -1.4499 -0.0483 4.6554 25 1 -0.3633 0.6200 0.8196 26 1 -0.3633 0.3998 -0.9467 27 1 -0.3634 -1.0197 0.1271 28 1 1.3060 -0.7696 -2.0255 29 1 2.9810 -0.3002 -1.5967 30 1 1.4029 -2.7652 -0.6752 31 1 3.0673 -2.6932 -1.3424 32 1 3.9439 -1.6768 0.6571 33 1 2.7400 -2.8198 1.3309 34 1 3.1832 -0.3186 3.0179 35 1 3.8590 0.3889 1.5310 36 1 2.4065 1.0999 2.2745 37 1 1.0883 1.3011 3.4292 38 1 0.8103 1.3025 1.6711 39 1 -0.5420 1.6125 2.7863 40 1 -1.0846 -1.9496 3.5653 41 1 -2.9971 -1.0455 2.3069 42 1 -2.3253 0.6394 2.3714 43 1 -3.0032 0.1992 7.9563 44 1 -1.0953 0.9815 4.6133 45 1 -1.1958 -0.5443 5.5921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043772639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:49 Heat of formation + Delta-G solvation = 39.443080 kcal Electronic energy + Delta-G solvation = -23795.675999 eV Core-core repulsion = 20622.863743 eV Total energy + Delta-G solvation = -3172.812256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11265 -38.44600 -36.90347 -34.83271 -32.21296 -31.50441 -30.80992 -27.63956 -26.99929 -26.33163 -24.62161 -24.11495 -23.48410 -21.47712 -20.35558 -18.87802 -18.37224 -16.88875 -16.46171 -16.12379 -15.60240 -15.20935 -14.85816 -14.34543 -13.98261 -13.84021 -13.49234 -13.30019 -12.93106 -12.72397 -12.37001 -12.20642 -12.05429 -11.87741 -11.53510 -11.48210 -11.31038 -11.29158 -10.95444 -10.86676 -10.76334 -10.74136 -10.58260 -10.52732 -10.43988 -10.17967 -10.09368 -9.44754 -9.23401 -8.83330 -8.03011 -6.92614 -5.80217 -3.13394 2.95288 3.31694 3.39845 3.43490 3.44753 4.37357 4.43228 4.45862 4.54764 4.96153 5.13896 5.21103 5.27021 5.28675 5.33321 5.37265 5.43871 5.45515 5.49680 5.55369 5.65218 5.70153 5.73081 5.82874 5.84274 5.89129 5.98135 6.03804 6.04507 6.10233 6.17970 6.20322 6.23595 6.35787 6.40210 6.44638 6.58484 6.82079 7.16792 7.35069 7.50663 7.83695 7.93526 8.54939 8.99913 9.66399 10.58342 11.37212 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037704 B = 0.004136 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.454811 B = 6767.402113 C = 6862.157486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 H 0.079 0.921 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.106 4.106 7 C -0.082 4.082 8 C -0.155 4.155 9 C 0.531 3.469 10 O -0.546 6.546 11 N -0.595 5.595 12 C 0.062 3.938 13 C 0.087 3.913 14 C 0.107 3.893 15 N -0.603 5.603 16 C -0.219 4.219 17 H 0.082 0.918 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.285 1.285 24 C 0.149 3.851 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.033 0.967 43 H 0.255 0.745 44 H 0.030 0.970 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.302 2.332 -14.629 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.101 4.101 3 H 0.097 0.903 4 C -0.156 4.156 5 C -0.160 4.160 6 C -0.144 4.144 7 C -0.085 4.085 8 C -0.213 4.213 9 C 0.319 3.681 10 O -0.423 6.423 11 N -0.327 5.327 12 C -0.080 4.080 13 C -0.017 4.017 14 C -0.020 4.020 15 N -0.329 5.329 16 C -0.346 4.346 17 H 0.100 0.900 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.022 3.978 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.135 0.865 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.938 1.725 -14.237 19.315 hybrid contribution -0.902 0.283 0.579 1.109 sum 12.036 2.008 -13.658 18.314 Atomic orbital electron populations 1.22538 0.94361 1.03276 1.02786 1.21763 0.96321 0.98875 0.93092 0.90320 1.22440 1.00584 0.95734 0.96850 1.22470 1.01140 0.96577 0.95850 1.22359 0.97811 0.97592 0.96649 1.21483 0.94544 0.97197 0.95307 1.22321 0.99386 0.99754 0.99791 1.20278 0.82811 0.86149 0.78872 1.90646 1.72909 1.15977 1.62791 1.47862 1.26138 1.06589 1.52113 1.22304 1.02259 0.81768 1.01702 1.23754 0.82389 1.00539 0.94995 1.22816 0.92456 0.97199 0.89558 1.45253 1.02255 1.84346 1.01056 1.18863 0.82769 1.43672 0.89326 0.89979 1.24812 0.97378 1.01980 0.96095 1.69817 1.24839 1.55092 1.06831 0.86151 0.82593 0.77989 0.78739 1.20950 1.21487 1.21109 1.22520 0.84133 0.95721 0.95418 0.90065 0.92741 0.92214 0.91543 0.91671 0.91193 0.91753 0.91348 0.89904 0.92148 0.91869 0.90464 0.92394 0.90116 0.90383 0.86468 0.94056 0.94942 0.93495 0.95264 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 7.57 37.16 0.28 -1.76 16 2 C -0.08 -0.84 2.21 -89.50 -0.20 -1.03 16 3 H 0.08 0.67 7.19 -51.93 -0.37 0.30 16 4 C -0.12 -1.10 6.37 -25.07 -0.16 -1.26 16 5 C -0.12 -1.30 6.91 -24.73 -0.17 -1.47 16 6 C -0.11 -1.23 5.68 -25.07 -0.14 -1.37 16 7 C -0.08 -0.98 0.62 -154.55 -0.10 -1.07 16 8 C -0.16 -1.55 7.56 37.16 0.28 -1.27 16 9 C 0.53 8.54 4.58 -10.99 -0.05 8.49 16 10 O -0.55 -10.86 14.92 5.55 0.08 -10.77 16 11 N -0.60 -9.58 2.22 -173.55 -0.39 -9.97 16 12 C 0.06 0.79 5.70 59.85 0.34 1.14 16 13 C 0.09 1.75 4.59 -67.67 -0.31 1.44 16 14 C 0.11 2.25 8.23 -8.49 -0.07 2.18 16 15 N -0.60 -15.65 3.78 -184.58 -0.70 -16.35 16 16 C -0.22 -6.19 10.75 -15.06 -0.16 -6.36 16 17 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 19 N -0.92 -27.31 11.50 55.49 0.64 -26.68 16 20 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.15 3.50 6.82 -8.36 -0.06 3.44 16 25 H 0.08 1.00 4.04 -51.93 -0.21 0.79 16 26 H 0.05 0.56 8.06 -51.93 -0.42 0.14 16 27 H 0.06 0.86 7.03 -51.93 -0.36 0.50 16 28 H 0.07 0.60 7.78 -51.93 -0.40 0.19 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 33 H 0.08 1.15 6.89 -51.92 -0.36 0.79 16 34 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 35 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 36 H 0.08 0.70 4.32 -51.93 -0.22 0.48 16 37 H 0.06 0.69 7.09 -51.93 -0.37 0.32 16 38 H 0.08 0.82 3.24 -51.93 -0.17 0.66 16 39 H 0.08 1.07 5.97 -51.92 -0.31 0.76 16 40 H 0.12 2.63 7.26 -51.93 -0.38 2.25 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.64 7.05 -51.93 -0.37 0.27 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.03 0.67 6.44 -51.93 -0.33 0.34 16 45 H 0.07 1.98 7.11 -51.93 -0.37 1.61 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -32.04 328.27 -8.16 -40.20 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.11 Total: 0.64 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.61 Total: 0.85 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.45 Total: -53.00 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.04 -8.16 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043772639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.644 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds