Wall clock time and date at job start Tue Mar 31 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.70151 * 2 1 4 4 C 1.54208 * 110.64535 * 236.96939 * 2 1 3 5 5 N 1.47166 * 106.48825 * 269.46422 * 4 2 1 6 6 C 1.34779 * 125.75162 * 162.38432 * 5 4 2 7 7 O 1.21578 * 120.00409 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99586 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46998 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46869 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00352 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99891 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99888 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46766 * 90.00371 * 15 13 11 17 17 H 1.48500 * 109.47065 * 210.00046 * 15 13 11 18 18 H 1.48497 * 109.47475 * 330.00326 * 15 13 11 19 19 C 1.46092 * 108.50389 * 342.64719 * 5 4 2 20 20 H 1.09001 * 104.84548 * 111.50076 * 19 5 4 21 21 C 1.50048 * 113.56782 * 225.47778 * 19 5 4 22 22 C 1.52519 * 112.71437 * 89.92231 * 21 19 5 23 23 C 1.53269 * 108.22557 * 56.00772 * 22 21 19 24 24 C 1.52285 * 108.55434 * 293.95350 * 23 22 21 25 25 C 1.51235 * 109.27778 * 359.24643 * 19 5 4 26 26 H 1.08993 * 110.04982 * 135.76540 * 25 19 5 27 27 H 1.09000 * 109.46726 * 181.58200 * 1 2 3 28 28 H 1.09000 * 109.47294 * 301.57577 * 1 2 3 29 29 H 1.08997 * 109.47029 * 61.58299 * 1 2 3 30 30 H 1.08998 * 110.05462 * 150.21185 * 4 2 1 31 31 H 1.08996 * 110.10289 * 28.74220 * 4 2 1 32 32 H 0.96995 * 119.99956 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47032 * 300.00307 * 9 8 6 34 34 H 1.08995 * 109.46853 * 59.99978 * 9 8 6 35 35 H 1.09004 * 109.47115 * 299.99810 * 10 9 8 36 36 H 1.08996 * 109.47245 * 59.99771 * 10 9 8 37 37 H 0.97000 * 119.99728 * 179.97438 * 14 13 11 38 38 H 1.09000 * 108.83336 * 329.09305 * 21 19 5 39 39 H 1.08995 * 108.74929 * 210.69749 * 21 19 5 40 40 H 1.08998 * 109.71576 * 296.32020 * 22 21 19 41 41 H 1.09007 * 109.74451 * 175.70585 * 22 21 19 42 42 H 1.08988 * 109.62450 * 174.22870 * 23 22 21 43 43 H 1.09008 * 109.61795 * 53.66741 * 23 22 21 44 44 H 1.09002 * 108.90842 * 298.39015 * 24 23 22 45 45 H 1.09001 * 108.90992 * 179.86210 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9154 1.0197 0.0000 4 6 2.0737 -0.7866 -1.2098 5 7 2.2333 -2.1801 -0.7644 6 6 2.3589 -3.2544 -1.5687 7 8 2.4851 -4.3633 -1.0865 8 7 2.3444 -3.0993 -2.9074 9 6 2.4803 -4.2670 -3.7816 10 6 2.4331 -3.8178 -5.2434 11 6 2.5723 -5.0191 -6.1427 12 1 2.6837 -6.0043 -5.7145 13 6 2.5574 -4.8604 -7.5123 14 7 2.4222 -3.6607 -8.0338 15 14 2.7306 -6.3494 -8.6269 16 1 1.3854 -6.9031 -8.9256 17 1 3.3919 -5.9452 -9.8936 18 1 3.5519 -7.3834 -7.9477 19 6 2.2265 -2.2037 0.6963 20 1 1.2963 -2.7053 0.9631 21 6 3.3094 -3.0575 1.2876 22 6 4.5986 -2.2826 1.5399 23 6 4.2698 -1.0842 2.4370 24 6 3.3694 -0.1314 1.6621 25 6 2.0773 -0.7920 1.2177 26 1 1.3517 -0.7686 2.0306 27 1 -0.3633 -1.0273 0.0284 28 1 -0.3634 0.5381 0.8755 29 1 -0.3633 0.4890 -0.9038 30 1 3.0370 -0.3800 -1.5177 31 1 1.3660 -0.7375 -2.0373 32 1 2.2441 -2.2145 -3.2921 33 1 3.4321 -4.7601 -3.5839 34 1 1.6637 -4.9625 -3.5883 35 1 1.4815 -3.3245 -5.4414 36 1 3.2499 -3.1224 -5.4364 37 1 2.4121 -3.5491 -8.9973 38 1 3.5214 -3.8801 0.6046 39 1 2.9549 -3.4681 2.2330 40 1 5.0080 -1.9314 0.5927 41 1 5.3239 -2.9264 2.0376 42 1 5.1907 -0.5722 2.7160 43 1 3.7533 -1.4286 3.3331 44 1 3.9054 0.2238 0.7820 45 1 3.1299 0.7223 2.2961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345851874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:17 Heat of formation + Delta-G solvation = -74.931595 kcal Electronic energy + Delta-G solvation = -22815.019847 eV Core-core repulsion = 19637.247932 eV Total energy + Delta-G solvation = -3177.771914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.01339 -39.83615 -36.67815 -36.45923 -34.80288 -34.25536 -31.89246 -30.68219 -30.24737 -27.48724 -26.55553 -24.21301 -23.74784 -22.87307 -21.66473 -21.12885 -19.93815 -18.69692 -18.39740 -17.31670 -16.80480 -16.51340 -16.36961 -15.71176 -15.53258 -15.27057 -15.20362 -14.64502 -14.62283 -14.29322 -13.88339 -13.68893 -13.41747 -13.30381 -13.14806 -12.97492 -12.91117 -12.53082 -12.49420 -12.28209 -12.18766 -12.09445 -11.77049 -11.64976 -11.46680 -11.34700 -11.15685 -10.97163 -10.73831 -10.61084 -10.14341 -9.39676 -8.24929 -6.35506 1.41137 1.42086 1.53232 1.63973 2.11913 2.40329 3.06972 3.09721 3.41911 3.52419 3.74765 4.00849 4.05708 4.17263 4.31245 4.37663 4.44787 4.47991 4.48819 4.53116 4.60914 4.67400 4.74334 4.81518 4.82899 4.87896 4.97293 5.08803 5.13615 5.18130 5.20268 5.27177 5.28682 5.35096 5.37811 5.46759 5.52491 5.55785 5.56258 5.67334 5.78176 6.09329 6.16560 6.77113 6.99919 7.33770 7.56385 8.87142 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028263 B = 0.003499 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.473767 B = 8001.418589 C = 8502.895101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.119 0.881 4 C 0.092 3.908 5 N -0.626 5.626 6 C 0.713 3.287 7 O -0.632 6.632 8 N -0.733 5.733 9 C 0.162 3.838 10 C 0.026 3.974 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.008 3.992 14 N -0.926 5.926 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.267 1.267 19 C 0.167 3.833 20 H 0.026 0.974 21 C -0.135 4.135 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.108 4.108 25 C -0.075 4.075 26 H 0.105 0.895 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.403 0.597 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.266 0.734 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 13.178 21.392 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.137 0.863 4 C -0.031 4.031 5 N -0.364 5.364 6 C 0.415 3.585 7 O -0.514 6.514 8 N -0.388 5.388 9 C 0.038 3.962 10 C -0.011 4.011 11 C -0.586 4.586 12 H 0.077 0.923 13 C -0.191 4.191 14 N -0.565 5.565 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.191 1.191 19 C 0.064 3.936 20 H 0.044 0.956 21 C -0.174 4.174 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.094 4.094 26 H 0.123 0.877 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.238 0.762 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.285 12.391 21.513 24.828 hybrid contribution -0.027 -0.750 -1.316 1.515 sum -0.312 11.641 20.197 23.314 Atomic orbital electron populations 1.21821 0.93861 1.01245 1.03120 1.22392 0.96486 0.99864 0.91969 0.86280 1.22413 1.01294 0.80485 0.98895 1.47378 1.76356 1.06050 1.06596 1.15659 0.78051 0.83487 0.81316 1.90802 1.60103 1.25284 1.75252 1.45283 1.78036 1.11621 1.03891 1.21072 0.99281 0.86372 0.89510 1.19105 0.96238 0.96478 0.89301 1.21447 1.50962 0.94168 0.92004 0.92345 1.25874 0.94378 0.99105 0.99726 1.70060 1.50584 1.23467 1.12433 0.85427 0.78621 0.79049 0.77846 1.19707 1.20364 1.19109 1.19951 0.97813 0.97643 0.78219 0.95620 1.21208 0.96111 0.98966 1.01069 1.21422 0.96138 0.97894 0.99549 1.21443 1.00110 0.95489 0.98060 1.21216 0.94243 0.98519 1.00516 1.21382 0.99322 0.90682 0.98006 0.87666 0.94603 0.90310 0.91863 0.91076 0.90941 0.76198 0.93964 0.93946 0.97408 0.97406 0.92491 0.92789 0.90723 0.93831 0.91849 0.90600 0.90975 0.92305 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.07 71.98 0.65 -1.33 16 2 C -0.09 -1.23 2.95 -9.62 -0.03 -1.26 16 3 H 0.12 1.09 7.74 -2.38 -0.02 1.08 16 4 C 0.09 1.90 5.97 86.66 0.52 2.42 16 5 N -0.63 -18.15 3.22 -821.27 -2.65 -20.80 16 6 C 0.71 27.63 8.26 179.05 1.48 29.10 16 7 O -0.63 -29.32 14.46 -3.96 -0.06 -29.37 16 8 N -0.73 -28.56 5.52 -478.54 -2.64 -31.20 16 9 C 0.16 7.48 5.61 86.38 0.48 7.96 16 10 C 0.03 1.38 5.09 29.85 0.15 1.53 16 11 C -0.55 -31.36 9.11 25.60 0.23 -31.12 16 12 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 13 C 0.01 0.46 5.46 84.66 0.46 0.92 16 14 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 15 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C 0.17 4.10 2.59 43.54 0.11 4.21 16 20 H 0.03 0.71 8.05 -2.39 -0.02 0.69 16 21 C -0.14 -3.52 5.40 29.48 0.16 -3.36 16 22 C -0.11 -2.35 6.01 30.52 0.18 -2.16 16 23 C -0.11 -1.57 5.94 30.45 0.18 -1.39 16 24 C -0.11 -1.30 5.04 29.95 0.15 -1.15 16 25 C -0.07 -1.13 2.67 -11.01 -0.03 -1.16 16 26 H 0.11 1.27 7.89 -2.39 -0.02 1.25 16 27 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.52 7.34 -2.39 -0.02 1.50 16 32 H 0.40 13.77 7.11 -92.71 -0.66 13.11 16 33 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.05 1.91 5.51 -2.39 -0.01 1.90 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 0.89 8.13 -2.38 -0.02 0.87 16 44 H 0.06 0.79 7.79 -2.39 -0.02 0.77 16 45 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -70.22 347.97 1.97 -68.26 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.29 Total: 18.23 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 4.71 Total: 3.20 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -5.00 Total: -106.57 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.06 Total: -29.37 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -70.22 1.97 -68.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345851874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.675 kcal (2) G-P(sol) polarization free energy of solvation -70.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds