Wall clock time and date at job start Tue Mar 31 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 110.05915 * 2 1 4 4 C 1.54264 * 110.02893 * 238.58293 * 2 1 3 5 5 C 1.54890 * 104.19841 * 264.32868 * 4 2 1 6 6 C 1.54898 * 102.74417 * 322.05770 * 5 4 2 7 7 C 1.53874 * 110.02988 * 121.42189 * 2 1 3 8 8 C 1.53002 * 110.02737 * 238.61392 * 7 2 1 9 9 C 1.50690 * 110.03415 * 359.97438 * 7 2 1 10 10 O 1.21284 * 120.00214 * 113.56594 * 9 7 2 11 11 N 1.34776 * 120.00669 * 293.56589 * 9 7 2 12 12 C 1.46502 * 119.99391 * 355.45116 * 11 9 7 13 13 C 1.46492 * 120.00419 * 175.45432 * 11 9 7 14 14 C 1.53503 * 114.20501 * 239.99807 * 13 11 9 15 15 N 1.47073 * 87.98629 * 220.14662 * 14 13 11 16 16 C 1.36937 * 136.05755 * 207.08622 * 15 14 13 17 17 H 1.07998 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99840 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99938 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99956 * 179.72285 * 18 16 15 21 21 H 1.48500 * 109.46810 * 59.99723 * 20 18 16 22 22 H 1.48496 * 109.47257 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46814 * 300.00200 * 20 18 16 24 24 C 1.47070 * 87.88359 * 27.34054 * 15 14 13 25 25 H 1.09001 * 109.47115 * 307.10659 * 1 2 3 26 26 H 1.09000 * 109.47133 * 67.10261 * 1 2 3 27 27 H 1.08999 * 109.47416 * 187.10511 * 1 2 3 28 28 H 1.08999 * 110.49037 * 23.00380 * 4 2 1 29 29 H 1.09000 * 110.48942 * 145.65186 * 4 2 1 30 30 H 1.08999 * 110.75909 * 80.37199 * 5 4 2 31 31 H 1.08997 * 110.75715 * 203.74464 * 5 4 2 32 32 H 1.09001 * 110.48688 * 279.25985 * 6 5 4 33 33 H 1.09007 * 110.48259 * 156.62009 * 6 5 4 34 34 H 1.08999 * 109.47366 * 171.41473 * 8 7 2 35 35 H 1.09001 * 109.47303 * 291.40989 * 8 7 2 36 36 H 1.09001 * 109.47498 * 51.41217 * 8 7 2 37 37 H 1.09001 * 109.47297 * 275.31496 * 12 11 9 38 38 H 1.08993 * 109.47257 * 35.32187 * 12 11 9 39 39 H 1.09007 * 109.46932 * 155.32308 * 12 11 9 40 40 H 1.09001 * 113.28443 * 13.06760 * 13 11 9 41 41 H 1.08995 * 113.46840 * 105.36990 * 14 13 11 42 42 H 1.08995 * 113.52021 * 334.93790 * 14 13 11 43 43 H 0.97001 * 119.99956 * 179.97438 * 19 18 16 44 44 H 1.09001 * 113.46469 * 87.43736 * 24 15 14 45 45 H 1.08998 * 113.46671 * 217.87502 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0583 -0.7555 -1.2369 5 6 2.3279 -2.1902 -0.7192 6 6 2.8874 -1.9407 0.7035 7 6 2.0570 -0.7537 1.2337 8 6 2.9399 0.1706 2.0747 9 6 0.9038 -1.2588 2.0617 10 8 0.7095 -2.4513 2.1673 11 7 0.0880 -0.3855 2.6849 12 6 0.3799 1.0495 2.6400 13 6 -1.0903 -0.8711 3.4072 14 6 -2.4226 -0.3189 2.8814 15 7 -2.8639 -0.1966 4.2790 16 6 -4.0638 -0.2092 4.9388 17 1 -4.9828 -0.3356 4.3858 18 6 -4.0988 -0.0594 6.3184 19 7 -2.9787 0.0941 6.9923 20 14 -5.7361 -0.0688 7.2176 21 1 -6.4241 -1.3631 6.9796 22 1 -5.5023 0.1065 8.6735 23 1 -6.5835 1.0420 6.7145 24 6 -1.4499 -0.0483 4.6554 25 1 -0.3633 0.6200 0.8196 26 1 -0.3633 0.3998 -0.9467 27 1 -0.3634 -1.0197 0.1271 28 1 1.3060 -0.7696 -2.0255 29 1 2.9810 -0.3002 -1.5967 30 1 1.4029 -2.7652 -0.6752 31 1 3.0673 -2.6932 -1.3424 32 1 3.9439 -1.6768 0.6571 33 1 2.7400 -2.8198 1.3309 34 1 3.1832 -0.3186 3.0179 35 1 3.8590 0.3889 1.5310 36 1 2.4065 1.0999 2.2745 37 1 1.0883 1.3011 3.4292 38 1 0.8103 1.3025 1.6711 39 1 -0.5420 1.6125 2.7863 40 1 -1.0846 -1.9496 3.5653 41 1 -2.9971 -1.0455 2.3069 42 1 -2.3253 0.6394 2.3714 43 1 -3.0032 0.1992 7.9563 44 1 -1.0953 0.9815 4.6133 45 1 -1.1958 -0.5443 5.5921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043772639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:48 Heat of formation + Delta-G solvation = 19.884229 kcal Electronic energy + Delta-G solvation = -23796.524135 eV Core-core repulsion = 20622.863743 eV Total energy + Delta-G solvation = -3173.660392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.28730 -40.02520 -38.18255 -36.24166 -34.17380 -32.43824 -31.86430 -29.52477 -28.20512 -27.20875 -26.43520 -25.61640 -24.63195 -22.91688 -21.23955 -20.45935 -19.62892 -18.79558 -17.78193 -17.43878 -16.85111 -16.55467 -16.40045 -15.75254 -15.56000 -15.04033 -14.59145 -14.37650 -14.25719 -13.90615 -13.71438 -13.41893 -13.29720 -13.17925 -13.09128 -13.00463 -12.81472 -12.63702 -12.51006 -12.25013 -12.09981 -11.97777 -11.77056 -11.59934 -11.43476 -11.39573 -11.34415 -11.27070 -10.90704 -10.53509 -9.48514 -8.99553 -7.95649 -5.30744 1.44395 1.48617 1.54710 1.68363 1.99461 2.47172 3.25895 3.39197 3.47858 3.57424 3.64657 3.77749 4.03766 4.22445 4.29102 4.34618 4.39491 4.41543 4.46011 4.53894 4.61774 4.63104 4.65248 4.73756 4.80857 4.83246 4.92468 4.99257 5.01753 5.10910 5.13724 5.15075 5.20054 5.23309 5.24242 5.36721 5.37520 5.41751 5.48456 5.54381 5.71719 5.85823 6.53085 6.84487 7.24670 7.53299 8.51910 9.21720 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037704 B = 0.004136 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.454811 B = 6767.402113 C = 6862.157486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 H 0.113 0.887 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.108 4.108 7 C -0.078 4.078 8 C -0.154 4.154 9 C 0.525 3.475 10 O -0.594 6.594 11 N -0.594 5.594 12 C 0.058 3.942 13 C 0.112 3.888 14 C 0.117 3.883 15 N -0.635 5.635 16 C -0.235 4.235 17 H 0.087 0.913 18 C -0.063 4.063 19 N -0.952 5.952 20 Si 0.985 3.015 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.273 1.273 24 C 0.155 3.845 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.251 0.749 44 H 0.042 0.958 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.546 4.459 -16.731 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.098 4.098 3 H 0.131 0.869 4 C -0.149 4.149 5 C -0.162 4.162 6 C -0.146 4.146 7 C -0.081 4.081 8 C -0.211 4.211 9 C 0.316 3.684 10 O -0.474 6.474 11 N -0.325 5.325 12 C -0.083 4.083 13 C 0.006 3.994 14 C -0.010 4.010 15 N -0.362 5.362 16 C -0.363 4.363 17 H 0.105 0.895 18 C -0.256 4.256 19 N -0.600 5.600 20 Si 0.812 3.188 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.198 1.198 24 C 0.028 3.972 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.201 3.877 -16.385 22.026 hybrid contribution -1.253 -0.442 1.180 1.777 sum 12.948 3.434 -15.205 20.264 Atomic orbital electron populations 1.22515 0.95834 1.00966 1.03530 1.21855 0.94975 1.00522 0.92429 0.86909 1.22444 1.01954 0.94202 0.96284 1.22465 1.00163 0.97781 0.95821 1.22400 0.99439 0.96224 0.96525 1.21572 0.92898 0.98019 0.95599 1.22359 1.00357 0.99312 0.99066 1.21203 0.83366 0.85437 0.78390 1.90626 1.74206 1.18261 1.64334 1.47835 1.24850 1.08327 1.51451 1.22576 1.02483 0.79109 1.04157 1.22981 0.84312 0.98345 0.93765 1.22869 0.92226 0.98227 0.87666 1.45549 1.02459 1.84777 1.03387 1.19275 0.83973 1.43013 0.90025 0.89512 1.25693 1.00908 1.02164 0.96872 1.70013 1.26929 1.56454 1.06607 0.85069 0.78474 0.78323 0.76951 1.20334 1.21815 1.19845 1.22419 0.83582 0.96274 0.94896 0.90637 0.90925 0.95756 0.91194 0.88860 0.94333 0.89912 0.88480 0.93296 0.93742 0.88779 0.89218 0.91116 0.86696 0.91126 0.89539 0.94186 0.92244 0.94064 0.94090 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 7.57 71.98 0.54 -3.13 16 2 C -0.08 -1.33 2.21 -10.07 -0.02 -1.35 16 3 H 0.11 1.22 7.19 -2.39 -0.02 1.21 16 4 C -0.11 -1.64 6.37 31.67 0.20 -1.44 16 5 C -0.12 -2.44 6.91 31.89 0.22 -2.22 16 6 C -0.11 -2.34 5.68 31.67 0.18 -2.16 16 7 C -0.08 -1.69 0.62 -52.21 -0.03 -1.72 16 8 C -0.15 -2.53 7.56 71.98 0.54 -1.98 16 9 C 0.53 17.04 4.58 87.65 0.40 17.44 16 10 O -0.59 -24.96 14.92 -3.04 -0.05 -25.00 16 11 N -0.59 -19.03 2.22 -821.38 -1.83 -20.86 16 12 C 0.06 1.34 5.70 127.77 0.73 2.07 16 13 C 0.11 4.66 4.59 45.55 0.21 4.86 16 14 C 0.12 4.94 8.23 83.18 0.68 5.63 16 15 N -0.64 -33.72 3.78 -737.89 -2.79 -36.51 16 16 C -0.24 -13.51 10.75 84.03 0.90 -12.60 16 17 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 18 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 19 N -0.95 -58.19 11.50 21.65 0.25 -57.94 16 20 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 C 0.15 7.53 6.82 83.27 0.57 8.10 16 25 H 0.08 1.67 4.04 -2.39 -0.01 1.67 16 26 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 27 H 0.02 0.68 7.03 -2.39 -0.02 0.67 16 28 H 0.07 1.02 7.78 -2.39 -0.02 1.00 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.54 7.70 -2.39 -0.02 1.52 16 33 H 0.05 1.40 6.89 -2.38 -0.02 1.38 16 34 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 35 H 0.09 1.02 7.91 -2.39 -0.02 1.00 16 36 H 0.09 1.23 4.32 -2.39 -0.01 1.22 16 37 H 0.07 1.51 7.09 -2.39 -0.02 1.49 16 38 H 0.12 1.90 3.24 -2.39 -0.01 1.89 16 39 H 0.07 1.79 5.97 -2.38 -0.01 1.78 16 40 H 0.09 4.16 7.26 -2.39 -0.02 4.14 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 42 H 0.06 2.24 7.05 -2.39 -0.02 2.23 16 43 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.04 1.89 6.44 -2.39 -0.02 1.88 16 45 H 0.03 1.91 7.11 -2.39 -0.02 1.89 16 Total: -1.00 -73.70 328.27 4.19 -69.50 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.98 Total: 14.37 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.60 Total: 8.32 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -4.37 Total: -115.31 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.00 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.70 4.19 -69.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043772639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.389 kcal (2) G-P(sol) polarization free energy of solvation -73.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds