Wall clock time and date at job start Tue Mar 31 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49083 * 2 1 4 4 C 1.53034 * 109.50054 * 120.09503 * 2 1 3 5 5 C 1.53042 * 109.53423 * 58.59017 * 4 2 1 6 6 H 1.09002 * 109.50116 * 301.41052 * 5 4 2 7 7 C 1.53009 * 109.52296 * 181.33149 * 5 4 2 8 8 C 1.53197 * 109.31353 * 61.36579 * 5 4 2 9 9 N 1.46920 * 108.77224 * 305.36365 * 8 5 4 10 10 C 1.34780 * 120.62804 * 233.62956 * 9 8 5 11 11 O 1.21583 * 119.99906 * 173.93854 * 10 9 8 12 12 N 1.34775 * 120.00125 * 353.94053 * 10 9 8 13 13 C 1.46498 * 119.99932 * 186.28660 * 12 10 9 14 14 C 1.53001 * 109.46920 * 183.86340 * 13 12 10 15 15 C 1.50705 * 115.55136 * 305.93182 * 14 13 12 16 16 H 1.08000 * 120.00302 * 144.08886 * 15 14 13 17 17 C 1.37876 * 119.99458 * 324.09518 * 15 14 13 18 18 N 1.31507 * 120.00603 * 351.09422 * 17 15 14 19 19 Si 1.86808 * 119.99694 * 171.10290 * 17 15 14 20 20 H 1.48495 * 109.47356 * 89.99252 * 19 17 15 21 21 H 1.48498 * 109.47045 * 209.99884 * 19 17 15 22 22 H 1.48507 * 109.46679 * 329.99517 * 19 17 15 23 23 C 1.53004 * 117.50026 * 160.26608 * 14 13 12 24 24 C 1.52994 * 117.50155 * 91.60396 * 14 13 12 25 25 C 1.46922 * 118.74162 * 53.60746 * 9 8 5 26 26 H 1.09004 * 109.46541 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47450 * 60.06502 * 1 2 3 28 28 H 1.08991 * 109.47170 * 300.06302 * 1 2 3 29 29 H 1.08995 * 109.46073 * 178.61169 * 4 2 1 30 30 H 1.08999 * 109.46435 * 298.57394 * 4 2 1 31 31 H 1.08998 * 109.47103 * 300.14706 * 7 5 4 32 32 H 1.08997 * 109.46877 * 60.14668 * 7 5 4 33 33 H 1.09002 * 109.46992 * 180.14295 * 7 5 4 34 34 H 1.09004 * 109.58121 * 185.57462 * 8 5 4 35 35 H 1.08993 * 109.70114 * 65.22163 * 8 5 4 36 36 H 0.96998 * 119.99748 * 6.27688 * 12 10 9 37 37 H 1.09003 * 109.47155 * 303.85692 * 13 12 10 38 38 H 1.08997 * 109.47267 * 63.86427 * 13 12 10 39 39 H 0.97000 * 120.00308 * 185.03225 * 18 17 15 40 40 H 1.09002 * 117.49727 * 359.97438 * 23 14 13 41 41 H 1.08997 * 117.50082 * 145.01718 * 23 14 13 42 42 H 1.09002 * 117.50184 * 214.97880 * 24 14 13 43 43 H 1.08999 * 117.50291 * 359.97438 * 24 14 13 44 44 H 1.09004 * 109.58849 * 186.60038 * 25 9 8 45 45 H 1.09007 * 109.70344 * 66.25057 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7233 1.2481 5 6 1.5032 -2.1561 1.2653 6 1 0.4134 -2.1359 1.2534 7 6 1.9869 -2.8687 2.5299 8 6 2.0142 -2.9039 0.0298 9 7 1.6517 -2.1377 -1.1702 10 6 0.9742 -2.7212 -2.1788 11 8 0.5838 -2.0522 -3.1159 12 7 0.7293 -4.0461 -2.1483 13 6 0.1160 -4.7044 -3.3045 14 6 -0.1398 -6.1768 -2.9767 15 6 1.0579 -6.9524 -2.4918 16 1 0.9377 -7.7157 -1.7373 17 6 2.3072 -6.6873 -3.0113 18 7 2.4323 -5.8877 -4.0479 19 14 3.8224 -7.4641 -2.2429 20 1 4.0983 -8.7667 -2.9003 21 1 4.9874 -6.5614 -2.4242 22 1 3.5857 -7.6817 -0.7930 23 6 -1.1656 -6.9232 -3.8321 24 6 -1.5039 -6.5430 -2.3885 25 6 2.0413 -0.7234 -1.2498 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5128 -0.8905 28 1 -0.3633 0.5148 0.8893 29 1 3.1306 -0.7446 1.2350 30 1 1.6988 -0.1964 2.1388 31 1 3.0767 -2.8876 2.5420 32 1 1.6231 -2.3362 3.4087 33 1 1.6056 -3.8898 2.5400 34 1 1.5556 -3.8918 -0.0149 35 1 3.0980 -3.0063 0.0844 36 1 0.9592 -4.5639 -1.3610 37 1 -0.8289 -4.2156 -3.5420 38 1 0.7868 -4.6340 -4.1608 39 1 3.3014 -5.7586 -4.4588 40 1 -1.6584 -6.3651 -4.6282 41 1 -0.9743 -7.9751 -4.0438 42 1 -1.5351 -7.3450 -1.6510 43 1 -2.2190 -5.7349 -2.2346 44 1 1.6007 -0.2724 -2.1390 45 1 3.1273 -0.6435 -1.2996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335683671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:56 Heat of formation + Delta-G solvation = -14.230369 kcal Electronic energy + Delta-G solvation = -23650.923162 eV Core-core repulsion = 20475.783450 eV Total energy + Delta-G solvation = -3175.139712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.04660 -37.83502 -36.55254 -33.65187 -33.14593 -32.46163 -32.08758 -27.07954 -26.64674 -26.12786 -25.45247 -24.20838 -21.48117 -21.19720 -19.77891 -19.26531 -18.41263 -17.60718 -16.17793 -15.65486 -15.09878 -14.86353 -14.74049 -14.16475 -14.01906 -13.89294 -13.70192 -13.21746 -13.02706 -12.75957 -12.49464 -12.04811 -12.03189 -11.67792 -11.57774 -11.49313 -11.36488 -11.06821 -10.95607 -10.78805 -10.70336 -10.50503 -10.38052 -10.25332 -10.18422 -9.61251 -9.20279 -9.08188 -8.80679 -8.30486 -8.15902 -7.61983 -6.04383 -4.16959 3.19829 3.29312 3.30038 3.33940 4.02415 4.28743 4.58809 4.77470 4.81837 4.87879 5.02202 5.09963 5.24950 5.43026 5.50277 5.52985 5.60019 5.68785 5.70377 5.80142 5.89684 5.92418 6.01228 6.06053 6.06681 6.10089 6.17862 6.27994 6.31374 6.35031 6.50784 6.59304 6.65350 6.77662 6.90006 6.98489 7.13577 7.30144 7.56759 7.67499 7.78835 7.96797 8.34424 8.77335 8.95401 9.44208 9.49388 10.90906 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.006208 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.830286 B = 4509.253042 C = 5095.294526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.076 0.924 4 C -0.106 4.106 5 C -0.109 4.109 6 H 0.078 0.922 7 C -0.146 4.146 8 C 0.118 3.882 9 N -0.633 5.633 10 C 0.704 3.296 11 O -0.608 6.608 12 N -0.708 5.708 13 C 0.179 3.821 14 C 0.038 3.962 15 C -0.500 4.500 16 H 0.061 0.939 17 C 0.077 3.923 18 N -0.864 5.864 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.195 4.195 24 C -0.212 4.212 25 C 0.135 3.865 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.023 0.977 38 H 0.105 0.895 39 H 0.263 0.737 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 8.616 11.155 14.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 H 0.094 0.906 4 C -0.144 4.144 5 C -0.129 4.129 6 H 0.096 0.904 7 C -0.204 4.204 8 C -0.006 4.006 9 N -0.372 5.372 10 C 0.406 3.594 11 O -0.488 6.488 12 N -0.361 5.361 13 C 0.056 3.944 14 C 0.038 3.962 15 C -0.537 4.537 16 H 0.079 0.921 17 C -0.128 4.128 18 N -0.500 5.500 19 Si 0.715 3.285 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.234 4.234 24 C -0.249 4.249 25 C 0.012 3.988 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.231 0.769 37 H 0.041 0.959 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.099 9.191 10.319 13.819 hybrid contribution 0.954 -0.846 0.738 1.473 sum 1.053 8.345 11.057 13.893 Atomic orbital electron populations 1.21789 0.94855 1.02336 1.00940 1.21515 0.96713 0.99015 0.95419 0.90607 1.21575 1.00302 0.95112 0.97364 1.21570 1.01306 0.95288 0.94720 0.90391 1.21779 1.01295 1.00584 0.96692 1.21611 0.99929 0.95010 0.84059 1.47119 1.60588 1.11049 1.18418 1.15880 0.78821 0.82731 0.82011 1.90810 1.58404 1.63531 1.36089 1.45116 1.65092 1.05430 1.20458 1.20868 0.95372 0.89271 0.88917 1.19203 0.87746 0.92056 0.97243 1.20466 0.90103 1.19869 1.23291 0.92125 1.24965 0.98747 0.94389 0.94697 1.69846 1.24355 1.35595 1.20192 0.86658 0.82721 0.79174 0.79953 1.20591 1.21097 1.19677 1.22910 1.07604 1.00768 0.92101 1.22948 1.02690 1.02713 0.96589 1.21353 0.98468 0.80588 0.98430 0.92145 0.92757 0.93345 0.91973 0.92087 0.92604 0.92639 0.92230 0.90007 0.91957 0.76874 0.95878 0.87685 0.92680 0.91507 0.90234 0.90711 0.91396 0.89063 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.70 37.16 0.32 -1.44 16 2 C -0.11 -1.24 3.21 -90.50 -0.29 -1.53 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -1.10 4.71 -26.69 -0.13 -1.23 16 5 C -0.11 -1.26 2.53 -90.49 -0.23 -1.49 16 6 H 0.08 0.97 6.33 -51.93 -0.33 0.64 16 7 C -0.15 -1.42 9.20 37.16 0.34 -1.08 16 8 C 0.12 1.71 5.67 -3.71 -0.02 1.68 16 9 N -0.63 -10.88 2.41 -178.50 -0.43 -11.31 16 10 C 0.70 15.29 8.29 -86.92 -0.72 14.57 16 11 O -0.61 -15.20 15.75 5.29 0.08 -15.12 16 12 N -0.71 -15.66 5.23 -65.23 -0.34 -16.01 16 13 C 0.18 4.36 4.77 -4.04 -0.02 4.34 16 14 C 0.04 0.91 1.99 -155.66 -0.31 0.61 16 15 C -0.50 -12.70 8.28 -34.44 -0.29 -12.98 16 16 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 17 C 0.08 1.97 5.19 -17.82 -0.09 1.88 16 18 N -0.86 -23.28 10.72 55.43 0.59 -22.69 16 19 Si 0.89 19.91 29.55 -169.99 -5.02 14.88 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.20 -4.35 9.96 -26.69 -0.27 -4.62 16 24 C -0.21 -4.49 9.92 -26.70 -0.26 -4.75 16 25 C 0.14 2.00 5.84 -3.71 -0.02 1.97 16 26 H 0.06 0.87 5.97 -51.93 -0.31 0.56 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.26 5.66 -51.93 -0.29 0.97 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.39 8.33 5.44 -40.82 -0.22 8.11 16 37 H 0.02 0.56 8.06 -51.93 -0.42 0.14 16 38 H 0.11 2.90 6.00 -51.93 -0.31 2.59 16 39 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 42 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.09 1.52 7.00 -51.93 -0.36 1.16 16 45 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -28.64 347.83 -9.57 -38.21 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.71 Total: 10.86 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.98 Total: -4.07 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.18 Total: -50.00 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.12 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.64 -9.57 -38.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335683671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.982 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds