Wall clock time and date at job start Tue Mar 31 2020 02:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.01826 * 2 1 4 4 C 1.54266 * 110.03227 * 121.44305 * 2 1 3 5 5 C 1.54890 * 104.20052 * 142.89430 * 4 2 1 6 6 C 1.54895 * 102.74693 * 322.05724 * 5 4 2 7 7 C 1.53883 * 110.03362 * 238.60427 * 2 1 3 8 8 C 1.53001 * 110.02681 * 121.38167 * 7 2 1 9 9 C 1.50700 * 110.02893 * 0.02562 * 7 2 1 10 10 O 1.21279 * 120.00229 * 348.89517 * 9 7 2 11 11 N 1.34781 * 119.99593 * 168.89107 * 9 7 2 12 12 C 1.46498 * 120.00131 * 6.17705 * 11 9 7 13 13 C 1.46492 * 119.99850 * 186.17359 * 11 9 7 14 14 C 1.53495 * 114.20889 * 240.00440 * 13 11 9 15 15 N 1.47074 * 88.05093 * 220.37423 * 14 13 11 16 16 C 1.36927 * 136.06156 * 207.05343 * 15 14 13 17 17 H 1.08008 * 119.99977 * 355.27145 * 16 15 14 18 18 C 1.38813 * 120.00625 * 175.26735 * 16 15 14 19 19 N 1.31618 * 119.99486 * 5.37413 * 18 16 15 20 20 Si 1.86794 * 120.00601 * 185.36774 * 18 16 15 21 21 H 1.48502 * 109.46990 * 94.99773 * 20 18 16 22 22 H 1.48496 * 109.47266 * 215.00040 * 20 18 16 23 23 H 1.48499 * 109.46961 * 335.00147 * 20 18 16 24 24 C 1.47071 * 87.87929 * 27.08822 * 15 14 13 25 25 H 1.09005 * 109.47034 * 186.32166 * 1 2 3 26 26 H 1.08992 * 109.47344 * 306.32263 * 1 2 3 27 27 H 1.09002 * 109.46755 * 66.32712 * 1 2 3 28 28 H 1.09005 * 110.48425 * 261.57386 * 4 2 1 29 29 H 1.09003 * 110.48447 * 24.21570 * 4 2 1 30 30 H 1.08997 * 110.75072 * 80.36932 * 5 4 2 31 31 H 1.08996 * 110.75506 * 203.74759 * 5 4 2 32 32 H 1.09001 * 110.48254 * 279.26425 * 6 5 4 33 33 H 1.08996 * 110.48716 * 156.61518 * 6 5 4 34 34 H 1.08995 * 109.47421 * 299.31415 * 8 7 2 35 35 H 1.08999 * 109.47296 * 59.31547 * 8 7 2 36 36 H 1.09003 * 109.46831 * 179.31068 * 8 7 2 37 37 H 1.08995 * 109.46974 * 266.98933 * 12 11 9 38 38 H 1.09003 * 109.46836 * 26.98997 * 12 11 9 39 39 H 1.08997 * 109.47271 * 146.98402 * 12 11 9 40 40 H 1.08998 * 113.41402 * 13.20532 * 13 11 9 41 41 H 1.08997 * 113.47034 * 105.56708 * 14 13 11 42 42 H 1.08999 * 113.46892 * 335.18185 * 14 13 11 43 43 H 0.97001 * 120.00153 * 179.97438 * 19 18 16 44 44 H 1.09002 * 113.46837 * 87.66585 * 24 15 14 45 45 H 1.09005 * 113.46675 * 218.03681 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7560 1.2365 5 6 3.3137 -1.5011 0.7185 6 6 2.8875 -1.9405 -0.7043 7 6 2.0572 -0.7531 -1.2341 8 6 2.9399 0.1715 -2.0747 9 6 0.9038 -1.2579 -2.0623 10 8 -0.2237 -1.2226 -1.6171 11 7 1.1254 -1.7484 -3.2980 12 6 2.4971 -1.9170 -3.7840 13 6 -0.0054 -2.1130 -4.1549 14 6 -0.0251 -3.5886 -4.5771 15 7 -0.4501 -3.1483 -5.9145 16 6 -1.1678 -3.6877 -6.9483 17 1 -1.5047 -4.7125 -6.8950 18 6 -1.4624 -2.9176 -8.0650 19 7 -0.9635 -1.7049 -8.1783 20 14 -2.5666 -3.6023 -9.4071 21 1 -3.9644 -3.1595 -9.1719 22 1 -2.1058 -3.1059 -10.7286 23 1 -2.5075 -5.0860 -9.3876 24 6 0.2358 -1.8739 -5.6530 25 1 -0.3633 -1.0215 0.1132 26 1 -0.3633 0.6087 0.8279 27 1 -0.3633 0.4126 -0.9412 28 1 2.3297 -0.0545 2.0255 29 1 1.3142 -1.4667 1.5959 30 1 4.1709 -0.8294 0.6749 31 1 3.5324 -2.3685 1.3413 32 1 2.2772 -2.8424 -0.6583 33 1 3.7637 -2.1032 -1.3318 34 1 2.3533 1.0258 -2.4124 35 1 3.7775 0.5217 -1.4713 36 1 3.3180 -0.3742 -2.9392 37 1 2.8002 -1.0254 -4.3327 38 1 3.1666 -2.0678 -2.9372 39 1 2.5449 -2.7834 -4.4437 40 1 -0.9626 -1.7394 -3.7912 41 1 -0.7778 -4.1795 -4.0552 42 1 0.9594 -4.0563 -4.5666 43 1 -1.1691 -1.1668 -8.9587 44 1 1.2903 -1.8839 -5.9290 45 1 -0.2944 -1.0068 -6.0468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043772642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:50 Heat of formation + Delta-G solvation = 46.705803 kcal Electronic energy + Delta-G solvation = -23538.162672 eV Core-core repulsion = 20365.665351 eV Total energy + Delta-G solvation = -3172.497321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18404 -40.13117 -38.10605 -36.43016 -34.20714 -32.11793 -31.84685 -29.52493 -28.25988 -27.19123 -26.43812 -25.74365 -24.56300 -22.52052 -21.57951 -20.47634 -19.92894 -18.83969 -17.87328 -17.08562 -16.74639 -16.48670 -16.29926 -15.69972 -15.50366 -15.16047 -14.82889 -14.51344 -14.41219 -13.92265 -13.85283 -13.39558 -13.31625 -13.20759 -13.09914 -12.89320 -12.77184 -12.66688 -12.59414 -12.18432 -11.97025 -11.89691 -11.72961 -11.56046 -11.46573 -11.39807 -11.28086 -11.13235 -10.89035 -9.66967 -9.37156 -8.99846 -7.96809 -5.31153 1.44064 1.47180 1.55669 1.66073 2.02327 2.46725 3.26327 3.37668 3.46910 3.63743 3.68325 3.81435 4.02552 4.24933 4.27006 4.38027 4.39409 4.43223 4.47587 4.58364 4.62374 4.69421 4.72818 4.78661 4.81304 4.87136 4.94407 5.02034 5.04508 5.08469 5.15349 5.17003 5.23298 5.29510 5.30384 5.37387 5.42174 5.47153 5.52620 5.69996 5.77769 5.86138 6.56974 6.84317 7.30389 7.52798 8.52051 9.20945 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037819 B = 0.003945 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.184825 B = 7096.509100 C = 7238.025161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.080 4.080 3 H 0.085 0.915 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.073 4.073 8 C -0.161 4.161 9 C 0.505 3.495 10 O -0.564 6.564 11 N -0.596 5.596 12 C 0.063 3.937 13 C 0.115 3.885 14 C 0.113 3.887 15 N -0.636 5.636 16 C -0.235 4.235 17 H 0.087 0.913 18 C -0.062 4.062 19 N -0.951 5.951 20 Si 0.984 3.016 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.265 1.265 24 C 0.153 3.847 25 H 0.055 0.945 26 H 0.022 0.978 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.057 0.943 43 H 0.251 0.749 44 H 0.039 0.961 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.887 2.557 17.466 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.077 4.077 8 C -0.217 4.217 9 C 0.296 3.704 10 O -0.444 6.444 11 N -0.328 5.328 12 C -0.079 4.079 13 C 0.009 3.991 14 C -0.013 4.013 15 N -0.362 5.362 16 C -0.363 4.363 17 H 0.104 0.896 18 C -0.256 4.256 19 N -0.599 5.599 20 Si 0.811 3.189 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.190 1.190 24 C 0.026 3.974 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.146 2.540 17.360 21.924 hybrid contribution -1.150 -0.179 -1.308 1.751 sum 11.996 2.361 16.052 20.178 Atomic orbital electron populations 1.22140 0.95397 1.01087 0.98190 1.21808 0.95392 0.99446 0.93224 0.89621 1.22467 0.97503 0.99026 0.96564 1.22474 0.97601 1.00571 0.94412 1.22524 0.99055 0.95149 0.98112 1.21445 0.93136 0.97884 0.95193 1.22446 0.99465 0.98732 1.01071 1.21655 0.91155 0.76524 0.81084 1.90880 1.27589 1.56349 1.69566 1.48013 1.07229 1.62913 1.14656 1.22453 0.81533 1.02205 1.01678 1.22888 0.90198 0.96063 0.89969 1.22883 0.98004 0.95274 0.85144 1.45568 1.59887 1.16115 1.14636 1.19318 1.25413 0.96473 0.95048 0.89560 1.25695 1.02145 0.96875 1.00848 1.70017 1.48486 1.11043 1.30338 0.84989 0.78057 0.78085 0.77754 1.21461 1.21702 1.18962 1.22405 0.95208 0.90337 0.89406 0.92584 0.95976 0.94548 0.90034 0.92714 0.89250 0.90288 0.92787 0.88251 0.93685 0.88992 0.89151 0.91220 0.87124 0.91685 0.89260 0.94089 0.92540 0.94049 0.94353 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.21 7.33 71.98 0.53 -2.69 16 2 C -0.08 -1.71 3.16 -10.07 -0.03 -1.74 16 3 H 0.09 1.60 7.67 -2.39 -0.02 1.58 16 4 C -0.12 -1.96 6.36 31.67 0.20 -1.75 16 5 C -0.11 -1.43 6.91 31.89 0.22 -1.21 16 6 C -0.11 -1.81 4.90 31.67 0.16 -1.65 16 7 C -0.07 -1.57 0.61 -52.20 -0.03 -1.60 16 8 C -0.16 -2.73 7.72 71.98 0.56 -2.18 16 9 C 0.50 15.78 6.08 87.66 0.53 16.32 16 10 O -0.56 -21.83 10.21 -3.03 -0.03 -21.86 16 11 N -0.60 -18.98 3.10 -821.55 -2.55 -21.52 16 12 C 0.06 1.47 7.17 127.77 0.92 2.38 16 13 C 0.11 4.73 4.54 45.48 0.21 4.94 16 14 C 0.11 4.85 8.25 83.17 0.69 5.54 16 15 N -0.64 -33.80 3.78 -737.87 -2.79 -36.59 16 16 C -0.23 -13.51 10.74 84.04 0.90 -12.61 16 17 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 18 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 19 N -0.95 -58.01 11.49 21.65 0.25 -57.76 16 20 Si 0.98 46.16 29.56 68.60 2.03 48.18 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C 0.15 7.41 6.89 83.21 0.57 7.98 16 25 H 0.06 1.86 6.18 -14.93 -0.09 1.77 16 26 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.04 1.25 6.29 -6.34 -0.04 1.21 16 28 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.05 1.06 7.76 -2.39 -0.02 1.04 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 1.08 7.85 -2.39 -0.02 1.07 16 33 H 0.10 1.15 6.30 -2.39 -0.02 1.13 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.41 3.63 -2.39 -0.01 1.40 16 37 H 0.07 1.53 6.94 -2.39 -0.02 1.51 16 38 H 0.11 1.81 3.67 -2.39 -0.01 1.80 16 39 H 0.06 1.65 6.31 -2.39 -0.02 1.64 16 40 H 0.09 4.18 7.36 -2.39 -0.02 4.17 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 2.18 6.93 -2.39 -0.02 2.17 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.04 1.77 6.63 -2.39 -0.02 1.76 16 45 H 0.04 2.03 7.04 -2.38 -0.02 2.01 16 Total: -1.00 -71.24 329.31 3.66 -67.58 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.87 Total: 13.37 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 5.88 Total: 8.61 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -5.09 Total: -115.87 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.03 Total: -21.86 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -71.24 3.66 -67.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043772642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.285 kcal (2) G-P(sol) polarization free energy of solvation -71.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds