Wall clock time and date at job start Tue Mar 31 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.03515 * 2 1 4 4 C 1.54467 * 110.00928 * 238.91873 * 2 1 3 5 5 C 1.55958 * 102.56944 * 263.66927 * 4 2 1 6 6 H 1.09003 * 112.77832 * 202.98670 * 5 4 2 7 7 C 1.53014 * 106.57892 * 78.45871 * 5 4 2 8 8 C 1.52682 * 110.68706 * 196.85122 * 7 5 4 9 9 C 1.53243 * 108.68058 * 61.96306 * 8 7 5 10 10 C 1.51585 * 108.12603 * 296.86203 * 9 8 7 11 11 C 1.51185 * 111.95881 * 59.53040 * 10 9 8 12 12 H 1.08994 * 108.58807 * 186.21141 * 11 10 9 13 13 N 1.46523 * 113.01054 * 65.79296 * 11 10 9 14 14 C 1.34777 * 126.01953 * 30.77930 * 13 11 10 15 15 O 1.21584 * 120.00487 * 4.95441 * 14 13 11 16 16 N 1.34785 * 120.00109 * 184.96028 * 14 13 11 17 17 C 1.46492 * 120.00069 * 174.86041 * 16 14 13 18 18 C 1.53005 * 109.46849 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.46868 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00158 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99851 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99703 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47135 * 89.99907 * 23 21 19 25 25 H 1.48497 * 109.47397 * 209.99992 * 23 21 19 26 26 H 1.48507 * 109.47059 * 330.00079 * 23 21 19 27 27 H 1.08991 * 109.47322 * 322.62489 * 1 2 3 28 28 H 1.09001 * 109.46965 * 82.62136 * 1 2 3 29 29 H 1.09000 * 109.46934 * 202.62061 * 1 2 3 30 30 H 1.09001 * 110.99576 * 145.32513 * 4 2 1 31 31 H 1.09000 * 110.64111 * 21.84757 * 4 2 1 32 32 H 1.08994 * 109.23298 * 317.15838 * 7 5 4 33 33 H 1.08996 * 109.23502 * 76.58344 * 7 5 4 34 34 H 1.09005 * 109.60293 * 181.72141 * 8 7 5 35 35 H 1.09008 * 109.60277 * 302.20116 * 8 7 5 36 36 H 1.08997 * 109.67609 * 56.54948 * 9 8 7 37 37 H 1.09004 * 109.67567 * 177.08342 * 9 8 7 38 38 H 1.08995 * 109.22959 * 298.54973 * 10 9 8 39 39 H 1.09004 * 108.29441 * 179.88030 * 10 9 8 40 40 H 0.97003 * 119.99343 * 354.86524 * 16 14 13 41 41 H 1.08993 * 109.47584 * 300.00183 * 17 16 14 42 42 H 1.09005 * 109.46681 * 60.00359 * 17 16 14 43 43 H 1.08993 * 109.47271 * 300.00490 * 18 17 16 44 44 H 1.09001 * 109.46616 * 60.00835 * 18 17 16 45 45 H 0.97007 * 120.00047 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9034 1.0241 0.0000 4 6 2.0585 -0.7493 -1.2431 5 6 2.3324 -2.1800 -0.6859 6 1 3.0612 -2.7318 -1.2798 7 6 0.9758 -2.8827 -0.6014 8 6 1.0599 -4.1109 0.3016 9 6 1.4366 -3.6557 1.7156 10 6 2.8142 -3.0258 1.6568 11 6 2.8533 -1.8381 0.7222 12 1 3.8852 -1.4978 0.6358 13 7 2.0317 -0.7170 1.1861 14 6 1.7754 -0.4005 2.4708 15 8 2.3155 -1.0177 3.3684 16 7 0.9201 0.6001 2.7607 17 6 0.5545 0.8708 4.1532 18 6 -0.4214 2.0481 4.2045 19 6 -0.7971 2.3271 5.6371 20 1 -0.3811 1.7252 6.4314 21 6 -1.6719 3.3507 5.9336 22 7 -1.9993 3.5944 7.1837 23 14 -2.3920 4.3913 4.5595 24 1 -3.6593 3.7786 4.0867 25 1 -2.6630 5.7608 5.0657 26 1 -1.4260 4.4619 3.4338 27 1 -0.3633 0.8166 0.6238 28 1 -0.3633 0.1320 -1.0192 29 1 -0.3633 -0.9486 0.3953 30 1 2.9786 -0.2951 -1.6110 31 1 1.3004 -0.7778 -2.0257 32 1 0.2373 -2.1902 -0.1977 33 1 0.6690 -3.1926 -1.6003 34 1 0.0934 -4.6146 0.3250 35 1 1.8210 -4.7927 -0.0781 36 1 0.7112 -2.9240 2.0710 37 1 1.4507 -4.5149 2.3862 38 1 3.5351 -3.7701 1.3187 39 1 3.0841 -2.6990 2.6611 40 1 0.5467 1.1408 2.0472 41 1 0.0819 -0.0123 4.5831 42 1 1.4506 1.1171 4.7228 43 1 0.0515 2.9311 3.7747 44 1 -1.3176 1.8022 3.6348 45 1 -2.6151 4.3144 7.3923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345838990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:58 Heat of formation + Delta-G solvation = -38.471752 kcal Electronic energy + Delta-G solvation = -23468.233076 eV Core-core repulsion = 20292.042179 eV Total energy + Delta-G solvation = -3176.190897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16635 -38.40466 -35.72589 -34.85749 -32.76133 -32.50652 -31.06878 -29.96974 -29.00623 -26.37682 -24.93188 -22.97231 -22.04059 -21.39027 -20.82862 -20.17812 -18.95181 -17.23846 -16.85985 -16.20786 -15.57902 -15.02958 -14.86761 -14.60493 -14.18283 -14.13681 -13.92840 -13.55020 -13.27508 -12.97918 -12.68108 -12.52677 -12.40877 -12.31477 -12.06565 -11.89132 -11.64426 -11.46869 -11.22389 -11.15432 -10.76432 -10.42017 -10.34064 -10.29602 -10.16681 -10.07658 -9.92481 -9.38592 -9.23185 -8.68912 -8.59644 -8.19594 -6.09363 -4.09017 2.86749 3.25718 3.33375 3.34792 3.55347 4.12171 4.28031 4.39032 4.53132 4.57804 4.76693 4.88032 5.01587 5.09439 5.19942 5.23648 5.26279 5.30159 5.37495 5.43544 5.49155 5.57526 5.64425 5.70037 5.76312 5.82215 5.94519 5.98769 6.09645 6.15229 6.22213 6.25104 6.28832 6.33665 6.46496 6.61434 6.65541 6.92643 7.18547 7.27442 7.42591 7.69885 8.33546 8.48187 8.95155 9.01114 9.50997 11.03781 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025989 B = 0.004291 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.126798 B = 6523.560790 C = 6979.835183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.126 3.874 3 H 0.073 0.927 4 C -0.125 4.125 5 C -0.097 4.097 6 H 0.095 0.905 7 C -0.126 4.126 8 C -0.120 4.120 9 C -0.110 4.110 10 C -0.137 4.137 11 C 0.168 3.832 12 H 0.058 0.942 13 N -0.630 5.630 14 C 0.721 3.279 15 O -0.587 6.587 16 N -0.743 5.743 17 C 0.148 3.852 18 C -0.021 4.021 19 C -0.521 4.521 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.899 5.899 23 Si 0.881 3.119 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.267 1.267 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.390 0.610 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.016 0.984 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 -11.613 -21.463 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 H 0.091 0.909 4 C -0.163 4.163 5 C -0.116 4.116 6 H 0.113 0.887 7 C -0.163 4.163 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.175 4.175 11 C 0.063 3.937 12 H 0.076 0.924 13 N -0.369 5.369 14 C 0.424 3.576 15 O -0.465 6.465 16 N -0.399 5.399 17 C 0.025 3.975 18 C -0.059 4.059 19 C -0.559 4.559 20 H 0.094 0.906 21 C -0.132 4.132 22 N -0.537 5.537 23 Si 0.709 3.291 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.225 0.775 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.034 0.966 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.458 -11.901 -20.536 24.879 hybrid contribution -0.703 1.016 -0.998 1.588 sum 6.755 -10.885 -21.534 25.056 Atomic orbital electron populations 1.22602 0.95058 1.03118 1.02603 1.21650 0.94263 0.96296 0.85644 0.90893 1.22999 1.01679 0.95410 0.96233 1.22436 0.97922 0.95651 0.95575 0.88653 1.21818 0.97070 0.97837 0.99561 1.21557 1.00984 0.97230 0.95937 1.21198 0.97481 1.00079 0.95982 1.21288 0.97606 0.95907 1.02660 1.20777 0.93557 0.86705 0.92614 0.92430 1.47535 1.54597 1.31384 1.03429 1.15512 0.80047 0.81072 0.81007 1.90817 1.55252 1.55690 1.44763 1.45766 1.48448 1.34800 1.10878 1.21355 0.98684 0.99037 0.78396 1.19787 0.94049 0.93162 0.98881 1.20919 1.27295 1.16818 0.90871 0.90581 1.24989 0.95936 0.96910 0.95402 1.69904 1.34852 1.31316 1.17655 0.86764 0.79763 0.79868 0.82753 1.20244 1.21272 1.19135 0.91995 0.91242 0.90760 0.90716 0.89923 0.90189 0.92352 0.92385 0.92260 0.92003 0.92226 0.91960 0.88173 0.77461 0.92302 0.92158 0.96149 0.96609 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.03 37.16 0.30 -1.43 16 2 C 0.13 1.28 3.08 -66.67 -0.21 1.07 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.13 -0.95 5.97 -24.38 -0.15 -1.09 16 5 C -0.10 -0.81 3.67 -88.52 -0.33 -1.14 16 6 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.13 -1.10 4.89 -26.89 -0.13 -1.23 16 8 C -0.12 -1.13 5.91 -26.77 -0.16 -1.29 16 9 C -0.11 -1.34 5.87 -27.32 -0.16 -1.50 16 10 C -0.14 -1.71 4.77 -28.36 -0.14 -1.84 16 11 C 0.17 1.94 2.88 -68.32 -0.20 1.74 16 12 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 13 N -0.63 -8.40 2.73 -163.13 -0.45 -8.85 16 14 C 0.72 12.67 7.52 -86.91 -0.65 12.01 16 15 O -0.59 -12.27 14.01 5.29 0.07 -12.19 16 16 N -0.74 -13.11 5.28 -65.23 -0.34 -13.46 16 17 C 0.15 3.14 5.62 -4.04 -0.02 3.11 16 18 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 19 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 20 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 23 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 27 H 0.06 0.67 6.18 -51.93 -0.32 0.35 16 28 H 0.07 0.53 7.63 -51.93 -0.40 0.13 16 29 H 0.07 0.82 5.65 -51.93 -0.29 0.53 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.52 7.35 -51.93 -0.38 0.13 16 32 H 0.08 0.80 3.91 -51.93 -0.20 0.59 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.06 0.92 7.50 -51.93 -0.39 0.53 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.61 5.66 -51.93 -0.29 1.31 16 40 H 0.39 6.03 5.29 -40.82 -0.22 5.81 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 44 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -31.92 331.49 -9.50 -41.42 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.50 Total: 3.68 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -2.38 Total: -5.36 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.02 Total: -49.06 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.92 -9.50 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345838990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.944 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds