Wall clock time and date at job start Tue Mar 31 2020 02:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.28469 * 2 1 4 4 C 1.54381 * 110.40674 * 122.17859 * 2 1 3 5 5 N 1.48567 * 104.59170 * 142.79385 * 4 2 1 6 6 C 1.46904 * 110.99771 * 200.95855 * 5 4 2 7 7 C 1.48551 * 104.22102 * 320.51542 * 5 4 2 8 8 C 1.54258 * 110.32150 * 237.86695 * 2 1 3 9 9 H 1.08999 * 110.32556 * 359.97438 * 8 2 1 10 10 C 1.50697 * 110.31949 * 122.10860 * 8 2 1 11 11 O 1.21281 * 120.00291 * 34.30666 * 10 8 2 12 12 N 1.34775 * 119.99527 * 214.30455 * 10 8 2 13 13 C 1.46501 * 120.00102 * 184.78069 * 12 10 8 14 14 C 1.50707 * 109.46879 * 270.00138 * 13 12 10 15 15 H 1.07996 * 119.99968 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99688 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00303 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99710 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47459 * 89.99613 * 18 16 14 20 20 H 1.48500 * 109.47080 * 209.99947 * 18 16 14 21 21 H 1.48501 * 109.47270 * 329.99996 * 18 16 14 22 22 C 1.46500 * 120.00172 * 4.77900 * 12 10 8 23 23 C 1.52996 * 109.46910 * 84.54946 * 22 12 10 24 24 C 1.53011 * 117.51752 * 116.28531 * 23 22 12 25 25 C 1.53005 * 59.99915 * 107.48155 * 24 23 22 26 26 H 1.09002 * 109.47239 * 182.13900 * 1 2 3 27 27 H 1.09003 * 109.46775 * 302.13429 * 1 2 3 28 28 H 1.08990 * 109.46983 * 62.12814 * 1 2 3 29 29 H 1.09005 * 110.41494 * 261.56688 * 4 2 1 30 30 H 1.08999 * 110.41481 * 24.01497 * 4 2 1 31 31 H 1.08995 * 109.46908 * 60.12922 * 6 5 4 32 32 H 1.08998 * 109.46811 * 180.12591 * 6 5 4 33 33 H 1.09002 * 109.46986 * 300.12359 * 6 5 4 34 34 H 1.08998 * 110.41460 * 280.70454 * 7 5 4 35 35 H 1.08996 * 110.41586 * 158.25940 * 7 5 4 36 36 H 1.09004 * 109.47110 * 29.99671 * 13 12 10 37 37 H 1.08995 * 109.47620 * 149.99924 * 13 12 10 38 38 H 0.97000 * 119.99941 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47221 * 324.54938 * 22 12 10 40 40 H 1.09003 * 109.47124 * 204.54617 * 22 12 10 41 41 H 1.08997 * 115.55660 * 330.58470 * 23 22 12 42 42 H 1.08996 * 117.49433 * 214.96954 * 24 23 22 43 43 H 1.08997 * 117.49837 * 359.97438 * 24 23 22 44 44 H 1.09002 * 117.49297 * 252.51293 * 25 24 23 45 45 H 1.08997 * 117.52022 * 107.48124 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7706 1.2247 5 7 3.2721 -1.4806 0.7206 6 6 3.6119 -2.6192 1.5845 7 6 2.8829 -1.9401 -0.6373 8 6 2.0658 -0.7694 -1.2250 9 1 1.2388 -1.1474 -1.8260 10 6 2.9519 0.1220 -2.0563 11 8 3.6463 0.9584 -1.5186 12 7 2.9727 -0.0103 -3.3974 13 6 3.9096 0.7825 -4.1973 14 6 3.2594 2.0847 -4.5882 15 1 2.2492 2.2999 -4.2728 16 6 3.9543 3.0012 -5.3486 17 7 5.1846 2.7394 -5.7323 18 14 3.1485 4.6155 -5.8325 19 1 3.4270 5.6390 -4.7931 20 1 3.6965 5.0713 -7.1353 21 1 1.6815 4.4198 -5.9538 22 6 2.0584 -0.9470 -4.0553 23 6 0.7065 -0.2669 -4.2804 24 6 0.2508 -0.0610 -5.7265 25 6 -0.4267 -1.1200 -4.8542 26 1 -0.3634 -1.0270 0.0384 27 1 -0.3633 0.5466 0.8703 28 1 -0.3633 0.4804 -0.9084 29 1 2.3413 -0.0772 2.0203 30 1 1.3264 -1.4855 1.5802 31 1 2.7780 -3.3207 1.6057 32 1 4.4979 -3.1198 1.1939 33 1 3.8121 -2.2618 2.5946 34 1 2.2683 -2.8381 -0.5732 35 1 3.7689 -2.1273 -1.2439 36 1 4.8061 0.9856 -3.6114 37 1 4.1806 0.2277 -5.0955 38 1 5.6733 3.3841 -6.2675 39 1 1.9226 -1.8257 -3.4248 40 1 2.4770 -1.2498 -5.0151 41 1 0.4400 0.5013 -3.5546 42 1 -0.3154 0.8427 -5.9518 43 1 0.9143 -0.4097 -6.5177 44 1 -0.2088 -2.1656 -5.0718 45 1 -1.4384 -0.9132 -4.5056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342863988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:39 Heat of formation + Delta-G solvation = -27.537947 kcal Electronic energy + Delta-G solvation = -23430.424081 eV Core-core repulsion = 20254.707309 eV Total energy + Delta-G solvation = -3175.716772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41188 -39.27039 -38.19990 -36.02400 -34.63581 -34.26903 -31.35756 -29.56385 -27.87333 -27.53570 -26.11354 -24.60240 -23.11776 -22.51154 -21.80540 -21.25958 -19.74980 -18.61670 -18.06399 -17.36640 -16.61974 -16.42638 -16.25986 -15.78152 -15.63565 -15.30155 -14.70279 -14.55643 -14.21956 -13.95424 -13.86969 -13.60804 -13.39624 -13.25193 -12.98422 -12.96321 -12.80022 -12.57164 -12.52439 -12.34409 -12.24700 -12.20310 -11.90555 -11.71751 -11.62091 -11.60395 -11.20088 -10.76094 -10.59772 -10.39620 -9.39553 -9.34570 -8.19194 -6.31074 1.33631 1.36995 1.46040 1.85858 2.31282 2.44478 3.04260 3.10254 3.11222 3.51201 3.64736 3.75537 3.96076 4.09835 4.18936 4.23921 4.29615 4.36410 4.46380 4.53922 4.56676 4.57108 4.64217 4.66234 4.80076 4.82496 4.86762 4.89118 4.90182 5.03198 5.04955 5.12907 5.14916 5.24582 5.27989 5.36061 5.38593 5.40787 5.62771 5.87415 5.92471 6.11533 6.15104 6.75173 6.86128 7.33423 7.58060 8.88242 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.005769 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.113386 B = 4852.646239 C = 5550.655366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.049 0.951 4 C 0.048 3.952 5 N -0.546 5.546 6 C 0.017 3.983 7 C 0.055 3.945 8 C -0.103 4.103 9 H 0.123 0.877 10 C 0.508 3.492 11 O -0.588 6.588 12 N -0.602 5.602 13 C 0.264 3.736 14 C -0.520 4.520 15 H 0.050 0.950 16 C 0.006 3.994 17 N -0.932 5.932 18 Si 0.960 3.040 19 H -0.283 1.283 20 H -0.275 1.275 21 H -0.263 1.263 22 C 0.143 3.857 23 C -0.177 4.177 24 C -0.188 4.188 25 C -0.141 4.141 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.062 0.938 36 H -0.009 1.009 37 H 0.020 0.980 38 H 0.265 0.735 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.831 -14.761 8.994 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 H 0.068 0.932 4 C -0.079 4.079 5 N -0.271 5.271 6 C -0.132 4.132 7 C -0.073 4.073 8 C -0.124 4.124 9 H 0.141 0.859 10 C 0.297 3.703 11 O -0.468 6.468 12 N -0.332 5.332 13 C 0.143 3.857 14 C -0.559 4.559 15 H 0.069 0.931 16 C -0.192 4.192 17 N -0.572 5.572 18 Si 0.785 3.215 19 H -0.210 1.210 20 H -0.200 1.200 21 H -0.187 1.187 22 C 0.021 3.979 23 C -0.196 4.196 24 C -0.225 4.225 25 C -0.178 4.178 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.009 0.991 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.135 0.865 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.821 -13.936 9.148 21.030 hybrid contribution -0.105 1.078 -0.604 1.241 sum -12.926 -12.858 8.544 20.134 Atomic orbital electron populations 1.21809 0.91751 1.03294 1.02285 1.21860 0.97226 0.98875 0.92832 0.93196 1.23140 0.90974 0.97346 0.96470 1.65290 1.34671 1.24456 1.02649 1.22531 1.01163 0.91897 0.97561 1.22947 0.98395 0.95355 0.90597 1.22249 0.97901 0.95625 0.96669 0.85942 1.21088 0.83012 0.83829 0.82361 1.90631 1.45548 1.38075 1.72522 1.48203 1.37568 1.41458 1.06007 1.18703 0.87885 0.90173 0.88978 1.21586 0.99953 1.02733 1.31621 0.93146 1.25789 0.95381 1.01886 0.96163 1.70049 1.11588 1.37340 1.38257 0.85528 0.79084 0.79338 0.77559 1.20968 1.19988 1.18690 1.21278 0.87265 0.90923 0.98457 1.22620 0.95799 1.03430 0.97749 1.22933 1.04307 1.01350 0.93890 1.23065 0.96446 0.96944 1.01330 0.90072 0.91268 0.93091 0.90803 0.90724 0.93354 0.91479 0.90779 0.89297 0.91976 0.99074 0.96198 0.92637 0.87741 0.90693 0.90042 0.90129 0.89312 0.86541 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.92 71.98 0.64 -2.02 16 2 C -0.09 -2.48 3.15 -9.90 -0.03 -2.51 16 3 H 0.05 1.87 6.99 -2.39 -0.02 1.86 16 4 C 0.05 1.14 6.04 86.45 0.52 1.67 16 5 N -0.55 -14.89 5.66 -907.61 -5.14 -20.03 16 6 C 0.02 0.32 9.53 127.69 1.22 1.54 16 7 C 0.06 1.42 6.03 86.45 0.52 1.94 16 8 C -0.10 -3.04 2.35 -10.64 -0.03 -3.07 16 9 H 0.12 2.91 5.40 -2.39 -0.01 2.89 16 10 C 0.51 22.14 6.50 87.66 0.57 22.71 16 11 O -0.59 -32.55 15.53 -3.03 -0.05 -32.60 16 12 N -0.60 -26.29 2.47 -826.16 -2.04 -28.32 16 13 C 0.26 14.71 5.17 85.63 0.44 15.16 16 14 C -0.52 -30.71 9.39 25.60 0.24 -30.47 16 15 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 16 C 0.01 0.35 5.46 84.66 0.46 0.81 16 17 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 18 Si 0.96 46.51 29.54 68.60 2.03 48.54 16 19 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 20 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 22 C 0.14 4.50 5.34 86.38 0.46 4.97 16 23 C -0.18 -5.19 5.46 -10.79 -0.06 -5.25 16 24 C -0.19 -5.37 10.18 30.60 0.31 -5.06 16 25 C -0.14 -2.83 10.25 30.60 0.31 -2.51 16 26 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.07 1.29 7.67 -2.39 -0.02 1.27 16 31 H 0.05 0.71 7.97 -2.39 -0.02 0.69 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.58 7.90 -2.39 -0.02 1.56 16 35 H 0.06 1.84 7.85 -2.39 -0.02 1.82 16 36 H -0.01 -0.57 7.49 -2.38 -0.02 -0.59 16 37 H 0.02 1.13 7.86 -2.39 -0.02 1.11 16 38 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.10 2.44 6.51 -2.39 -0.02 2.42 16 40 H 0.07 2.38 7.57 -2.39 -0.02 2.36 16 41 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.09 2.61 8.03 -2.39 -0.02 2.59 16 44 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -78.15 360.31 1.62 -76.53 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.94 Total: 15.68 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.59 Total: -2.09 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -6.89 Total: -106.06 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.05 Total: -32.60 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.15 1.62 -76.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342863988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.994 kcal (2) G-P(sol) polarization free energy of solvation -78.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds