Wall clock time and date at job start Tue Mar 31 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.70151 * 2 1 4 4 C 1.54208 * 110.64535 * 236.96939 * 2 1 3 5 5 N 1.47166 * 106.48825 * 269.46422 * 4 2 1 6 6 C 1.34779 * 125.75162 * 162.38432 * 5 4 2 7 7 O 1.21578 * 120.00409 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99586 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46998 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46869 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00352 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99891 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99888 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46766 * 90.00371 * 15 13 11 17 17 H 1.48500 * 109.47065 * 210.00046 * 15 13 11 18 18 H 1.48497 * 109.47475 * 330.00326 * 15 13 11 19 19 C 1.46092 * 108.50389 * 342.64719 * 5 4 2 20 20 H 1.09001 * 104.84548 * 111.50076 * 19 5 4 21 21 C 1.50048 * 113.56782 * 225.47778 * 19 5 4 22 22 C 1.52519 * 112.71437 * 89.92231 * 21 19 5 23 23 C 1.53269 * 108.22557 * 56.00772 * 22 21 19 24 24 C 1.52285 * 108.55434 * 293.95350 * 23 22 21 25 25 C 1.51235 * 109.27778 * 359.24643 * 19 5 4 26 26 H 1.08993 * 110.04982 * 135.76540 * 25 19 5 27 27 H 1.09000 * 109.46726 * 181.58200 * 1 2 3 28 28 H 1.09000 * 109.47294 * 301.57577 * 1 2 3 29 29 H 1.08997 * 109.47029 * 61.58299 * 1 2 3 30 30 H 1.08998 * 110.05462 * 150.21185 * 4 2 1 31 31 H 1.08996 * 110.10289 * 28.74220 * 4 2 1 32 32 H 0.96995 * 119.99956 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47032 * 300.00307 * 9 8 6 34 34 H 1.08995 * 109.46853 * 59.99978 * 9 8 6 35 35 H 1.09004 * 109.47115 * 299.99810 * 10 9 8 36 36 H 1.08996 * 109.47245 * 59.99771 * 10 9 8 37 37 H 0.97000 * 119.99728 * 179.97438 * 14 13 11 38 38 H 1.09000 * 108.83336 * 329.09305 * 21 19 5 39 39 H 1.08995 * 108.74929 * 210.69749 * 21 19 5 40 40 H 1.08998 * 109.71576 * 296.32020 * 22 21 19 41 41 H 1.09007 * 109.74451 * 175.70585 * 22 21 19 42 42 H 1.08988 * 109.62450 * 174.22870 * 23 22 21 43 43 H 1.09008 * 109.61795 * 53.66741 * 23 22 21 44 44 H 1.09002 * 108.90842 * 298.39015 * 24 23 22 45 45 H 1.09001 * 108.90992 * 179.86210 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9154 1.0197 0.0000 4 6 2.0737 -0.7866 -1.2098 5 7 2.2333 -2.1801 -0.7644 6 6 2.3589 -3.2544 -1.5687 7 8 2.4851 -4.3633 -1.0865 8 7 2.3444 -3.0993 -2.9074 9 6 2.4803 -4.2670 -3.7816 10 6 2.4331 -3.8178 -5.2434 11 6 2.5723 -5.0191 -6.1427 12 1 2.6837 -6.0043 -5.7145 13 6 2.5574 -4.8604 -7.5123 14 7 2.4222 -3.6607 -8.0338 15 14 2.7306 -6.3494 -8.6269 16 1 1.3854 -6.9031 -8.9256 17 1 3.3919 -5.9452 -9.8936 18 1 3.5519 -7.3834 -7.9477 19 6 2.2265 -2.2037 0.6963 20 1 1.2963 -2.7053 0.9631 21 6 3.3094 -3.0575 1.2876 22 6 4.5986 -2.2826 1.5399 23 6 4.2698 -1.0842 2.4370 24 6 3.3694 -0.1314 1.6621 25 6 2.0773 -0.7920 1.2177 26 1 1.3517 -0.7686 2.0306 27 1 -0.3633 -1.0273 0.0284 28 1 -0.3634 0.5381 0.8755 29 1 -0.3633 0.4890 -0.9038 30 1 3.0370 -0.3800 -1.5177 31 1 1.3660 -0.7375 -2.0373 32 1 2.2441 -2.2145 -3.2921 33 1 3.4321 -4.7601 -3.5839 34 1 1.6637 -4.9625 -3.5883 35 1 1.4815 -3.3245 -5.4414 36 1 3.2499 -3.1224 -5.4364 37 1 2.4121 -3.5491 -8.9973 38 1 3.5214 -3.8801 0.6046 39 1 2.9549 -3.4681 2.2330 40 1 5.0080 -1.9314 0.5927 41 1 5.3239 -2.9264 2.0376 42 1 5.1907 -0.5722 2.7160 43 1 3.7533 -1.4286 3.3331 44 1 3.9054 0.2238 0.7820 45 1 3.1299 0.7223 2.2961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345851874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:18 Heat of formation + Delta-G solvation = -56.091476 kcal Electronic energy + Delta-G solvation = -22814.202878 eV Core-core repulsion = 19637.247932 eV Total energy + Delta-G solvation = -3176.954946 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93782 -38.50778 -35.63495 -34.80940 -33.24144 -32.78036 -30.48534 -29.72817 -28.93322 -26.47388 -24.72282 -23.11569 -22.88160 -21.03611 -20.71162 -20.01151 -18.79221 -17.39166 -16.36233 -16.22586 -15.42085 -15.21327 -14.78952 -14.51031 -14.44710 -14.17594 -13.91595 -13.44442 -13.11138 -13.09745 -12.77657 -12.54520 -12.38539 -12.25054 -12.05067 -11.66824 -11.47233 -11.30426 -11.16060 -11.01406 -10.87432 -10.62553 -10.60877 -10.32277 -10.25601 -10.16354 -9.67740 -9.45076 -9.20323 -8.60427 -8.41528 -8.08036 -6.07285 -4.09723 2.94949 3.31118 3.37120 3.41876 3.61070 4.14120 4.29084 4.40245 4.48922 4.58622 4.79222 4.83542 4.99641 5.09254 5.17872 5.29568 5.29852 5.32994 5.36023 5.42628 5.54474 5.64116 5.66051 5.70336 5.78449 5.85036 5.89997 5.98304 6.03967 6.09414 6.15198 6.28080 6.31902 6.42984 6.44681 6.72533 6.80422 7.06840 7.39941 7.59805 7.65911 7.92092 8.28545 8.44677 8.95344 9.05716 9.54876 11.04437 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028263 B = 0.003499 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.473767 B = 8001.418589 C = 8502.895101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.090 0.910 4 C 0.103 3.897 5 N -0.631 5.631 6 C 0.718 3.282 7 O -0.593 6.593 8 N -0.737 5.737 9 C 0.140 3.860 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.172 3.828 20 H 0.043 0.957 21 C -0.137 4.137 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.110 4.110 25 C -0.082 4.082 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.392 0.608 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 11.450 20.193 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.371 5.371 6 C 0.421 3.579 7 O -0.472 6.472 8 N -0.391 5.391 9 C 0.018 3.982 10 C -0.024 4.024 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C 0.067 3.933 20 H 0.061 0.939 21 C -0.175 4.175 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.101 4.101 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.225 0.775 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.231 10.605 20.285 22.891 hybrid contribution -0.032 -0.226 -0.984 1.010 sum -0.263 10.379 19.301 21.916 Atomic orbital electron populations 1.21823 0.94147 1.02338 1.01908 1.22363 0.96369 0.99135 0.93967 0.89176 1.22083 1.00509 0.82204 0.97308 1.47347 1.78172 1.05659 1.05898 1.15529 0.78115 0.82906 0.81385 1.90829 1.58465 1.23258 1.74655 1.45575 1.77585 1.12108 1.03793 1.21585 1.00403 0.85610 0.90632 1.19317 0.97744 0.97571 0.87774 1.21056 1.50426 0.93430 0.90946 0.92218 1.24995 0.95044 0.96012 0.98248 1.69960 1.50164 1.21444 1.11811 0.86511 0.78306 0.82792 0.79943 1.20574 1.21194 1.19707 1.19669 0.98966 0.95146 0.79479 0.93879 1.21276 0.94647 0.99820 1.01720 1.21453 0.97421 0.96798 0.99618 1.21458 0.99112 0.96665 0.98401 1.21197 0.95274 0.98041 1.00207 1.21362 0.97904 0.93354 0.97463 0.89563 0.92329 0.92410 0.92181 0.91941 0.90919 0.77465 0.92803 0.92820 0.96040 0.96016 0.92890 0.88389 0.91783 0.92103 0.92068 0.92053 0.91974 0.91940 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.07 37.16 0.34 -0.84 16 2 C -0.10 -0.84 2.95 -88.81 -0.26 -1.10 16 3 H 0.09 0.62 7.74 -51.93 -0.40 0.22 16 4 C 0.10 1.13 5.97 -3.05 -0.02 1.11 16 5 N -0.63 -9.05 3.22 -173.56 -0.56 -9.61 16 6 C 0.72 13.39 8.26 -86.91 -0.72 12.67 16 7 O -0.59 -13.03 14.46 5.30 0.08 -12.96 16 8 N -0.74 -13.86 5.52 -65.23 -0.36 -14.22 16 9 C 0.14 3.12 5.61 -4.04 -0.02 3.09 16 10 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 11 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 15 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.17 2.13 2.59 -70.51 -0.18 1.95 16 20 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 21 C -0.14 -1.74 5.40 -28.44 -0.15 -1.90 16 22 C -0.12 -1.24 6.01 -26.84 -0.16 -1.40 16 23 C -0.12 -0.99 5.94 -26.96 -0.16 -1.15 16 24 C -0.11 -0.87 5.04 -27.72 -0.14 -1.01 16 25 C -0.08 -0.73 2.67 -90.95 -0.24 -0.97 16 26 H 0.09 0.68 7.89 -51.93 -0.41 0.27 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.79 7.34 -51.93 -0.38 0.41 16 32 H 0.39 6.54 7.11 -40.82 -0.29 6.25 16 33 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.10 1.63 5.51 -51.93 -0.29 1.34 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.06 0.46 8.14 -51.94 -0.42 0.04 16 43 H 0.06 0.49 8.13 -51.92 -0.42 0.06 16 44 H 0.06 0.53 7.79 -51.93 -0.40 0.12 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -31.59 347.97 -10.21 -41.81 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.05 Total: 1.51 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.28 Total: -2.73 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.18 Total: -49.42 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.59 -10.21 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345851874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.286 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds