Wall clock time and date at job start Tue Mar 31 2020 02:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.00149 * 2 1 4 4 C 1.54315 * 109.98637 * 238.96829 * 2 1 3 5 5 H 1.09005 * 111.07700 * 144.56389 * 4 2 1 6 6 N 1.46902 * 110.59121 * 21.30721 * 4 2 1 7 7 C 1.48529 * 110.99716 * 74.13746 * 6 4 2 8 8 C 1.54934 * 103.22760 * 159.72367 * 7 6 4 9 9 C 1.54597 * 102.92160 * 322.58470 * 8 7 6 10 10 C 1.47904 * 111.00087 * 191.53301 * 6 4 2 11 11 C 1.55159 * 102.86578 * 263.04680 * 4 2 1 12 12 C 1.54906 * 101.58251 * 324.30430 * 11 4 2 13 13 N 1.47027 * 109.88420 * 121.09521 * 2 1 3 14 14 C 1.34782 * 125.64454 * 300.51064 * 13 2 1 15 15 O 1.21278 * 119.99880 * 359.72272 * 14 13 2 16 16 C 1.50702 * 119.99864 * 179.71509 * 14 13 2 17 17 C 1.52995 * 109.47194 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47143 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99813 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99693 * 179.72306 * 18 17 16 21 21 N 1.31517 * 120.00239 * 0.27381 * 20 18 17 22 22 Si 1.86795 * 119.99724 * 180.27094 * 20 18 17 23 23 H 1.48499 * 109.47023 * 89.99763 * 22 20 18 24 24 H 1.48500 * 109.47125 * 210.00178 * 22 20 18 25 25 H 1.48498 * 109.47113 * 330.00140 * 22 20 18 26 26 H 1.09004 * 109.46992 * 292.05015 * 1 2 3 27 27 H 1.08998 * 109.47096 * 52.05220 * 1 2 3 28 28 H 1.09004 * 109.46876 * 172.05564 * 1 2 3 29 29 H 1.09003 * 110.67113 * 278.15850 * 7 6 4 30 30 H 1.09005 * 110.66849 * 41.28494 * 7 6 4 31 31 H 1.09003 * 110.72852 * 204.23131 * 8 7 6 32 32 H 1.09003 * 110.72495 * 80.94355 * 8 7 6 33 33 H 1.08995 * 110.30873 * 263.04493 * 9 8 7 34 34 H 1.09002 * 110.39683 * 140.91542 * 9 8 7 35 35 H 1.08996 * 109.91421 * 333.50856 * 10 6 4 36 36 H 1.08999 * 109.91227 * 94.60917 * 10 6 4 37 37 H 1.08996 * 111.00619 * 206.22938 * 11 4 2 38 38 H 1.09006 * 111.00303 * 82.37308 * 11 4 2 39 39 H 1.08996 * 110.36748 * 278.16869 * 12 11 4 40 40 H 1.09002 * 110.36926 * 155.84478 * 12 11 4 41 41 H 1.08996 * 109.47058 * 60.00038 * 16 14 13 42 42 H 1.09003 * 109.47179 * 300.00292 * 16 14 13 43 43 H 1.08996 * 109.47443 * 59.99838 * 17 16 14 44 44 H 1.09003 * 109.46941 * 300.00002 * 17 16 14 45 45 H 0.96992 * 120.00228 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0574 -0.7476 -1.2427 5 1 2.9702 -0.2862 -1.6196 6 7 1.0300 -0.7955 -2.2915 7 6 0.8753 0.5289 -2.9458 8 6 0.1995 0.1807 -4.2958 9 6 0.8780 -1.1519 -4.6884 10 6 1.4145 -1.7344 -3.3677 11 6 2.3476 -2.1693 -0.6932 12 6 2.8523 -1.8531 0.7368 13 7 2.0301 -0.7141 1.1839 14 6 1.7743 -0.3852 2.4658 15 8 1.0808 0.5773 2.7180 16 6 2.3499 -1.2135 3.5854 17 6 1.9100 -0.6300 4.9296 18 6 2.4861 -1.4580 6.0493 19 1 3.1038 -2.3149 5.8246 20 6 2.2288 -1.1184 7.3607 21 7 1.4762 -0.0751 7.6343 22 14 2.9491 -2.1402 8.7486 23 1 4.2769 -1.5939 9.1278 24 1 2.0403 -2.0918 9.9220 25 1 3.1028 -3.5472 8.2992 26 1 -0.3633 0.3858 0.9525 27 1 -0.3633 0.6319 -0.8104 28 1 -0.3633 -1.0179 -0.1420 29 1 0.2339 1.1794 -2.3511 30 1 1.8479 0.9926 -3.1107 31 1 0.4036 0.9510 -5.0395 32 1 -0.8740 0.0433 -4.1657 33 1 1.6986 -0.9687 -5.3820 34 1 0.1513 -1.8313 -5.1340 35 1 2.5000 -1.8215 -3.4141 36 1 0.9711 -2.7128 -3.1827 37 1 3.1212 -2.6646 -1.2799 38 1 1.4382 -2.7695 -0.6626 39 1 3.9059 -1.5747 0.7143 40 1 2.6998 -2.7112 1.3914 41 1 3.4380 -1.2028 3.5229 42 1 1.9911 -2.2392 3.5001 43 1 0.8219 -0.6410 4.9919 44 1 2.2685 0.3958 5.0152 45 1 1.2955 0.1640 8.5567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360599833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:47 Heat of formation + Delta-G solvation = -34.164381 kcal Electronic energy + Delta-G solvation = -22573.327255 eV Core-core repulsion = 19397.323140 eV Total energy + Delta-G solvation = -3176.004115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39624 -38.77917 -36.76806 -33.45993 -32.67055 -31.44059 -30.79254 -29.17714 -28.93038 -25.69034 -25.36394 -23.07947 -22.15050 -21.48180 -20.70786 -19.63072 -18.44030 -17.05997 -16.63986 -16.19707 -15.85913 -15.30224 -14.95813 -14.40862 -14.31713 -14.20560 -13.75340 -13.30944 -13.01489 -12.84474 -12.48362 -12.31584 -12.23187 -12.16359 -11.84496 -11.77502 -11.63026 -11.25729 -11.14540 -11.06836 -10.92613 -10.90475 -10.81362 -10.56598 -10.51782 -9.90613 -9.59669 -9.11010 -8.91687 -8.66809 -8.33970 -8.26775 -5.93051 -3.97305 3.23018 3.30831 3.35219 3.41211 3.44013 3.76593 4.17720 4.34502 4.48768 4.51275 4.58147 4.66032 4.93624 4.96634 5.11170 5.20204 5.30588 5.31104 5.41731 5.42704 5.47269 5.51725 5.55085 5.62061 5.64817 5.67649 5.72295 5.77507 5.87305 5.99154 6.05423 6.25178 6.28648 6.33496 6.54745 6.63023 6.77394 6.83117 6.96428 7.77901 7.90694 7.94827 8.11062 8.42244 8.83404 9.11376 9.65923 11.17975 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.045931 B = 0.003131 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.465582 B = 8941.958523 C = 9365.830600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.146 3.854 3 H 0.065 0.935 4 C 0.065 3.935 5 H 0.057 0.943 6 N -0.501 5.501 7 C 0.029 3.971 8 C -0.123 4.123 9 C -0.131 4.131 10 C 0.037 3.963 11 C -0.125 4.125 12 C 0.103 3.897 13 N -0.626 5.626 14 C 0.527 3.473 15 O -0.530 6.530 16 C -0.124 4.124 17 C 0.037 3.963 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -3.601 -26.373 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.044 4.044 5 H 0.075 0.925 6 N -0.226 5.226 7 C -0.099 4.099 8 C -0.161 4.161 9 C -0.170 4.170 10 C -0.091 4.091 11 C -0.164 4.164 12 C -0.021 4.021 13 N -0.364 5.364 14 C 0.318 3.682 15 O -0.405 6.405 16 C -0.164 4.164 17 C 0.000 4.000 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.577 -3.110 -25.711 25.905 hybrid contribution 1.313 -0.318 0.363 1.399 sum 1.890 -3.428 -25.348 25.649 Atomic orbital electron populations 1.21946 0.93848 1.02450 1.02008 1.21311 0.95787 0.95021 0.83736 0.91733 1.22877 0.92626 0.96802 0.92088 0.92514 1.64804 1.42004 1.06437 1.09324 1.23383 0.99799 0.91801 0.94901 1.22472 1.00672 0.96750 0.96227 1.22396 1.00278 0.97345 0.96932 1.22822 0.98649 0.97395 0.90190 1.22881 1.02128 0.95972 0.95387 1.22220 0.94911 0.90031 0.94909 1.48769 1.52048 1.30386 1.05155 1.21274 0.79885 0.85307 0.81686 1.90654 1.38139 1.28830 1.82897 1.21848 1.00695 0.98949 0.94912 1.18903 0.97401 0.96355 0.87371 1.21221 1.31484 1.12660 0.91061 0.92644 1.25027 0.95259 0.95229 0.98891 1.69998 1.37526 1.26204 1.19124 0.86593 0.78911 0.80579 0.81876 1.20699 1.21227 1.19893 0.91738 0.92091 0.92207 0.89342 0.93754 0.91165 0.90629 0.91692 0.91026 0.93802 0.90234 0.90336 0.89540 0.91615 0.90012 0.90454 0.90390 0.95807 0.95859 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.31 37.16 0.31 -1.78 16 2 C 0.15 2.01 3.20 -66.96 -0.21 1.80 16 3 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.07 0.67 2.25 -65.88 -0.15 0.53 16 5 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 6 N -0.50 -4.70 3.90 -220.32 -0.86 -5.55 16 7 C 0.03 0.24 5.86 -1.90 -0.01 0.23 16 8 C -0.12 -0.84 7.06 -24.87 -0.18 -1.02 16 9 C -0.13 -0.84 6.93 -25.37 -0.18 -1.01 16 10 C 0.04 0.28 5.80 -2.75 -0.02 0.26 16 11 C -0.13 -1.18 5.66 -24.58 -0.14 -1.32 16 12 C 0.10 1.20 6.69 -2.53 -0.02 1.19 16 13 N -0.63 -9.88 3.08 -163.02 -0.50 -10.38 16 14 C 0.53 10.84 7.62 -10.98 -0.08 10.76 16 15 O -0.53 -13.02 14.79 5.56 0.08 -12.94 16 16 C -0.12 -2.64 4.64 -27.88 -0.13 -2.77 16 17 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 18 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.82 13.29 55.43 0.74 -27.09 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.06 1.15 6.52 -51.93 -0.34 0.82 16 27 H 0.06 0.76 5.51 -51.93 -0.29 0.48 16 28 H 0.06 0.87 8.03 -51.93 -0.42 0.45 16 29 H 0.09 0.80 6.11 -51.93 -0.32 0.48 16 30 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.31 7.63 -51.93 -0.40 -0.08 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.93 7.48 -51.93 -0.39 0.54 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.53 7.85 -51.93 -0.41 1.12 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -33.80 347.31 -9.64 -43.44 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.98 Total: -3.50 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.33 Total: -6.11 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.62 Total: -43.02 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.80 -9.64 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360599833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.273 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds