Wall clock time and date at job start Tue Mar 31 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.01826 * 2 1 4 4 C 1.54266 * 110.03227 * 121.44305 * 2 1 3 5 5 C 1.54890 * 104.20052 * 142.89430 * 4 2 1 6 6 C 1.54895 * 102.74693 * 322.05724 * 5 4 2 7 7 C 1.53883 * 110.03362 * 238.60427 * 2 1 3 8 8 C 1.53001 * 110.02681 * 121.38167 * 7 2 1 9 9 C 1.50700 * 110.02893 * 0.02562 * 7 2 1 10 10 O 1.21279 * 120.00229 * 348.89517 * 9 7 2 11 11 N 1.34781 * 119.99593 * 168.89107 * 9 7 2 12 12 C 1.46498 * 120.00131 * 6.17705 * 11 9 7 13 13 C 1.46492 * 119.99850 * 186.17359 * 11 9 7 14 14 C 1.53495 * 114.20889 * 240.00440 * 13 11 9 15 15 N 1.47074 * 88.05093 * 220.37423 * 14 13 11 16 16 C 1.36927 * 136.06156 * 207.05343 * 15 14 13 17 17 H 1.08008 * 119.99977 * 355.27145 * 16 15 14 18 18 C 1.38813 * 120.00625 * 175.26735 * 16 15 14 19 19 N 1.31618 * 119.99486 * 5.37413 * 18 16 15 20 20 Si 1.86794 * 120.00601 * 185.36774 * 18 16 15 21 21 H 1.48502 * 109.46990 * 94.99773 * 20 18 16 22 22 H 1.48496 * 109.47266 * 215.00040 * 20 18 16 23 23 H 1.48499 * 109.46961 * 335.00147 * 20 18 16 24 24 C 1.47071 * 87.87929 * 27.08822 * 15 14 13 25 25 H 1.09005 * 109.47034 * 186.32166 * 1 2 3 26 26 H 1.08992 * 109.47344 * 306.32263 * 1 2 3 27 27 H 1.09002 * 109.46755 * 66.32712 * 1 2 3 28 28 H 1.09005 * 110.48425 * 261.57386 * 4 2 1 29 29 H 1.09003 * 110.48447 * 24.21570 * 4 2 1 30 30 H 1.08997 * 110.75072 * 80.36932 * 5 4 2 31 31 H 1.08996 * 110.75506 * 203.74759 * 5 4 2 32 32 H 1.09001 * 110.48254 * 279.26425 * 6 5 4 33 33 H 1.08996 * 110.48716 * 156.61518 * 6 5 4 34 34 H 1.08995 * 109.47421 * 299.31415 * 8 7 2 35 35 H 1.08999 * 109.47296 * 59.31547 * 8 7 2 36 36 H 1.09003 * 109.46831 * 179.31068 * 8 7 2 37 37 H 1.08995 * 109.46974 * 266.98933 * 12 11 9 38 38 H 1.09003 * 109.46836 * 26.98997 * 12 11 9 39 39 H 1.08997 * 109.47271 * 146.98402 * 12 11 9 40 40 H 1.08998 * 113.41402 * 13.20532 * 13 11 9 41 41 H 1.08997 * 113.47034 * 105.56708 * 14 13 11 42 42 H 1.08999 * 113.46892 * 335.18185 * 14 13 11 43 43 H 0.97001 * 120.00153 * 179.97438 * 19 18 16 44 44 H 1.09002 * 113.46837 * 87.66585 * 24 15 14 45 45 H 1.09005 * 113.46675 * 218.03681 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7560 1.2365 5 6 3.3137 -1.5011 0.7185 6 6 2.8875 -1.9405 -0.7043 7 6 2.0572 -0.7531 -1.2341 8 6 2.9399 0.1715 -2.0747 9 6 0.9038 -1.2579 -2.0623 10 8 -0.2237 -1.2226 -1.6171 11 7 1.1254 -1.7484 -3.2980 12 6 2.4971 -1.9170 -3.7840 13 6 -0.0054 -2.1130 -4.1549 14 6 -0.0251 -3.5886 -4.5771 15 7 -0.4501 -3.1483 -5.9145 16 6 -1.1678 -3.6877 -6.9483 17 1 -1.5047 -4.7125 -6.8950 18 6 -1.4624 -2.9176 -8.0650 19 7 -0.9635 -1.7049 -8.1783 20 14 -2.5666 -3.6023 -9.4071 21 1 -3.9644 -3.1595 -9.1719 22 1 -2.1058 -3.1059 -10.7286 23 1 -2.5075 -5.0860 -9.3876 24 6 0.2358 -1.8739 -5.6530 25 1 -0.3633 -1.0215 0.1132 26 1 -0.3633 0.6087 0.8279 27 1 -0.3633 0.4126 -0.9412 28 1 2.3297 -0.0545 2.0255 29 1 1.3142 -1.4667 1.5959 30 1 4.1709 -0.8294 0.6749 31 1 3.5324 -2.3685 1.3413 32 1 2.2772 -2.8424 -0.6583 33 1 3.7637 -2.1032 -1.3318 34 1 2.3533 1.0258 -2.4124 35 1 3.7775 0.5217 -1.4713 36 1 3.3180 -0.3742 -2.9392 37 1 2.8002 -1.0254 -4.3327 38 1 3.1666 -2.0678 -2.9372 39 1 2.5449 -2.7834 -4.4437 40 1 -0.9626 -1.7394 -3.7912 41 1 -0.7778 -4.1795 -4.0552 42 1 0.9594 -4.0563 -4.5666 43 1 -1.1691 -1.1668 -8.9587 44 1 1.2903 -1.8839 -5.9290 45 1 -0.2944 -1.0068 -6.0468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043772642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:51 Heat of formation + Delta-G solvation = 65.769111 kcal Electronic energy + Delta-G solvation = -23537.336025 eV Core-core repulsion = 20365.665351 eV Total energy + Delta-G solvation = -3171.670674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02541 -38.54411 -36.92311 -35.04081 -32.23075 -31.11142 -30.83773 -27.65271 -27.05064 -26.33354 -24.59534 -24.33320 -23.19326 -21.15254 -20.77922 -18.98653 -18.62334 -16.95866 -16.46364 -15.74829 -15.45412 -15.13097 -14.87903 -14.43075 -13.99046 -13.84494 -13.67182 -13.55472 -13.01765 -12.82169 -12.36088 -12.25597 -11.95241 -11.82399 -11.74548 -11.46760 -11.30161 -11.08174 -10.98258 -10.90854 -10.77647 -10.74664 -10.61336 -10.46855 -10.20515 -10.10960 -10.00392 -9.45323 -8.80576 -8.38369 -7.96017 -6.93025 -5.81310 -3.13825 2.89319 3.32772 3.39596 3.43927 3.45297 4.31843 4.44006 4.49001 4.59145 4.95603 5.13450 5.17504 5.23897 5.30913 5.32483 5.37106 5.44319 5.48391 5.54959 5.64227 5.66526 5.72486 5.76269 5.80007 5.84787 5.91568 5.99117 6.04177 6.09276 6.16773 6.20962 6.24514 6.31471 6.45165 6.52419 6.58159 6.77745 6.96119 7.16619 7.35902 7.49981 7.85502 7.93299 8.57197 8.99447 9.66030 10.58460 11.36351 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037819 B = 0.003945 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.184825 B = 7096.509100 C = 7238.025161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.078 4.078 3 H 0.071 0.929 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.079 4.079 8 C -0.163 4.163 9 C 0.513 3.487 10 O -0.528 6.528 11 N -0.595 5.595 12 C 0.067 3.933 13 C 0.088 3.912 14 C 0.107 3.893 15 N -0.604 5.604 16 C -0.219 4.219 17 H 0.083 0.917 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.915 3.085 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.147 3.853 25 H 0.079 0.921 26 H 0.012 0.988 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.042 0.958 42 H 0.033 0.967 43 H 0.254 0.746 44 H 0.028 0.972 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.390 2.962 16.194 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.097 4.097 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.149 4.149 7 C -0.082 4.082 8 C -0.219 4.219 9 C 0.302 3.698 10 O -0.406 6.406 11 N -0.327 5.327 12 C -0.076 4.076 13 C -0.015 4.015 14 C -0.020 4.020 15 N -0.330 5.330 16 C -0.346 4.346 17 H 0.101 0.899 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.745 3.255 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.020 3.980 25 H 0.098 0.902 26 H 0.031 0.969 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.612 2.960 16.049 19.467 hybrid contribution -0.346 -0.326 -0.994 1.101 sum 10.266 2.634 15.055 18.412 Atomic orbital electron populations 1.22355 0.92959 1.02751 0.99588 1.21740 0.97603 0.98212 0.92119 0.91062 1.22479 0.97113 0.98982 0.97119 1.22475 0.97867 0.99905 0.95739 1.22478 0.98963 0.96900 0.96517 1.21365 0.94412 0.96714 0.95743 1.22429 0.99243 0.99628 1.00641 1.20717 0.90285 0.77495 0.81298 1.90864 1.25678 1.55259 1.68816 1.48023 1.07051 1.62753 1.14859 1.22193 0.83118 1.02035 1.00262 1.23657 0.89605 0.97088 0.91197 1.22804 0.97224 0.94606 0.87406 1.45264 1.59369 1.14794 1.13539 1.18924 1.25281 0.96070 0.94305 0.89933 1.24823 1.00570 0.96443 0.98399 1.69832 1.47065 1.09773 1.29830 0.86060 0.80435 0.78033 0.80989 1.21419 1.21659 1.20536 1.22512 0.95581 0.92487 0.87392 0.90223 0.96937 0.91454 0.91831 0.91347 0.91403 0.91492 0.91121 0.90661 0.92212 0.91943 0.89834 0.92191 0.90588 0.90925 0.86558 0.93987 0.94955 0.93564 0.95397 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 7.33 37.16 0.27 -1.43 16 2 C -0.08 -0.90 3.16 -89.50 -0.28 -1.18 16 3 H 0.07 0.76 7.67 -51.93 -0.40 0.37 16 4 C -0.12 -1.15 6.36 -25.07 -0.16 -1.31 16 5 C -0.12 -1.03 6.91 -24.73 -0.17 -1.20 16 6 C -0.11 -1.09 4.90 -25.07 -0.12 -1.22 16 7 C -0.08 -0.93 0.61 -154.54 -0.09 -1.02 16 8 C -0.16 -1.64 7.72 37.16 0.29 -1.36 16 9 C 0.51 8.05 6.08 -10.98 -0.07 7.99 16 10 O -0.53 -9.81 10.21 5.56 0.06 -9.75 16 11 N -0.59 -9.57 3.10 -173.60 -0.54 -10.11 16 12 C 0.07 0.85 7.17 59.85 0.43 1.28 16 13 C 0.09 1.78 4.54 -67.70 -0.31 1.47 16 14 C 0.11 2.28 8.25 -8.51 -0.07 2.21 16 15 N -0.60 -15.73 3.78 -184.58 -0.70 -16.43 16 16 C -0.22 -6.20 10.74 -15.06 -0.16 -6.36 16 17 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -27.27 11.49 55.49 0.64 -26.64 16 20 Si 0.91 22.18 29.56 -169.99 -5.02 17.15 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.15 3.45 6.89 -8.45 -0.06 3.39 16 25 H 0.08 1.27 6.18 -52.43 -0.32 0.94 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.07 1.11 6.29 -51.89 -0.33 0.78 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.71 7.76 -51.93 -0.40 0.31 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 33 H 0.07 0.62 6.30 -51.93 -0.33 0.30 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.80 3.63 -51.93 -0.19 0.61 16 37 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 38 H 0.08 0.76 3.67 -51.93 -0.19 0.57 16 39 H 0.07 1.00 6.31 -51.93 -0.33 0.67 16 40 H 0.12 2.57 7.36 -51.93 -0.38 2.19 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.65 6.93 -51.93 -0.36 0.29 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.03 0.64 6.63 -51.93 -0.34 0.30 16 45 H 0.08 2.00 7.04 -51.93 -0.37 1.63 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -31.45 329.31 -8.42 -39.87 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.21 Total: -0.07 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.60 Total: 1.01 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.60 Total: -53.17 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.06 Total: -9.75 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.45 -8.42 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043772642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.638 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds