Wall clock time and date at job start Tue Mar 31 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.49461 * 2 1 4 4 C 1.53171 * 109.51561 * 239.92729 * 2 1 3 5 5 C 1.53148 * 109.35501 * 180.83070 * 4 2 1 6 6 N 1.46883 * 109.08575 * 56.38993 * 5 4 2 7 7 C 1.34782 * 120.67427 * 124.74540 * 6 5 4 8 8 O 1.21581 * 120.00070 * 354.76610 * 7 6 5 9 9 N 1.34784 * 119.99881 * 174.76675 * 7 6 5 10 10 C 1.46496 * 119.99949 * 184.97700 * 9 7 6 11 11 C 1.52996 * 109.47188 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47464 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00436 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00110 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99777 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46866 * 90.00156 * 16 14 12 18 18 H 1.48495 * 109.47117 * 210.00278 * 16 14 12 19 19 H 1.48501 * 109.46986 * 330.00539 * 16 14 12 20 20 C 1.47096 * 118.64747 * 304.72954 * 6 5 4 21 21 C 1.52714 * 109.49781 * 120.06054 * 2 1 3 22 22 C 1.53378 * 113.57750 * 46.58145 * 21 2 1 23 23 C 1.53840 * 86.96080 * 220.03611 * 22 21 2 24 24 C 1.53349 * 113.64104 * 308.58662 * 21 2 1 25 25 H 1.09003 * 109.46441 * 299.93997 * 1 2 3 26 26 H 1.08998 * 109.47154 * 59.93986 * 1 2 3 27 27 H 1.08999 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.49495 * 300.79857 * 4 2 1 29 29 H 1.09006 * 109.49177 * 60.87233 * 4 2 1 30 30 H 1.09000 * 109.53698 * 176.27486 * 5 4 2 31 31 H 1.09003 * 109.53490 * 296.43247 * 5 4 2 32 32 H 0.97002 * 119.99725 * 4.96965 * 9 7 6 33 33 H 1.09002 * 109.46796 * 299.99579 * 10 9 7 34 34 H 1.09000 * 109.46983 * 59.99714 * 10 9 7 35 35 H 1.08999 * 109.47243 * 300.00163 * 11 10 9 36 36 H 1.09009 * 109.47193 * 59.99487 * 11 10 9 37 37 H 0.97002 * 119.99697 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.63473 * 291.80561 * 20 6 5 39 39 H 1.09004 * 109.64282 * 171.18905 * 20 6 5 40 40 H 1.09003 * 113.63189 * 334.55395 * 22 21 2 41 41 H 1.09003 * 113.63536 * 105.51696 * 22 21 2 42 42 H 1.09005 * 113.60559 * 270.55251 * 23 22 21 43 43 H 1.09003 * 113.60448 * 139.68848 * 23 22 21 44 44 H 1.08997 * 113.63520 * 254.43022 * 24 21 2 45 45 H 1.09008 * 113.62844 * 25.29598 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7234 -1.2494 5 6 3.5731 -0.7394 -1.2352 6 7 4.0353 -1.3658 0.0104 7 6 4.8739 -2.4205 -0.0203 8 8 5.1802 -2.9229 -1.0843 9 7 5.3729 -2.9184 1.1285 10 6 6.3677 -3.9931 1.0900 11 6 6.7656 -4.3711 2.5181 12 6 7.7885 -5.4770 2.4786 13 1 8.1219 -5.8706 1.5296 14 6 8.2989 -5.9865 3.6537 15 7 9.1920 -6.9512 3.6192 16 14 7.7229 -5.3052 5.2950 17 1 6.5431 -6.0754 5.7639 18 1 8.8180 -5.4219 6.2911 19 1 7.3497 -3.8769 5.1345 20 6 3.5647 -0.8182 1.2920 21 6 2.0398 -0.7211 1.2459 22 6 1.3337 -2.0561 1.5141 23 6 1.3593 -1.6764 3.0047 24 6 1.4191 -0.2076 2.5508 25 1 -0.3632 0.5129 0.8906 26 1 -0.3633 0.5148 -0.8894 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6674 -1.7471 -1.2559 29 1 1.6918 -0.2022 -2.1405 30 1 3.9395 -1.3106 -2.0882 31 1 3.9488 0.2822 -1.2921 32 1 5.0733 -2.5651 1.9807 33 1 5.9437 -4.8629 0.5883 34 1 7.2488 -3.6532 0.5456 35 1 7.1897 -3.5012 3.0195 36 1 5.8847 -4.7108 3.0629 37 1 9.5513 -7.3094 4.4460 38 1 3.9905 0.1735 1.4450 39 1 3.8655 -1.4788 2.1052 40 1 0.3293 -2.1112 1.0944 41 1 1.9424 -2.9281 1.2748 42 1 2.2576 -2.0094 3.5246 43 1 0.4425 -1.9321 3.5360 44 1 2.0961 0.4063 3.1448 45 1 0.4389 0.2504 2.4178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336389955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:34 Heat of formation + Delta-G solvation = -36.451832 kcal Electronic energy + Delta-G solvation = -23007.221613 eV Core-core repulsion = 19831.118307 eV Total energy + Delta-G solvation = -3176.103307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05158 -40.41306 -37.09685 -36.39371 -35.06467 -34.43182 -32.01263 -30.26911 -28.90691 -26.78492 -26.59223 -24.63959 -24.09667 -22.71541 -21.91171 -20.95609 -19.40264 -18.97634 -18.61740 -17.21121 -16.86573 -16.61334 -16.28137 -15.93169 -15.51770 -15.40494 -15.03557 -14.95371 -14.63219 -14.59190 -14.08307 -13.70332 -13.48639 -13.32900 -13.10016 -13.04150 -12.47986 -12.40702 -12.21613 -12.18185 -12.11201 -11.99842 -11.76783 -11.63935 -11.53969 -11.39079 -11.10256 -10.83619 -10.79404 -10.68977 -10.20747 -9.45338 -8.30405 -6.37873 1.38243 1.41177 1.52433 1.64361 2.10236 2.36506 2.92813 3.04369 3.54717 3.63207 3.68285 3.99057 4.02236 4.07011 4.19711 4.29459 4.34919 4.41866 4.44918 4.48759 4.71637 4.72838 4.74430 4.75775 4.87339 4.90318 4.93191 5.00667 5.08525 5.12719 5.13654 5.19005 5.22056 5.36361 5.38530 5.41383 5.42667 5.56681 5.57733 5.65819 5.67434 5.94497 6.22451 6.68848 6.96434 7.26487 7.54251 8.86490 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.004246 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.637753 B = 6592.609152 C = 7510.182938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 H 0.085 0.915 4 C -0.121 4.121 5 C 0.124 3.876 6 N -0.621 5.621 7 C 0.699 3.301 8 O -0.641 6.641 9 N -0.734 5.734 10 C 0.164 3.836 11 C -0.009 4.009 12 C -0.539 4.539 13 H 0.028 0.972 14 C 0.005 3.995 15 N -0.950 5.950 16 Si 0.959 3.041 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.237 1.237 20 C 0.129 3.871 21 C -0.090 4.090 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.405 0.595 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.268 0.732 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.012 21.025 -1.271 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 H 0.103 0.897 4 C -0.159 4.159 5 C 0.002 3.998 6 N -0.358 5.358 7 C 0.400 3.600 8 O -0.523 6.523 9 N -0.391 5.391 10 C 0.040 3.960 11 C -0.047 4.047 12 C -0.578 4.578 13 H 0.047 0.953 14 C -0.192 4.192 15 N -0.590 5.590 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.160 1.160 20 C 0.007 3.993 21 C -0.091 4.091 22 C -0.175 4.175 23 C -0.183 4.183 24 C -0.154 4.154 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.243 0.757 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.651 20.559 -1.943 29.920 hybrid contribution 0.427 -0.673 0.680 1.047 sum -21.224 19.886 -1.263 29.112 Atomic orbital electron populations 1.21957 0.93980 1.01885 1.02598 1.20915 0.96382 0.99171 0.92371 0.89663 1.21933 0.93615 1.00871 0.99511 1.21548 0.95240 0.97746 0.85316 1.47278 1.48229 1.31539 1.08753 1.16094 0.79482 0.80494 0.83889 1.90851 1.66678 1.63752 1.31020 1.45319 1.45682 1.40593 1.07504 1.20878 0.89103 0.87602 0.98430 1.19619 0.96091 0.96170 0.92810 1.21226 1.23831 1.19205 0.93515 0.95329 1.26077 0.94421 0.94694 1.04023 1.70076 1.31080 1.28472 1.29375 0.85542 0.78229 0.80778 0.77360 1.18972 1.21065 1.15989 1.21634 0.93556 0.99975 0.84170 1.21900 0.93341 0.97188 0.96642 1.23034 1.00963 0.96163 0.97387 1.22890 1.02363 0.97324 0.95699 1.22946 1.02061 0.96043 0.94385 0.91128 0.91912 0.92989 0.93412 0.88958 0.91621 0.89815 0.75697 0.94353 0.94030 0.94479 0.94878 0.92278 0.89152 0.90423 0.88853 0.94701 0.90732 0.90816 0.90334 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.42 71.98 0.61 -0.86 16 2 C -0.07 -0.87 2.40 -10.83 -0.03 -0.90 16 3 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.12 -1.98 5.29 30.70 0.16 -1.82 16 5 C 0.12 2.71 6.39 86.36 0.55 3.26 16 6 N -0.62 -15.99 2.98 -837.26 -2.49 -18.48 16 7 C 0.70 25.15 8.30 179.05 1.49 26.64 16 8 O -0.64 -29.04 15.77 -3.97 -0.06 -29.11 16 9 N -0.73 -25.66 5.46 -478.54 -2.61 -28.27 16 10 C 0.16 7.16 5.62 86.38 0.49 7.64 16 11 C -0.01 -0.42 4.16 29.84 0.12 -0.29 16 12 C -0.54 -31.41 9.66 25.60 0.25 -31.17 16 13 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 14 C 0.00 0.29 5.47 84.66 0.46 0.75 16 15 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 16 Si 0.96 42.61 27.47 68.60 1.88 44.49 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 20 C 0.13 2.36 5.42 86.22 0.47 2.82 16 21 C -0.09 -1.31 0.78 -52.08 -0.04 -1.35 16 22 C -0.14 -2.42 6.64 31.00 0.21 -2.21 16 23 C -0.15 -2.09 7.73 31.16 0.24 -1.85 16 24 C -0.12 -1.27 7.03 31.00 0.22 -1.05 16 25 H 0.07 0.55 6.13 -2.39 -0.01 0.54 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.61 6.04 -2.39 -0.01 0.59 16 28 H 0.05 0.99 7.90 -2.39 -0.02 0.97 16 29 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.07 1.81 6.99 -2.39 -0.02 1.80 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.40 11.52 5.99 -92.71 -0.56 10.97 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 36 H 0.03 1.42 7.57 -2.38 -0.02 1.40 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.46 4.92 -2.38 -0.01 1.45 16 40 H 0.09 1.48 5.70 -2.39 -0.01 1.47 16 41 H 0.03 0.83 8.09 -2.39 -0.02 0.81 16 42 H 0.07 1.17 7.65 -2.38 -0.02 1.15 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 45 H 0.10 0.86 5.92 -2.38 -0.01 0.85 16 Total: -1.00 -73.92 339.32 2.57 -71.36 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.36 Total: 19.88 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.19 Total: -0.38 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -4.81 Total: -106.24 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.06 Total: -29.11 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Total: -73.92 2.57 -71.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336389955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.903 kcal (2) G-P(sol) polarization free energy of solvation -73.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds