Wall clock time and date at job start Tue Mar 31 2020 02:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.78165 * 2 1 4 4 C 1.55159 * 110.72204 * 236.76318 * 2 1 3 5 5 C 1.55130 * 101.48885 * 205.97317 * 4 2 1 6 6 N 1.47425 * 104.72141 * 37.29401 * 5 4 2 7 7 C 1.34771 * 125.64926 * 155.82038 * 6 5 4 8 8 O 1.21588 * 120.00227 * 189.09218 * 7 6 5 9 9 N 1.34780 * 119.99777 * 9.09274 * 7 6 5 10 10 C 1.46935 * 120.62870 * 188.12730 * 9 7 6 11 11 C 1.53193 * 108.88885 * 233.68283 * 10 9 7 12 12 C 1.53041 * 109.31273 * 305.29112 * 11 10 9 13 13 C 1.53002 * 109.45737 * 181.37605 * 12 11 10 14 14 C 1.50700 * 109.47003 * 175.00438 * 13 12 11 15 15 H 1.08001 * 119.99931 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00069 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99740 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99930 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47295 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47018 * 119.99794 * 18 16 14 21 21 H 1.48493 * 109.46835 * 239.99501 * 18 16 14 22 22 C 1.53036 * 109.53653 * 61.37263 * 12 11 10 23 23 C 1.47199 * 120.81635 * 8.27630 * 9 7 6 24 24 C 1.47024 * 108.70178 * 335.55261 * 6 5 4 25 25 H 1.08999 * 109.46666 * 296.76006 * 1 2 3 26 26 H 1.09006 * 109.46694 * 56.75640 * 1 2 3 27 27 H 1.08995 * 109.47119 * 176.75725 * 1 2 3 28 28 H 1.09008 * 111.00115 * 324.21359 * 4 2 1 29 29 H 1.08994 * 111.00540 * 88.02301 * 4 2 1 30 30 H 1.08995 * 110.49187 * 278.45268 * 5 4 2 31 31 H 1.08999 * 110.34537 * 156.05398 * 5 4 2 32 32 H 1.08991 * 109.58377 * 113.82245 * 10 9 7 33 33 H 1.09001 * 109.58619 * 353.53835 * 10 9 7 34 34 H 1.08998 * 109.49791 * 65.25033 * 11 10 9 35 35 H 1.09006 * 109.48979 * 185.34299 * 11 10 9 36 36 H 1.09002 * 109.46252 * 301.34851 * 12 11 10 37 37 H 1.09001 * 109.46892 * 295.00039 * 13 12 11 38 38 H 1.09001 * 109.47419 * 55.00046 * 13 12 11 39 39 H 0.97000 * 119.99361 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.50132 * 58.57894 * 22 12 11 41 41 H 1.08995 * 109.49796 * 178.68031 * 22 12 11 42 42 H 1.08999 * 109.53123 * 6.52654 * 23 9 7 43 43 H 1.09003 * 109.67679 * 246.22687 * 23 9 7 44 44 H 1.09005 * 109.88024 * 120.70442 * 24 6 5 45 45 H 1.08998 * 109.88564 * 241.71235 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0790 -0.7954 -1.2138 5 6 3.4666 -1.2456 -0.6862 6 7 3.2445 -1.5509 0.7389 7 6 3.9922 -2.3837 1.4897 8 8 3.6243 -2.6905 2.6072 9 7 5.1479 -2.8766 1.0016 10 6 5.8838 -3.9193 1.7298 11 6 7.3277 -3.4524 1.9397 12 6 7.9414 -3.0818 0.5876 13 6 9.3946 -2.6477 0.7894 14 6 10.0359 -2.4006 -0.5518 15 1 9.4643 -2.5397 -1.4575 16 6 11.3527 -1.9980 -0.6227 17 7 12.0489 -1.8291 0.4803 18 14 12.1477 -1.6924 -2.2852 19 1 11.1587 -1.9518 -3.3620 20 1 12.6062 -0.2820 -2.3628 21 1 13.3105 -2.6007 -2.4522 22 6 7.1480 -1.9317 -0.0365 23 6 5.7021 -2.3811 -0.2689 24 6 2.0760 -0.7912 1.2072 25 1 -0.3632 0.4627 0.9176 26 1 -0.3633 0.5634 -0.8596 27 1 -0.3633 -1.0260 -0.0581 28 1 1.4451 -1.6535 -1.4376 29 1 2.1844 -0.1520 -2.0872 30 1 4.1947 -0.4416 -0.7929 31 1 3.8031 -2.1363 -1.2168 32 1 5.8787 -4.8423 1.1503 33 1 5.4114 -4.0922 2.6968 34 1 7.3368 -2.5812 2.5946 35 1 7.9072 -4.2560 2.3944 36 1 7.9095 -3.9467 -0.0750 37 1 9.4215 -1.7315 1.3793 38 1 9.9392 -3.4333 1.3133 39 1 12.9751 -1.5454 0.4304 40 1 7.1588 -1.0747 0.6369 41 1 7.5997 -1.6526 -0.9885 42 1 5.1090 -1.5369 -0.6206 43 1 5.6819 -3.1771 -1.0133 44 1 1.3129 -1.4759 1.5774 45 1 2.3735 -0.1045 1.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335416213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:20 Heat of formation + Delta-G solvation = -36.022671 kcal Electronic energy + Delta-G solvation = -22870.146533 eV Core-core repulsion = 19694.061836 eV Total energy + Delta-G solvation = -3176.084697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82892 -39.37739 -38.42332 -35.78199 -34.44869 -33.49054 -31.97256 -30.66676 -29.78985 -27.48433 -26.25862 -24.78043 -23.83298 -22.65410 -21.63657 -21.03788 -20.35774 -18.43735 -18.16817 -17.57070 -17.16346 -16.54384 -16.04107 -15.61696 -15.25757 -15.06435 -14.81011 -14.58683 -14.53002 -14.30148 -13.99732 -13.74113 -13.61254 -13.36662 -13.14510 -13.00310 -12.70871 -12.63967 -12.52035 -12.30244 -12.17210 -11.82185 -11.71568 -11.60734 -11.49649 -11.39638 -11.25536 -10.83927 -10.68220 -10.49237 -9.96451 -9.28691 -8.15630 -6.25620 1.42248 1.42873 1.52807 1.55537 2.03042 2.43704 2.75652 3.18179 3.56342 3.57525 3.91149 3.93843 4.03663 4.08064 4.18725 4.28120 4.36154 4.41231 4.49707 4.57581 4.64147 4.65110 4.73763 4.82216 4.86931 4.89733 4.93959 4.96766 5.05446 5.09915 5.17112 5.21884 5.29525 5.31863 5.36603 5.42123 5.49091 5.55238 5.63198 5.81137 5.89469 5.99641 6.29355 6.86987 6.91486 7.43361 7.44812 8.96781 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.003879 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.822798 B = 7217.066784 C = 8043.971608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.096 0.904 4 C -0.121 4.121 5 C 0.082 3.918 6 N -0.640 5.640 7 C 0.716 3.284 8 O -0.639 6.639 9 N -0.622 5.622 10 C 0.137 3.863 11 C -0.121 4.121 12 C -0.072 4.072 13 C 0.032 3.968 14 C -0.524 4.524 15 H 0.070 0.930 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.963 3.037 19 H -0.254 1.254 20 H -0.282 1.282 21 H -0.284 1.284 22 C -0.111 4.111 23 C 0.072 3.928 24 C 0.124 3.876 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.064 0.936 37 H -0.019 1.019 38 H -0.015 1.015 39 H 0.260 0.740 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.793 2.888 -6.994 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.114 0.886 4 C -0.159 4.159 5 C -0.039 4.039 6 N -0.378 5.378 7 C 0.420 3.580 8 O -0.522 6.522 9 N -0.358 5.358 10 C 0.014 3.986 11 C -0.160 4.160 12 C -0.091 4.091 13 C -0.005 4.005 14 C -0.562 4.562 15 H 0.088 0.912 16 C -0.203 4.203 17 N -0.580 5.580 18 Si 0.788 3.212 19 H -0.178 1.178 20 H -0.208 1.208 21 H -0.210 1.210 22 C -0.149 4.149 23 C -0.049 4.049 24 C 0.001 3.999 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.083 0.917 37 H -0.001 1.001 38 H 0.003 0.997 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.154 0.846 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.792 2.703 -6.296 23.800 hybrid contribution 1.378 0.107 0.124 1.387 sum -21.415 2.810 -6.172 22.463 Atomic orbital electron populations 1.21727 0.92557 1.02345 1.02893 1.22241 0.97202 0.99304 0.92764 0.88616 1.23006 0.93957 1.00839 0.98060 1.23022 0.99149 1.01578 0.80174 1.47585 1.31219 1.46866 1.12086 1.15651 0.80445 0.78813 0.83140 1.90837 1.74332 1.65818 1.21184 1.47348 1.21330 1.41935 1.25144 1.21435 0.90558 0.89401 0.97229 1.21914 0.95411 1.00758 0.97884 1.21036 0.94777 0.97953 0.95328 1.19027 0.91913 0.93896 0.95644 1.21694 0.96519 1.44270 0.93745 0.91230 1.26018 0.98393 0.95588 1.00292 1.70136 1.09635 1.48802 1.29470 0.85423 0.78478 0.77484 0.79821 1.17773 1.20846 1.20988 1.21777 0.94554 0.97252 1.01346 1.23234 0.94874 1.02110 0.84661 1.22007 0.86300 0.93738 0.97874 0.92286 0.90435 0.92671 0.90105 0.87063 0.89597 0.88947 0.90047 0.90550 0.94133 0.90908 0.91710 1.00062 0.99678 0.93089 0.94431 0.90314 0.84649 0.89988 0.92534 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.14 71.98 0.66 -0.63 16 2 C -0.10 -1.16 3.54 -9.60 -0.03 -1.20 16 3 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.12 -1.25 6.54 32.06 0.21 -1.04 16 5 C 0.08 1.31 4.82 86.93 0.42 1.73 16 6 N -0.64 -15.84 3.32 -907.74 -3.02 -18.85 16 7 C 0.72 23.75 8.31 179.06 1.49 25.23 16 8 O -0.64 -26.26 16.12 -3.99 -0.06 -26.33 16 9 N -0.62 -19.15 2.98 -836.19 -2.50 -21.65 16 10 C 0.14 4.33 6.43 86.36 0.56 4.88 16 11 C -0.12 -4.39 5.36 30.67 0.16 -4.22 16 12 C -0.07 -2.88 2.10 -10.77 -0.02 -2.90 16 13 C 0.03 1.69 4.45 29.85 0.13 1.82 16 14 C -0.52 -28.66 8.39 25.60 0.21 -28.44 16 15 H 0.07 3.54 7.06 -2.91 -0.02 3.52 16 16 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 17 N -0.94 -57.50 13.29 21.45 0.28 -57.22 16 18 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 19 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 C -0.11 -3.84 5.19 30.67 0.16 -3.68 16 23 C 0.07 1.87 4.88 86.31 0.42 2.29 16 24 C 0.12 2.58 6.48 86.73 0.56 3.14 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.05 0.56 8.10 -2.39 -0.02 0.54 16 28 H 0.08 0.83 8.02 -2.38 -0.02 0.81 16 29 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 1.27 6.93 -2.39 -0.02 1.26 16 31 H 0.09 1.39 6.21 -2.39 -0.01 1.38 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.08 2.57 7.00 -2.39 -0.02 2.56 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 38 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 2.79 6.91 -2.39 -0.02 2.77 16 42 H 0.14 2.83 2.65 -31.13 -0.08 2.75 16 43 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 44 H 0.06 1.27 7.82 -2.38 -0.02 1.26 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -73.32 342.48 3.00 -70.32 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.87 Total: 11.29 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 5.39 Total: -2.89 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -5.23 Total: -97.72 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.33 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -73.32 3.00 -70.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335416213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.296 kcal (2) G-P(sol) polarization free energy of solvation -73.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds