Wall clock time and date at job start Tue Mar 31 2020 02:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.87443 * 2 1 4 4 C 1.54325 * 109.88128 * 121.01569 * 2 1 3 5 5 C 1.55154 * 102.94303 * 97.22539 * 4 2 1 6 6 H 1.09008 * 111.03635 * 277.41090 * 5 4 2 7 7 N 1.46895 * 111.00487 * 153.57706 * 5 4 2 8 8 C 1.48531 * 111.00279 * 63.95423 * 7 5 4 9 9 C 1.54938 * 103.23175 * 159.72127 * 8 7 5 10 10 C 1.54600 * 102.91776 * 322.58590 * 9 8 7 11 11 C 1.47907 * 110.99818 * 181.34952 * 7 5 4 12 12 C 1.54908 * 101.58289 * 35.49976 * 5 4 2 13 13 N 1.47290 * 109.85675 * 238.85037 * 2 1 3 14 14 C 1.34774 * 125.79121 * 59.50355 * 13 2 1 15 15 O 1.21280 * 120.00501 * 0.02562 * 14 13 2 16 16 C 1.50698 * 119.99753 * 180.02562 * 14 13 2 17 17 C 1.52998 * 109.47102 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47360 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99814 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00280 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99928 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47178 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47280 * 120.00496 * 22 20 18 25 25 H 1.48505 * 109.47134 * 240.00082 * 22 20 18 26 26 H 1.09005 * 109.47227 * 298.98333 * 1 2 3 27 27 H 1.09002 * 109.47214 * 58.98361 * 1 2 3 28 28 H 1.09004 * 109.46879 * 178.98623 * 1 2 3 29 29 H 1.09002 * 110.72180 * 338.85775 * 4 2 1 30 30 H 1.08994 * 110.87038 * 215.65805 * 4 2 1 31 31 H 1.09002 * 110.66377 * 278.15289 * 8 7 5 32 32 H 1.08998 * 110.66919 * 41.28445 * 8 7 5 33 33 H 1.08994 * 110.72950 * 204.22567 * 9 8 7 34 34 H 1.08999 * 110.72106 * 80.94013 * 9 8 7 35 35 H 1.08996 * 110.30955 * 263.03724 * 10 9 8 36 36 H 1.08998 * 110.39127 * 140.91459 * 10 9 8 37 37 H 1.08996 * 109.91684 * 333.50250 * 11 7 5 38 38 H 1.09001 * 109.91735 * 94.60673 * 11 7 5 39 39 H 1.09002 * 110.36632 * 81.83114 * 12 5 4 40 40 H 1.08995 * 110.36781 * 204.04351 * 12 5 4 41 41 H 1.09001 * 109.47204 * 299.99785 * 16 14 13 42 42 H 1.09000 * 109.47543 * 59.99762 * 16 14 13 43 43 H 1.08999 * 109.47091 * 299.99451 * 17 16 14 44 44 H 1.09000 * 109.47745 * 59.99895 * 17 16 14 45 45 H 0.97001 * 120.00138 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 1.2438 5 6 2.3519 -2.1685 0.6955 6 1 1.4455 -2.7733 0.6643 7 7 3.3965 -2.8309 1.4878 8 6 2.9446 -3.0524 2.8853 9 6 3.8871 -4.1742 3.3891 10 6 4.0474 -5.0762 2.1438 11 6 3.7023 -4.1726 0.9455 12 6 2.8568 -1.8509 -0.7341 13 7 2.0303 -0.7166 -1.1856 14 6 1.7762 -0.3914 -2.4686 15 8 1.0797 0.5679 -2.7246 16 6 2.3576 -1.2198 -3.5852 17 6 1.9186 -0.6408 -4.9316 18 6 2.5005 -1.4688 -6.0482 19 1 3.1211 -2.3229 -5.8203 20 6 2.2398 -1.1367 -7.3608 21 7 1.4837 -0.0970 -7.6383 22 14 2.9605 -2.1635 -8.7449 23 1 3.7696 -3.2690 -8.1716 24 1 1.8604 -2.7290 -9.5663 25 1 3.8253 -1.3083 -9.5971 26 1 -0.3634 0.4980 0.8990 27 1 -0.3634 0.5295 -0.8807 28 1 -0.3633 -1.0276 -0.0182 29 1 1.2918 -0.7862 2.0212 30 1 2.9650 -0.2822 1.6215 31 1 3.0724 -2.1472 3.4789 32 1 1.9065 -3.3840 2.9060 33 1 3.4264 -4.7261 4.2084 34 1 4.8492 -3.7620 3.6933 35 1 3.3564 -5.9176 2.1946 36 1 5.0737 -5.4346 2.0641 37 1 2.8327 -4.5680 0.4207 38 1 4.5515 -4.1132 0.2647 39 1 3.9092 -1.5678 -0.7106 40 1 2.7106 -2.7106 -1.3879 41 1 3.4456 -1.2047 -3.5202 42 1 2.0027 -2.2467 -3.4986 43 1 0.8306 -0.6563 -4.9963 44 1 2.2732 0.3862 -5.0186 45 1 1.3006 0.1369 -8.5617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360596345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:45 Heat of formation + Delta-G solvation = -41.713064 kcal Electronic energy + Delta-G solvation = -22471.339867 eV Core-core repulsion = 19295.008416 eV Total energy + Delta-G solvation = -3176.331451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26463 -38.81844 -36.87448 -33.47453 -32.53185 -32.01174 -30.51429 -29.20254 -28.63791 -25.85186 -25.62724 -23.03909 -22.14488 -21.26870 -20.60928 -20.01331 -18.45664 -17.08800 -16.66330 -16.21830 -15.68412 -15.11329 -15.05769 -14.44015 -14.27696 -14.18149 -13.73442 -13.37766 -13.10348 -12.89329 -12.75412 -12.51824 -12.24678 -12.14669 -11.81561 -11.76080 -11.61554 -11.45797 -11.19360 -10.99609 -10.94219 -10.92918 -10.86897 -10.64730 -10.55469 -9.92709 -9.61363 -9.12001 -8.94828 -8.73353 -8.36925 -8.28743 -5.94139 -3.98337 3.18186 3.28054 3.33816 3.40860 3.44293 3.74468 4.16977 4.33785 4.48313 4.53605 4.61228 4.65161 4.89409 4.97684 5.13867 5.19977 5.23122 5.35932 5.37589 5.40814 5.48443 5.51625 5.52199 5.60042 5.65089 5.68388 5.71873 5.75627 5.80938 5.88417 5.93451 6.11706 6.24701 6.26881 6.39488 6.56846 6.66228 6.80650 6.93763 7.77037 7.89085 7.91783 8.09622 8.41063 8.80120 9.10354 9.65056 11.16888 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020128 B = 0.003741 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.754801 B = 7483.604200 C = 8716.758653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 H 0.073 0.927 4 C -0.117 4.117 5 C 0.061 3.939 6 H 0.059 0.941 7 N -0.507 5.507 8 C 0.036 3.964 9 C -0.124 4.124 10 C -0.131 4.131 11 C 0.032 3.968 12 C 0.114 3.886 13 N -0.626 5.626 14 C 0.528 3.472 15 O -0.530 6.530 16 C -0.124 4.124 17 C 0.037 3.963 18 C -0.525 4.525 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 -8.216 24.444 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.049 4.049 6 H 0.077 0.923 7 N -0.231 5.231 8 C -0.092 4.092 9 C -0.162 4.162 10 C -0.170 4.170 11 C -0.096 4.096 12 C -0.010 4.010 13 N -0.364 5.364 14 C 0.319 3.681 15 O -0.405 6.405 16 C -0.164 4.164 17 C -0.001 4.001 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.042 0.958 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.545 -7.215 24.005 25.315 hybrid contribution -0.370 -1.120 -0.789 1.420 sum 3.175 -8.336 23.216 24.871 Atomic orbital electron populations 1.22151 0.95008 1.02041 1.02841 1.21478 0.94556 0.96420 0.84453 0.90874 1.22734 1.01810 0.94282 0.96701 1.22979 0.92884 0.95426 0.93568 0.92329 1.64764 1.37883 1.18657 1.01825 1.23212 0.97156 0.98983 0.89834 1.22476 1.00209 0.96210 0.97275 1.22399 1.02228 0.97913 0.94416 1.22908 1.01231 0.88117 0.97339 1.22144 0.95696 0.89767 0.93392 1.48808 1.51950 1.30391 1.05229 1.21276 0.79915 0.85266 0.81646 1.90655 1.38152 1.28991 1.82724 1.21855 1.00766 0.98832 0.94977 1.18910 0.97351 0.96445 0.87347 1.21255 1.31153 1.12898 0.91049 0.92587 1.25028 0.95261 0.95236 0.98895 1.70013 1.37500 1.26421 1.18910 0.86540 0.78901 0.80265 0.82283 1.19745 1.21037 1.21010 0.92251 0.90704 0.92907 0.90463 0.89679 0.89895 0.93733 0.91153 0.90668 0.91585 0.90900 0.93473 0.89840 0.90504 0.90668 0.90345 0.90515 0.95853 0.95797 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.05 37.16 0.34 -1.81 16 2 C 0.13 1.79 3.51 -66.80 -0.23 1.56 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.12 -1.16 5.47 -24.90 -0.14 -1.29 16 5 C 0.06 0.62 2.36 -65.57 -0.16 0.47 16 6 H 0.06 0.62 8.06 -51.92 -0.42 0.20 16 7 N -0.51 -4.61 5.15 -219.94 -1.13 -5.75 16 8 C 0.04 0.27 5.95 -1.90 -0.01 0.25 16 9 C -0.12 -0.78 7.06 -24.87 -0.18 -0.96 16 10 C -0.13 -0.88 6.93 -25.37 -0.18 -1.06 16 11 C 0.03 0.27 6.15 -2.75 -0.02 0.25 16 12 C 0.11 1.42 5.78 -2.53 -0.01 1.41 16 13 N -0.63 -9.86 3.09 -162.82 -0.50 -10.37 16 14 C 0.53 10.80 7.64 -10.99 -0.08 10.71 16 15 O -0.53 -12.89 14.91 5.56 0.08 -12.80 16 16 C -0.12 -2.65 4.64 -27.89 -0.13 -2.78 16 17 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 18 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 22 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.24 6.78 -51.93 -0.35 0.89 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.64 7.83 -51.93 -0.41 0.24 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.04 0.33 8.02 -51.93 -0.42 -0.09 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.41 7.72 -51.93 -0.40 0.01 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.92 7.47 -51.93 -0.39 0.53 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.08 1.50 7.85 -51.93 -0.41 1.10 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -33.51 354.30 -10.07 -43.58 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -8.24 Total: -3.64 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.33 Total: -6.21 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.90 Total: -43.12 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.51 -10.07 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360596345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.862 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds