Wall clock time and date at job start Tue Mar 31 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.28469 * 2 1 4 4 C 1.54381 * 110.40674 * 122.17859 * 2 1 3 5 5 N 1.48567 * 104.59170 * 142.79385 * 4 2 1 6 6 C 1.46904 * 110.99771 * 200.95855 * 5 4 2 7 7 C 1.48551 * 104.22102 * 320.51542 * 5 4 2 8 8 C 1.54258 * 110.32150 * 237.86695 * 2 1 3 9 9 H 1.08999 * 110.32556 * 359.97438 * 8 2 1 10 10 C 1.50697 * 110.31949 * 122.10860 * 8 2 1 11 11 O 1.21281 * 120.00291 * 34.30666 * 10 8 2 12 12 N 1.34775 * 119.99527 * 214.30455 * 10 8 2 13 13 C 1.46501 * 120.00102 * 184.78069 * 12 10 8 14 14 C 1.50707 * 109.46879 * 270.00138 * 13 12 10 15 15 H 1.07996 * 119.99968 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99688 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00303 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99710 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47459 * 89.99613 * 18 16 14 20 20 H 1.48500 * 109.47080 * 209.99947 * 18 16 14 21 21 H 1.48501 * 109.47270 * 329.99996 * 18 16 14 22 22 C 1.46500 * 120.00172 * 4.77900 * 12 10 8 23 23 C 1.52996 * 109.46910 * 84.54946 * 22 12 10 24 24 C 1.53011 * 117.51752 * 116.28531 * 23 22 12 25 25 C 1.53005 * 59.99915 * 107.48155 * 24 23 22 26 26 H 1.09002 * 109.47239 * 182.13900 * 1 2 3 27 27 H 1.09003 * 109.46775 * 302.13429 * 1 2 3 28 28 H 1.08990 * 109.46983 * 62.12814 * 1 2 3 29 29 H 1.09005 * 110.41494 * 261.56688 * 4 2 1 30 30 H 1.08999 * 110.41481 * 24.01497 * 4 2 1 31 31 H 1.08995 * 109.46908 * 60.12922 * 6 5 4 32 32 H 1.08998 * 109.46811 * 180.12591 * 6 5 4 33 33 H 1.09002 * 109.46986 * 300.12359 * 6 5 4 34 34 H 1.08998 * 110.41460 * 280.70454 * 7 5 4 35 35 H 1.08996 * 110.41586 * 158.25940 * 7 5 4 36 36 H 1.09004 * 109.47110 * 29.99671 * 13 12 10 37 37 H 1.08995 * 109.47620 * 149.99924 * 13 12 10 38 38 H 0.97000 * 119.99941 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47221 * 324.54938 * 22 12 10 40 40 H 1.09003 * 109.47124 * 204.54617 * 22 12 10 41 41 H 1.08997 * 115.55660 * 330.58470 * 23 22 12 42 42 H 1.08996 * 117.49433 * 214.96954 * 24 23 22 43 43 H 1.08997 * 117.49837 * 359.97438 * 24 23 22 44 44 H 1.09002 * 117.49297 * 252.51293 * 25 24 23 45 45 H 1.08997 * 117.52022 * 107.48124 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7706 1.2247 5 7 3.2721 -1.4806 0.7206 6 6 3.6119 -2.6192 1.5845 7 6 2.8829 -1.9401 -0.6373 8 6 2.0658 -0.7694 -1.2250 9 1 1.2388 -1.1474 -1.8260 10 6 2.9519 0.1220 -2.0563 11 8 3.6463 0.9584 -1.5186 12 7 2.9727 -0.0103 -3.3974 13 6 3.9096 0.7825 -4.1973 14 6 3.2594 2.0847 -4.5882 15 1 2.2492 2.2999 -4.2728 16 6 3.9543 3.0012 -5.3486 17 7 5.1846 2.7394 -5.7323 18 14 3.1485 4.6155 -5.8325 19 1 3.4270 5.6390 -4.7931 20 1 3.6965 5.0713 -7.1353 21 1 1.6815 4.4198 -5.9538 22 6 2.0584 -0.9470 -4.0553 23 6 0.7065 -0.2669 -4.2804 24 6 0.2508 -0.0610 -5.7265 25 6 -0.4267 -1.1200 -4.8542 26 1 -0.3634 -1.0270 0.0384 27 1 -0.3633 0.5466 0.8703 28 1 -0.3633 0.4804 -0.9084 29 1 2.3413 -0.0772 2.0203 30 1 1.3264 -1.4855 1.5802 31 1 2.7780 -3.3207 1.6057 32 1 4.4979 -3.1198 1.1939 33 1 3.8121 -2.2618 2.5946 34 1 2.2683 -2.8381 -0.5732 35 1 3.7689 -2.1273 -1.2439 36 1 4.8061 0.9856 -3.6114 37 1 4.1806 0.2277 -5.0955 38 1 5.6733 3.3841 -6.2675 39 1 1.9226 -1.8257 -3.4248 40 1 2.4770 -1.2498 -5.0151 41 1 0.4400 0.5013 -3.5546 42 1 -0.3154 0.8427 -5.9518 43 1 0.9143 -0.4097 -6.5177 44 1 -0.2088 -2.1656 -5.0718 45 1 -1.4384 -0.9132 -4.5056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342863988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:40 Heat of formation + Delta-G solvation = -5.604972 kcal Electronic energy + Delta-G solvation = -23429.472996 eV Core-core repulsion = 20254.707309 eV Total energy + Delta-G solvation = -3174.765686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.01784 -37.98276 -36.84422 -34.26436 -33.29063 -32.46497 -30.05554 -27.79271 -26.93588 -25.99268 -24.78681 -22.83873 -22.04693 -21.32809 -20.54777 -20.04114 -18.27902 -16.63233 -16.42501 -15.84712 -15.26324 -15.18089 -14.68282 -14.50937 -14.21902 -14.07908 -13.41543 -13.12247 -12.96040 -12.66224 -12.34902 -12.27733 -12.14223 -11.98455 -11.62044 -11.41992 -11.31493 -11.21584 -11.17249 -10.91140 -10.72487 -10.70205 -10.52706 -10.48553 -10.21785 -9.94368 -9.57056 -9.48116 -8.70522 -8.39336 -8.35331 -7.57876 -5.96279 -3.98818 3.35192 3.40651 3.41780 3.47777 3.91494 4.07775 4.20634 4.51018 4.63945 4.80482 4.97106 5.10710 5.19056 5.23853 5.26864 5.30385 5.37820 5.40372 5.46804 5.58083 5.59805 5.63108 5.70707 5.74019 5.81661 5.83265 5.87000 5.89681 5.98187 6.07795 6.16053 6.17521 6.26883 6.41181 6.50825 6.61339 6.86399 7.06044 7.15367 7.51566 7.65422 8.00835 8.33240 8.52345 9.00837 9.23157 9.65260 11.12176 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.005769 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.113386 B = 4852.646239 C = 5550.655366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 H 0.097 0.903 4 C 0.041 3.959 5 N -0.507 5.507 6 C 0.015 3.985 7 C 0.051 3.949 8 C -0.115 4.115 9 H 0.095 0.905 10 C 0.516 3.484 11 O -0.525 6.525 12 N -0.598 5.598 13 C 0.248 3.752 14 C -0.512 4.512 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.898 5.898 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.147 3.853 23 C -0.156 4.156 24 C -0.163 4.163 25 C -0.190 4.190 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.631 -12.563 8.439 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.115 0.885 4 C -0.086 4.086 5 N -0.231 5.231 6 C -0.134 4.134 7 C -0.077 4.077 8 C -0.137 4.137 9 H 0.114 0.886 10 C 0.302 3.698 11 O -0.400 6.400 12 N -0.330 5.330 13 C 0.129 3.871 14 C -0.551 4.551 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.538 5.538 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C 0.022 3.978 23 C -0.175 4.175 24 C -0.200 4.200 25 C -0.228 4.228 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.579 -11.693 8.603 17.392 hybrid contribution -1.163 0.401 -0.443 1.307 sum -10.742 -11.292 8.160 17.592 Atomic orbital electron populations 1.21859 0.94625 1.01377 1.02117 1.21866 0.94914 1.01343 0.92352 0.88511 1.23174 0.90744 0.97098 0.97626 1.65359 1.33422 1.22426 1.01849 1.22506 1.00370 0.92539 0.97989 1.22952 0.98851 0.94916 0.91025 1.22249 0.98342 0.96133 0.97014 0.88647 1.20003 0.83325 0.84041 0.82409 1.90672 1.42784 1.35184 1.71392 1.48207 1.37613 1.41389 1.05750 1.19267 0.88319 0.89786 0.89732 1.21394 1.00256 1.01690 1.31733 0.92466 1.24910 0.94829 0.98263 0.96186 1.69929 1.10242 1.35987 1.37618 0.86567 0.79421 0.84109 0.77718 1.20694 1.21300 1.20023 1.20979 0.87932 0.90791 0.98105 1.22786 0.94801 1.02014 0.97909 1.22882 1.03166 0.99805 0.94175 1.22964 0.97078 0.96713 1.06029 0.92943 0.92462 0.92178 0.90138 0.94037 0.95708 0.91306 0.91373 0.93397 0.89916 0.94091 0.95312 0.92903 0.91693 0.90465 0.87993 0.89278 0.88685 0.89174 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.92 37.16 0.33 -1.28 16 2 C -0.09 -1.24 3.15 -89.23 -0.28 -1.52 16 3 H 0.10 1.72 6.99 -51.93 -0.36 1.36 16 4 C 0.04 0.53 6.04 -2.18 -0.01 0.52 16 5 N -0.51 -7.28 5.66 -238.23 -1.35 -8.63 16 6 C 0.01 0.16 9.53 60.07 0.57 0.73 16 7 C 0.05 0.71 6.03 -2.18 -0.01 0.70 16 8 C -0.12 -1.78 2.35 -90.39 -0.21 -1.99 16 9 H 0.10 1.29 5.40 -51.93 -0.28 1.01 16 10 C 0.52 10.82 6.50 -10.99 -0.07 10.75 16 11 O -0.52 -13.54 15.53 5.56 0.09 -13.46 16 12 N -0.60 -12.61 2.47 -175.06 -0.43 -13.04 16 13 C 0.25 6.51 5.17 -5.19 -0.03 6.48 16 14 C -0.51 -14.47 9.39 -34.44 -0.32 -14.80 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 18 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 C 0.15 2.38 5.34 -4.04 -0.02 2.36 16 23 C -0.16 -2.41 5.46 -90.61 -0.49 -2.90 16 24 C -0.16 -2.44 10.18 -26.72 -0.27 -2.71 16 25 C -0.19 -2.30 10.25 -26.73 -0.27 -2.57 16 26 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.45 7.67 -51.93 -0.40 0.05 16 31 H 0.02 0.23 7.97 -51.93 -0.41 -0.18 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 35 H 0.08 1.25 7.85 -51.93 -0.41 0.85 16 36 H 0.04 1.22 7.49 -51.93 -0.39 0.84 16 37 H 0.03 0.76 7.86 -51.93 -0.41 0.36 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.06 0.86 6.51 -51.93 -0.34 0.52 16 40 H 0.08 1.25 7.57 -51.93 -0.39 0.86 16 41 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -32.99 360.31 -9.73 -42.72 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.99 Total: 0.65 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.20 Total: -4.62 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -1.04 Total: -47.91 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.99 -9.73 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342863988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.120 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds