Wall clock time and date at job start Tue Mar 31 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.87443 * 2 1 4 4 C 1.54325 * 109.88128 * 121.01569 * 2 1 3 5 5 C 1.55154 * 102.94303 * 97.22539 * 4 2 1 6 6 H 1.09008 * 111.03635 * 277.41090 * 5 4 2 7 7 N 1.46895 * 111.00487 * 153.57706 * 5 4 2 8 8 C 1.48531 * 111.00279 * 63.95423 * 7 5 4 9 9 C 1.54938 * 103.23175 * 159.72127 * 8 7 5 10 10 C 1.54600 * 102.91776 * 322.58590 * 9 8 7 11 11 C 1.47907 * 110.99818 * 181.34952 * 7 5 4 12 12 C 1.54908 * 101.58289 * 35.49976 * 5 4 2 13 13 N 1.47290 * 109.85675 * 238.85037 * 2 1 3 14 14 C 1.34774 * 125.79121 * 59.50355 * 13 2 1 15 15 O 1.21280 * 120.00501 * 0.02562 * 14 13 2 16 16 C 1.50698 * 119.99753 * 180.02562 * 14 13 2 17 17 C 1.52998 * 109.47102 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47360 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99814 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00280 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99928 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47178 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47280 * 120.00496 * 22 20 18 25 25 H 1.48505 * 109.47134 * 240.00082 * 22 20 18 26 26 H 1.09005 * 109.47227 * 298.98333 * 1 2 3 27 27 H 1.09002 * 109.47214 * 58.98361 * 1 2 3 28 28 H 1.09004 * 109.46879 * 178.98623 * 1 2 3 29 29 H 1.09002 * 110.72180 * 338.85775 * 4 2 1 30 30 H 1.08994 * 110.87038 * 215.65805 * 4 2 1 31 31 H 1.09002 * 110.66377 * 278.15289 * 8 7 5 32 32 H 1.08998 * 110.66919 * 41.28445 * 8 7 5 33 33 H 1.08994 * 110.72950 * 204.22567 * 9 8 7 34 34 H 1.08999 * 110.72106 * 80.94013 * 9 8 7 35 35 H 1.08996 * 110.30955 * 263.03724 * 10 9 8 36 36 H 1.08998 * 110.39127 * 140.91459 * 10 9 8 37 37 H 1.08996 * 109.91684 * 333.50250 * 11 7 5 38 38 H 1.09001 * 109.91735 * 94.60673 * 11 7 5 39 39 H 1.09002 * 110.36632 * 81.83114 * 12 5 4 40 40 H 1.08995 * 110.36781 * 204.04351 * 12 5 4 41 41 H 1.09001 * 109.47204 * 299.99785 * 16 14 13 42 42 H 1.09000 * 109.47543 * 59.99762 * 16 14 13 43 43 H 1.08999 * 109.47091 * 299.99451 * 17 16 14 44 44 H 1.09000 * 109.47745 * 59.99895 * 17 16 14 45 45 H 0.97001 * 120.00138 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 1.2438 5 6 2.3519 -2.1685 0.6955 6 1 1.4455 -2.7733 0.6643 7 7 3.3965 -2.8309 1.4878 8 6 2.9446 -3.0524 2.8853 9 6 3.8871 -4.1742 3.3891 10 6 4.0474 -5.0762 2.1438 11 6 3.7023 -4.1726 0.9455 12 6 2.8568 -1.8509 -0.7341 13 7 2.0303 -0.7166 -1.1856 14 6 1.7762 -0.3914 -2.4686 15 8 1.0797 0.5679 -2.7246 16 6 2.3576 -1.2198 -3.5852 17 6 1.9186 -0.6408 -4.9316 18 6 2.5005 -1.4688 -6.0482 19 1 3.1211 -2.3229 -5.8203 20 6 2.2398 -1.1367 -7.3608 21 7 1.4837 -0.0970 -7.6383 22 14 2.9605 -2.1635 -8.7449 23 1 3.7696 -3.2690 -8.1716 24 1 1.8604 -2.7290 -9.5663 25 1 3.8253 -1.3083 -9.5971 26 1 -0.3634 0.4980 0.8990 27 1 -0.3634 0.5295 -0.8807 28 1 -0.3633 -1.0276 -0.0182 29 1 1.2918 -0.7862 2.0212 30 1 2.9650 -0.2822 1.6215 31 1 3.0724 -2.1472 3.4789 32 1 1.9065 -3.3840 2.9060 33 1 3.4264 -4.7261 4.2084 34 1 4.8492 -3.7620 3.6933 35 1 3.3564 -5.9176 2.1946 36 1 5.0737 -5.4346 2.0641 37 1 2.8327 -4.5680 0.4207 38 1 4.5515 -4.1132 0.2647 39 1 3.9092 -1.5678 -0.7106 40 1 2.7106 -2.7106 -1.3879 41 1 3.4456 -1.2047 -3.5202 42 1 2.0027 -2.2467 -3.4986 43 1 0.8306 -0.6563 -4.9963 44 1 2.2732 0.3862 -5.0186 45 1 1.3006 0.1369 -8.5617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360596345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:44 Heat of formation + Delta-G solvation = -63.869656 kcal Electronic energy + Delta-G solvation = -22472.300649 eV Core-core repulsion = 19295.008416 eV Total energy + Delta-G solvation = -3177.292233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41618 -39.86177 -38.06768 -35.60849 -33.63527 -33.29987 -32.26623 -29.80425 -29.50812 -27.74447 -26.75267 -24.48712 -23.29262 -22.24828 -21.45274 -21.03365 -19.83327 -18.82683 -17.80471 -17.50504 -16.83643 -16.50108 -16.37350 -16.22935 -15.42857 -15.01950 -14.70661 -14.55878 -14.43241 -14.17478 -13.98907 -13.65003 -13.44791 -13.29236 -13.16069 -13.04020 -12.84240 -12.68886 -12.45242 -12.15294 -12.02255 -12.00140 -11.94465 -11.83345 -11.63250 -11.56425 -11.35805 -11.29698 -10.67727 -10.59258 -9.69631 -9.40331 -8.19404 -6.33844 1.41147 1.42995 1.56339 1.66001 1.93344 2.42011 2.96049 3.13435 3.34570 3.53551 3.79519 3.93905 4.01263 4.04217 4.10541 4.19105 4.34944 4.36279 4.43149 4.43991 4.46370 4.59464 4.65754 4.69262 4.77012 4.84714 4.87746 4.95461 4.99623 5.04349 5.05877 5.06927 5.14777 5.24606 5.29946 5.37587 5.45404 5.52688 5.59321 5.82610 5.94431 6.07777 6.15480 6.48363 6.84287 7.23331 7.36495 8.93623 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020128 B = 0.003741 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.754801 B = 7483.604200 C = 8716.758653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 H 0.063 0.937 4 C -0.101 4.101 5 C 0.072 3.928 6 H 0.060 0.940 7 N -0.513 5.513 8 C 0.034 3.966 9 C -0.120 4.120 10 C -0.130 4.130 11 C 0.027 3.973 12 C 0.107 3.893 13 N -0.618 5.618 14 C 0.525 3.475 15 O -0.582 6.582 16 C -0.112 4.112 17 C 0.045 3.955 18 C -0.543 4.543 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.937 5.937 22 Si 0.976 3.024 23 H -0.252 1.252 24 H -0.279 1.279 25 H -0.280 1.280 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.098 0.902 43 H -0.018 1.018 44 H -0.018 1.018 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -10.631 26.427 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.081 0.919 4 C -0.139 4.139 5 C -0.038 4.038 6 H 0.077 0.923 7 N -0.238 5.238 8 C -0.094 4.094 9 C -0.158 4.158 10 C -0.168 4.168 11 C -0.100 4.100 12 C -0.016 4.016 13 N -0.353 5.353 14 C 0.316 3.684 15 O -0.462 6.462 16 C -0.152 4.152 17 C 0.007 3.993 18 C -0.580 4.580 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.799 3.201 23 H -0.176 1.176 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.001 0.999 44 H 0.000 1.000 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.968 -9.672 26.058 28.235 hybrid contribution -0.802 -0.350 -1.328 1.590 sum 4.165 -10.022 24.730 27.007 Atomic orbital electron populations 1.22090 0.94893 1.02045 1.02404 1.21746 0.94763 0.96387 0.84848 0.91898 1.22668 1.02741 0.93281 0.95188 1.22824 0.93107 0.95757 0.92082 0.92255 1.64766 1.37369 1.19113 1.02579 1.23301 0.97581 0.99794 0.88685 1.22479 1.00084 0.95847 0.97413 1.22399 1.02674 0.97843 0.93861 1.22958 1.00898 0.88152 0.98034 1.22388 0.95427 0.88551 0.95190 1.48690 1.51104 1.31076 1.04426 1.20998 0.79633 0.84591 0.83199 1.90637 1.40583 1.31110 1.83866 1.21592 1.01844 0.99469 0.92249 1.18674 0.94628 0.94692 0.91279 1.21712 1.31275 1.13405 0.91644 0.90702 1.26157 0.95480 0.96501 1.02320 1.70190 1.39146 1.28619 1.19797 0.85248 0.78161 0.78638 0.78038 1.17585 1.20501 1.20535 0.89114 0.94825 0.92466 0.87913 0.88894 0.89132 0.93376 0.89752 0.90721 0.90971 0.90467 0.93857 0.90314 0.90007 0.90292 0.88418 0.88402 0.99938 0.99976 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 9.05 71.98 0.65 -3.41 16 2 C 0.13 3.23 3.51 45.29 0.16 3.39 16 3 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.10 -1.70 5.47 31.78 0.17 -1.53 16 5 C 0.07 1.28 2.36 46.31 0.11 1.39 16 6 H 0.06 1.08 8.06 -2.38 -0.02 1.07 16 7 N -0.51 -7.91 5.15 -849.77 -4.37 -12.29 16 8 C 0.03 0.39 5.95 86.65 0.52 0.90 16 9 C -0.12 -1.15 7.06 31.80 0.22 -0.93 16 10 C -0.13 -1.40 6.93 31.48 0.22 -1.18 16 11 C 0.03 0.39 6.15 86.45 0.53 0.93 16 12 C 0.11 2.49 5.78 86.85 0.50 3.00 16 13 N -0.62 -19.30 3.09 -787.43 -2.43 -21.73 16 14 C 0.53 22.20 7.64 87.66 0.67 22.87 16 15 O -0.58 -30.16 14.91 -3.03 -0.05 -30.20 16 16 C -0.11 -4.84 4.64 29.85 0.14 -4.70 16 17 C 0.04 2.60 4.26 29.85 0.13 2.72 16 18 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 19 H 0.07 3.99 7.74 -2.91 -0.02 3.97 16 20 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 21 N -0.94 -60.48 13.29 21.45 0.28 -60.19 16 22 Si 0.98 44.95 29.54 68.60 2.03 46.98 16 23 H -0.25 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.03 1.15 6.78 -2.39 -0.02 1.14 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.28 7.83 -2.39 -0.02 1.26 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 0.92 8.10 -2.39 -0.02 0.90 16 32 H 0.05 0.54 8.02 -2.39 -0.02 0.52 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.04 0.66 7.72 -2.39 -0.02 0.64 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.08 1.79 7.47 -2.39 -0.02 1.78 16 41 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 42 H 0.10 3.79 7.85 -2.39 -0.02 3.77 16 43 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 44 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 45 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -76.68 354.30 1.10 -75.58 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.93 Total: 9.81 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 4.72 Total: -7.96 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -6.52 Total: -94.21 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.05 Total: -30.20 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -76.68 1.10 -75.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360596345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.710 kcal (2) G-P(sol) polarization free energy of solvation -76.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds