Wall clock time and date at job start Tue Mar 31 2020 01:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.03515 * 2 1 4 4 C 1.54467 * 110.00928 * 238.91873 * 2 1 3 5 5 C 1.55958 * 102.56944 * 263.66927 * 4 2 1 6 6 H 1.09003 * 112.77832 * 202.98670 * 5 4 2 7 7 C 1.53014 * 106.57892 * 78.45871 * 5 4 2 8 8 C 1.52682 * 110.68706 * 196.85122 * 7 5 4 9 9 C 1.53243 * 108.68058 * 61.96306 * 8 7 5 10 10 C 1.51585 * 108.12603 * 296.86203 * 9 8 7 11 11 C 1.51185 * 111.95881 * 59.53040 * 10 9 8 12 12 H 1.08994 * 108.58807 * 186.21141 * 11 10 9 13 13 N 1.46523 * 113.01054 * 65.79296 * 11 10 9 14 14 C 1.34777 * 126.01953 * 30.77930 * 13 11 10 15 15 O 1.21584 * 120.00487 * 4.95441 * 14 13 11 16 16 N 1.34785 * 120.00109 * 184.96028 * 14 13 11 17 17 C 1.46492 * 120.00069 * 174.86041 * 16 14 13 18 18 C 1.53005 * 109.46849 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.46868 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00158 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99851 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99703 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47135 * 89.99907 * 23 21 19 25 25 H 1.48497 * 109.47397 * 209.99992 * 23 21 19 26 26 H 1.48507 * 109.47059 * 330.00079 * 23 21 19 27 27 H 1.08991 * 109.47322 * 322.62489 * 1 2 3 28 28 H 1.09001 * 109.46965 * 82.62136 * 1 2 3 29 29 H 1.09000 * 109.46934 * 202.62061 * 1 2 3 30 30 H 1.09001 * 110.99576 * 145.32513 * 4 2 1 31 31 H 1.09000 * 110.64111 * 21.84757 * 4 2 1 32 32 H 1.08994 * 109.23298 * 317.15838 * 7 5 4 33 33 H 1.08996 * 109.23502 * 76.58344 * 7 5 4 34 34 H 1.09005 * 109.60293 * 181.72141 * 8 7 5 35 35 H 1.09008 * 109.60277 * 302.20116 * 8 7 5 36 36 H 1.08997 * 109.67609 * 56.54948 * 9 8 7 37 37 H 1.09004 * 109.67567 * 177.08342 * 9 8 7 38 38 H 1.08995 * 109.22959 * 298.54973 * 10 9 8 39 39 H 1.09004 * 108.29441 * 179.88030 * 10 9 8 40 40 H 0.97003 * 119.99343 * 354.86524 * 16 14 13 41 41 H 1.08993 * 109.47584 * 300.00183 * 17 16 14 42 42 H 1.09005 * 109.46681 * 60.00359 * 17 16 14 43 43 H 1.08993 * 109.47271 * 300.00490 * 18 17 16 44 44 H 1.09001 * 109.46616 * 60.00835 * 18 17 16 45 45 H 0.97007 * 120.00047 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9034 1.0241 0.0000 4 6 2.0585 -0.7493 -1.2431 5 6 2.3324 -2.1800 -0.6859 6 1 3.0612 -2.7318 -1.2798 7 6 0.9758 -2.8827 -0.6014 8 6 1.0599 -4.1109 0.3016 9 6 1.4366 -3.6557 1.7156 10 6 2.8142 -3.0258 1.6568 11 6 2.8533 -1.8381 0.7222 12 1 3.8852 -1.4978 0.6358 13 7 2.0317 -0.7170 1.1861 14 6 1.7754 -0.4005 2.4708 15 8 2.3155 -1.0177 3.3684 16 7 0.9201 0.6001 2.7607 17 6 0.5545 0.8708 4.1532 18 6 -0.4214 2.0481 4.2045 19 6 -0.7971 2.3271 5.6371 20 1 -0.3811 1.7252 6.4314 21 6 -1.6719 3.3507 5.9336 22 7 -1.9993 3.5944 7.1837 23 14 -2.3920 4.3913 4.5595 24 1 -3.6593 3.7786 4.0867 25 1 -2.6630 5.7608 5.0657 26 1 -1.4260 4.4619 3.4338 27 1 -0.3633 0.8166 0.6238 28 1 -0.3633 0.1320 -1.0192 29 1 -0.3633 -0.9486 0.3953 30 1 2.9786 -0.2951 -1.6110 31 1 1.3004 -0.7778 -2.0257 32 1 0.2373 -2.1902 -0.1977 33 1 0.6690 -3.1926 -1.6003 34 1 0.0934 -4.6146 0.3250 35 1 1.8210 -4.7927 -0.0781 36 1 0.7112 -2.9240 2.0710 37 1 1.4507 -4.5149 2.3862 38 1 3.5351 -3.7701 1.3187 39 1 3.0841 -2.6990 2.6611 40 1 0.5467 1.1408 2.0472 41 1 0.0819 -0.0123 4.5831 42 1 1.4506 1.1171 4.7228 43 1 0.0515 2.9311 3.7747 44 1 -1.3176 1.8022 3.6348 45 1 -2.6151 4.3144 7.3923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345838990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:57 Heat of formation + Delta-G solvation = -58.771283 kcal Electronic energy + Delta-G solvation = -23469.113330 eV Core-core repulsion = 20292.042179 eV Total energy + Delta-G solvation = -3177.071151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16104 -39.67203 -36.85519 -36.35479 -34.74447 -33.48109 -32.36225 -31.25472 -30.11353 -27.12287 -26.77283 -24.10747 -22.89456 -22.65467 -22.25017 -21.22784 -20.14899 -18.98312 -18.26664 -17.22239 -16.85344 -16.32453 -16.30092 -15.74336 -15.54507 -15.43244 -15.26135 -14.70196 -14.63917 -14.29121 -13.85203 -13.51972 -13.36249 -13.28028 -13.10577 -13.03994 -12.90517 -12.69066 -12.38557 -12.18568 -12.14967 -11.98486 -11.77629 -11.70420 -11.53310 -11.23994 -11.09968 -10.91660 -10.80080 -10.52109 -10.13983 -9.40014 -8.31166 -6.38599 1.37163 1.40221 1.51520 1.66149 2.18808 2.35702 3.02342 3.03565 3.55585 3.62287 3.83873 4.00980 4.08261 4.19740 4.28412 4.31508 4.41220 4.42082 4.48367 4.53726 4.56077 4.63940 4.72061 4.74337 4.84639 4.93757 5.04263 5.06236 5.07732 5.12120 5.17488 5.27824 5.30572 5.33870 5.36447 5.37832 5.41325 5.46849 5.64649 5.69987 5.73054 6.16979 6.23275 6.68165 7.06109 7.25856 7.64414 8.85770 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025989 B = 0.004291 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.126798 B = 6523.560790 C = 6979.835183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.115 3.885 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.085 4.085 6 H 0.123 0.877 7 C -0.126 4.126 8 C -0.114 4.114 9 C -0.108 4.108 10 C -0.134 4.134 11 C 0.156 3.844 12 H 0.059 0.941 13 N -0.624 5.624 14 C 0.715 3.285 15 O -0.629 6.629 16 N -0.736 5.736 17 C 0.166 3.834 18 C -0.009 4.009 19 C -0.539 4.539 20 H 0.028 0.972 21 C 0.006 3.994 22 N -0.950 5.950 23 Si 0.959 3.041 24 H -0.263 1.263 25 H -0.284 1.284 26 H -0.239 1.239 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.403 0.597 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -11.375 -26.578 29.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.104 4.104 6 H 0.141 0.859 7 C -0.163 4.163 8 C -0.151 4.151 9 C -0.146 4.146 10 C -0.172 4.172 11 C 0.052 3.948 12 H 0.077 0.923 13 N -0.362 5.362 14 C 0.417 3.583 15 O -0.511 6.511 16 N -0.393 5.393 17 C 0.041 3.959 18 C -0.047 4.047 19 C -0.578 4.578 20 H 0.046 0.954 21 C -0.191 4.191 22 N -0.590 5.590 23 Si 0.781 3.219 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.162 1.162 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.241 0.759 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.301 -11.678 -25.724 29.179 hybrid contribution -0.586 0.846 0.702 1.246 sum 6.714 -10.832 -25.022 28.081 Atomic orbital electron populations 1.22593 0.94660 1.01791 1.04095 1.22001 0.94694 0.96714 0.85386 0.90435 1.23018 1.03034 0.93948 0.95106 1.22463 0.98151 0.96657 0.93148 0.85873 1.21841 0.96979 0.97029 1.00483 1.21524 1.01609 0.98112 0.93853 1.21146 0.96503 0.98854 0.98115 1.21218 0.98160 0.97090 1.00751 1.21066 0.93669 0.85637 0.94386 0.92298 1.47563 1.53972 1.31920 1.02736 1.15682 0.79747 0.80586 0.82256 1.90803 1.56710 1.56861 1.46753 1.45429 1.48892 1.35469 1.09555 1.20841 0.97152 0.97543 0.80339 1.19613 0.95054 0.94149 0.95840 1.21216 1.27489 1.16573 0.92472 0.95354 1.26060 0.96190 0.98362 0.98491 1.70074 1.35927 1.32402 1.20558 0.85546 0.79610 0.77364 0.79416 1.18816 1.21012 1.16236 0.93277 0.88226 0.92191 0.89180 0.87437 0.91540 0.89728 0.92144 0.90482 0.95523 0.92905 0.89680 0.92564 0.75852 0.94305 0.94338 0.94802 0.94839 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 8.03 71.98 0.58 -2.34 16 2 C 0.11 2.00 3.08 45.32 0.14 2.14 16 3 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.11 -1.17 5.97 32.12 0.19 -0.98 16 5 C -0.09 -1.09 3.67 -9.43 -0.03 -1.12 16 6 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 7 C -0.13 -1.75 4.89 30.49 0.15 -1.60 16 8 C -0.11 -1.90 5.91 30.57 0.18 -1.72 16 9 C -0.11 -2.68 5.87 30.21 0.18 -2.51 16 10 C -0.13 -3.37 4.77 29.54 0.14 -3.23 16 11 C 0.16 3.37 2.88 44.73 0.13 3.49 16 12 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 13 N -0.62 -16.17 2.73 -788.29 -2.15 -18.32 16 14 C 0.72 25.83 7.52 179.05 1.35 27.18 16 15 O -0.63 -28.03 14.01 -3.98 -0.06 -28.09 16 16 N -0.74 -26.28 5.28 -478.53 -2.53 -28.80 16 17 C 0.17 7.32 5.62 86.38 0.49 7.81 16 18 C -0.01 -0.41 4.16 29.85 0.12 -0.28 16 19 C -0.54 -31.62 9.66 25.60 0.25 -31.37 16 20 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 21 C 0.01 0.36 5.47 84.66 0.46 0.82 16 22 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 23 Si 0.96 42.90 27.47 68.60 1.88 44.79 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.24 -9.60 6.54 99.48 0.65 -8.94 16 27 H 0.05 0.94 6.18 -2.39 -0.01 0.93 16 28 H 0.10 1.07 7.63 -2.39 -0.02 1.05 16 29 H 0.06 1.22 5.65 -2.39 -0.01 1.21 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.67 7.35 -2.39 -0.02 0.66 16 32 H 0.07 1.14 3.91 -2.39 -0.01 1.13 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.03 0.83 7.50 -2.39 -0.02 0.81 16 37 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 1.93 5.66 -2.38 -0.01 1.91 16 40 H 0.40 12.04 5.29 -92.71 -0.49 11.55 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 44 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 45 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -74.73 331.49 2.19 -72.54 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.43 Total: 21.23 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 4.32 Total: -3.71 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -4.38 Total: -106.76 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.06 Total: -28.09 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.79 kcal Total: -74.73 2.19 -72.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345838990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.772 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds