Wall clock time and date at job start Tue Mar 31 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.49461 * 2 1 4 4 C 1.53171 * 109.51561 * 239.92729 * 2 1 3 5 5 C 1.53148 * 109.35501 * 180.83070 * 4 2 1 6 6 N 1.46883 * 109.08575 * 56.38993 * 5 4 2 7 7 C 1.34782 * 120.67427 * 124.74540 * 6 5 4 8 8 O 1.21581 * 120.00070 * 354.76610 * 7 6 5 9 9 N 1.34784 * 119.99881 * 174.76675 * 7 6 5 10 10 C 1.46496 * 119.99949 * 184.97700 * 9 7 6 11 11 C 1.52996 * 109.47188 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47464 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00436 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00110 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99777 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46866 * 90.00156 * 16 14 12 18 18 H 1.48495 * 109.47117 * 210.00278 * 16 14 12 19 19 H 1.48501 * 109.46986 * 330.00539 * 16 14 12 20 20 C 1.47096 * 118.64747 * 304.72954 * 6 5 4 21 21 C 1.52714 * 109.49781 * 120.06054 * 2 1 3 22 22 C 1.53378 * 113.57750 * 46.58145 * 21 2 1 23 23 C 1.53840 * 86.96080 * 220.03611 * 22 21 2 24 24 C 1.53349 * 113.64104 * 308.58662 * 21 2 1 25 25 H 1.09003 * 109.46441 * 299.93997 * 1 2 3 26 26 H 1.08998 * 109.47154 * 59.93986 * 1 2 3 27 27 H 1.08999 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.49495 * 300.79857 * 4 2 1 29 29 H 1.09006 * 109.49177 * 60.87233 * 4 2 1 30 30 H 1.09000 * 109.53698 * 176.27486 * 5 4 2 31 31 H 1.09003 * 109.53490 * 296.43247 * 5 4 2 32 32 H 0.97002 * 119.99725 * 4.96965 * 9 7 6 33 33 H 1.09002 * 109.46796 * 299.99579 * 10 9 7 34 34 H 1.09000 * 109.46983 * 59.99714 * 10 9 7 35 35 H 1.08999 * 109.47243 * 300.00163 * 11 10 9 36 36 H 1.09009 * 109.47193 * 59.99487 * 11 10 9 37 37 H 0.97002 * 119.99697 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.63473 * 291.80561 * 20 6 5 39 39 H 1.09004 * 109.64282 * 171.18905 * 20 6 5 40 40 H 1.09003 * 113.63189 * 334.55395 * 22 21 2 41 41 H 1.09003 * 113.63536 * 105.51696 * 22 21 2 42 42 H 1.09005 * 113.60559 * 270.55251 * 23 22 21 43 43 H 1.09003 * 113.60448 * 139.68848 * 23 22 21 44 44 H 1.08997 * 113.63520 * 254.43022 * 24 21 2 45 45 H 1.09008 * 113.62844 * 25.29598 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7234 -1.2494 5 6 3.5731 -0.7394 -1.2352 6 7 4.0353 -1.3658 0.0104 7 6 4.8739 -2.4205 -0.0203 8 8 5.1802 -2.9229 -1.0843 9 7 5.3729 -2.9184 1.1285 10 6 6.3677 -3.9931 1.0900 11 6 6.7656 -4.3711 2.5181 12 6 7.7885 -5.4770 2.4786 13 1 8.1219 -5.8706 1.5296 14 6 8.2989 -5.9865 3.6537 15 7 9.1920 -6.9512 3.6192 16 14 7.7229 -5.3052 5.2950 17 1 6.5431 -6.0754 5.7639 18 1 8.8180 -5.4219 6.2911 19 1 7.3497 -3.8769 5.1345 20 6 3.5647 -0.8182 1.2920 21 6 2.0398 -0.7211 1.2459 22 6 1.3337 -2.0561 1.5141 23 6 1.3593 -1.6764 3.0047 24 6 1.4191 -0.2076 2.5508 25 1 -0.3632 0.5129 0.8906 26 1 -0.3633 0.5148 -0.8894 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6674 -1.7471 -1.2559 29 1 1.6918 -0.2022 -2.1405 30 1 3.9395 -1.3106 -2.0882 31 1 3.9488 0.2822 -1.2921 32 1 5.0733 -2.5651 1.9807 33 1 5.9437 -4.8629 0.5883 34 1 7.2488 -3.6532 0.5456 35 1 7.1897 -3.5012 3.0195 36 1 5.8847 -4.7108 3.0629 37 1 9.5513 -7.3094 4.4460 38 1 3.9905 0.1735 1.4450 39 1 3.8655 -1.4788 2.1052 40 1 0.3293 -2.1112 1.0944 41 1 1.9424 -2.9281 1.2748 42 1 2.2576 -2.0094 3.5246 43 1 0.4425 -1.9321 3.5360 44 1 2.0961 0.4063 3.1448 45 1 0.4389 0.2504 2.4178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336389955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:35 Heat of formation + Delta-G solvation = -16.002323 kcal Electronic energy + Delta-G solvation = -23006.334856 eV Core-core repulsion = 19831.118307 eV Total energy + Delta-G solvation = -3175.216549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15789 -39.19820 -35.95680 -34.83849 -33.89839 -32.68031 -30.34676 -29.27344 -28.00369 -25.99618 -24.93523 -23.88537 -23.04995 -21.26620 -20.72036 -19.72399 -18.27987 -17.73242 -16.87602 -16.01996 -15.90388 -15.59905 -14.88010 -14.53720 -14.28916 -14.07303 -13.99525 -13.82745 -13.52155 -13.10305 -12.90396 -12.62920 -12.53986 -12.34080 -11.84865 -11.75379 -11.47263 -11.43245 -11.30178 -11.17673 -10.92189 -10.61099 -10.36931 -10.21345 -10.16857 -10.04019 -9.94138 -9.66960 -9.30549 -8.74199 -8.60218 -8.24781 -6.09468 -4.09233 2.86718 3.25844 3.33283 3.34636 3.50450 4.08061 4.28436 4.36264 4.38836 4.38898 4.64505 4.71565 4.79305 4.93463 5.12449 5.17523 5.18959 5.23446 5.38283 5.41780 5.47224 5.50923 5.55793 5.61607 5.69855 5.77246 5.82191 5.85169 5.89666 5.96275 6.06355 6.13049 6.22709 6.27704 6.28628 6.57246 6.61500 6.85622 7.07035 7.26465 7.29875 7.69382 8.26552 8.47359 8.92601 8.96157 9.50756 11.03655 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.004246 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.637753 B = 6592.609152 C = 7510.182938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.074 4.074 3 H 0.071 0.929 4 C -0.128 4.128 5 C 0.130 3.870 6 N -0.631 5.631 7 C 0.704 3.296 8 O -0.593 6.593 9 N -0.743 5.743 10 C 0.148 3.852 11 C -0.021 4.021 12 C -0.521 4.521 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.267 1.267 20 C 0.136 3.864 21 C -0.091 4.091 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.132 4.132 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.389 0.611 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.016 0.984 37 H 0.264 0.736 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.485 17.681 -3.343 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 H 0.089 0.911 4 C -0.167 4.167 5 C 0.006 3.994 6 N -0.369 5.369 7 C 0.406 3.594 8 O -0.472 6.472 9 N -0.399 5.399 10 C 0.025 3.975 11 C -0.059 4.059 12 C -0.559 4.559 13 H 0.094 0.906 14 C -0.133 4.133 15 N -0.537 5.537 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 C 0.013 3.987 21 C -0.092 4.092 22 C -0.170 4.170 23 C -0.181 4.181 24 C -0.170 4.170 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.225 0.775 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.071 17.154 -4.023 25.964 hybrid contribution -0.371 0.412 1.448 1.550 sum -19.442 17.566 -2.575 26.328 Atomic orbital electron populations 1.21989 0.95190 1.02053 1.01527 1.20907 0.95455 0.98972 0.93906 0.91101 1.21982 0.95691 1.01443 0.97551 1.21349 0.93458 0.97436 0.87109 1.47225 1.49834 1.33205 1.06666 1.15917 0.78978 0.79706 0.84813 1.90884 1.64852 1.62014 1.29411 1.45691 1.46302 1.41352 1.06513 1.21372 0.88997 0.87282 0.99867 1.19787 0.97004 0.97481 0.91604 1.20919 1.22383 1.17586 0.95056 0.90574 1.24997 0.94580 0.94575 0.99124 1.69906 1.29342 1.26615 1.27854 0.86757 0.78540 0.79988 0.83820 1.20232 1.21275 1.19127 1.21342 0.92092 0.99273 0.86025 1.21921 0.94725 0.97420 0.95100 1.23004 1.00992 0.96927 0.96086 1.22872 1.02268 0.96319 0.96651 1.22992 1.01284 0.96786 0.95890 0.92366 0.92767 0.92208 0.91373 0.90998 0.88877 0.92157 0.77538 0.92138 0.92230 0.96114 0.96557 0.92573 0.91337 0.90171 0.89584 0.91455 0.90089 0.91518 0.91397 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.42 37.16 0.31 -0.70 16 2 C -0.07 -0.58 2.40 -90.68 -0.22 -0.80 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -1.17 5.29 -26.57 -0.14 -1.31 16 5 C 0.13 1.48 6.39 -3.76 -0.02 1.46 16 6 N -0.63 -8.41 2.98 -178.61 -0.53 -8.94 16 7 C 0.70 12.53 8.30 -86.91 -0.72 11.81 16 8 O -0.59 -12.89 15.77 5.29 0.08 -12.81 16 9 N -0.74 -13.07 5.46 -65.23 -0.36 -13.43 16 10 C 0.15 3.13 5.62 -4.05 -0.02 3.11 16 11 C -0.02 -0.49 4.16 -27.89 -0.12 -0.60 16 12 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 13 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 16 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 20 C 0.14 1.42 5.42 -3.78 -0.02 1.40 16 21 C -0.09 -0.79 0.78 -154.34 -0.12 -0.91 16 22 C -0.13 -1.26 6.64 -26.10 -0.17 -1.44 16 23 C -0.14 -1.22 7.73 -25.85 -0.20 -1.42 16 24 C -0.13 -0.98 7.03 -26.11 -0.18 -1.16 16 25 H 0.06 0.35 6.13 -51.93 -0.32 0.03 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 6.04 -51.93 -0.31 0.11 16 28 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.25 6.99 -51.93 -0.36 0.89 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.39 5.86 5.99 -40.82 -0.24 5.62 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 36 H 0.02 0.37 7.57 -51.92 -0.39 -0.03 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.85 4.92 -51.93 -0.26 0.59 16 40 H 0.09 0.75 5.70 -51.93 -0.30 0.46 16 41 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 42 H 0.08 0.73 7.65 -51.93 -0.40 0.33 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 45 H 0.09 0.57 5.92 -51.92 -0.31 0.27 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -32.44 339.32 -9.13 -41.57 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.48 Total: 2.52 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.06 Total: -3.75 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.11 Total: -49.12 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.44 -9.13 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336389955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.564 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds