Wall clock time and date at job start Tue Mar 31 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.00149 * 2 1 4 4 C 1.54315 * 109.98637 * 238.96829 * 2 1 3 5 5 H 1.09005 * 111.07700 * 144.56389 * 4 2 1 6 6 N 1.46902 * 110.59121 * 21.30721 * 4 2 1 7 7 C 1.48529 * 110.99716 * 74.13746 * 6 4 2 8 8 C 1.54934 * 103.22760 * 159.72367 * 7 6 4 9 9 C 1.54597 * 102.92160 * 322.58470 * 8 7 6 10 10 C 1.47904 * 111.00087 * 191.53301 * 6 4 2 11 11 C 1.55159 * 102.86578 * 263.04680 * 4 2 1 12 12 C 1.54906 * 101.58251 * 324.30430 * 11 4 2 13 13 N 1.47027 * 109.88420 * 121.09521 * 2 1 3 14 14 C 1.34782 * 125.64454 * 300.51064 * 13 2 1 15 15 O 1.21278 * 119.99880 * 359.72272 * 14 13 2 16 16 C 1.50702 * 119.99864 * 179.71509 * 14 13 2 17 17 C 1.52995 * 109.47194 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47143 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99813 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99693 * 179.72306 * 18 17 16 21 21 N 1.31517 * 120.00239 * 0.27381 * 20 18 17 22 22 Si 1.86795 * 119.99724 * 180.27094 * 20 18 17 23 23 H 1.48499 * 109.47023 * 89.99763 * 22 20 18 24 24 H 1.48500 * 109.47125 * 210.00178 * 22 20 18 25 25 H 1.48498 * 109.47113 * 330.00140 * 22 20 18 26 26 H 1.09004 * 109.46992 * 292.05015 * 1 2 3 27 27 H 1.08998 * 109.47096 * 52.05220 * 1 2 3 28 28 H 1.09004 * 109.46876 * 172.05564 * 1 2 3 29 29 H 1.09003 * 110.67113 * 278.15850 * 7 6 4 30 30 H 1.09005 * 110.66849 * 41.28494 * 7 6 4 31 31 H 1.09003 * 110.72852 * 204.23131 * 8 7 6 32 32 H 1.09003 * 110.72495 * 80.94355 * 8 7 6 33 33 H 1.08995 * 110.30873 * 263.04493 * 9 8 7 34 34 H 1.09002 * 110.39683 * 140.91542 * 9 8 7 35 35 H 1.08996 * 109.91421 * 333.50856 * 10 6 4 36 36 H 1.08999 * 109.91227 * 94.60917 * 10 6 4 37 37 H 1.08996 * 111.00619 * 206.22938 * 11 4 2 38 38 H 1.09006 * 111.00303 * 82.37308 * 11 4 2 39 39 H 1.08996 * 110.36748 * 278.16869 * 12 11 4 40 40 H 1.09002 * 110.36926 * 155.84478 * 12 11 4 41 41 H 1.08996 * 109.47058 * 60.00038 * 16 14 13 42 42 H 1.09003 * 109.47179 * 300.00292 * 16 14 13 43 43 H 1.08996 * 109.47443 * 59.99838 * 17 16 14 44 44 H 1.09003 * 109.46941 * 300.00002 * 17 16 14 45 45 H 0.96992 * 120.00228 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0574 -0.7476 -1.2427 5 1 2.9702 -0.2862 -1.6196 6 7 1.0300 -0.7955 -2.2915 7 6 0.8753 0.5289 -2.9458 8 6 0.1995 0.1807 -4.2958 9 6 0.8780 -1.1519 -4.6884 10 6 1.4145 -1.7344 -3.3677 11 6 2.3476 -2.1693 -0.6932 12 6 2.8523 -1.8531 0.7368 13 7 2.0301 -0.7141 1.1839 14 6 1.7743 -0.3852 2.4658 15 8 1.0808 0.5773 2.7180 16 6 2.3499 -1.2135 3.5854 17 6 1.9100 -0.6300 4.9296 18 6 2.4861 -1.4580 6.0493 19 1 3.1038 -2.3149 5.8246 20 6 2.2288 -1.1184 7.3607 21 7 1.4762 -0.0751 7.6343 22 14 2.9491 -2.1402 8.7486 23 1 4.2769 -1.5939 9.1278 24 1 2.0403 -2.0918 9.9220 25 1 3.1028 -3.5472 8.2992 26 1 -0.3633 0.3858 0.9525 27 1 -0.3633 0.6319 -0.8104 28 1 -0.3633 -1.0179 -0.1420 29 1 0.2339 1.1794 -2.3511 30 1 1.8479 0.9926 -3.1107 31 1 0.4036 0.9510 -5.0395 32 1 -0.8740 0.0433 -4.1657 33 1 1.6986 -0.9687 -5.3820 34 1 0.1513 -1.8313 -5.1340 35 1 2.5000 -1.8215 -3.4141 36 1 0.9711 -2.7128 -3.1827 37 1 3.1212 -2.6646 -1.2799 38 1 1.4382 -2.7695 -0.6626 39 1 3.9059 -1.5747 0.7143 40 1 2.6998 -2.7112 1.3914 41 1 3.4380 -1.2028 3.5229 42 1 1.9911 -2.2392 3.5001 43 1 0.8219 -0.6410 4.9919 44 1 2.2685 0.3958 5.0152 45 1 1.2955 0.1640 8.5567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360599833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:46 Heat of formation + Delta-G solvation = -56.191521 kcal Electronic energy + Delta-G solvation = -22574.282423 eV Core-core repulsion = 19397.323140 eV Total energy + Delta-G solvation = -3176.959284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49823 -39.91294 -37.92629 -35.59470 -33.81971 -32.85418 -32.24188 -30.24193 -29.56886 -27.64739 -26.39311 -24.51126 -23.26317 -22.53463 -21.61981 -20.55507 -19.82715 -18.81814 -17.76915 -17.44287 -16.98301 -16.57568 -16.43623 -16.17971 -15.60154 -14.91567 -14.75525 -14.62986 -14.22941 -14.12257 -13.73150 -13.67979 -13.31697 -13.29401 -13.14381 -12.91630 -12.80318 -12.77310 -12.46664 -12.19633 -12.02247 -11.96241 -11.85392 -11.78928 -11.60483 -11.52490 -11.35906 -11.30494 -10.63308 -10.57435 -9.64531 -9.34611 -8.18342 -6.32913 1.41656 1.45004 1.55950 1.69833 1.97597 2.43060 3.00589 3.14412 3.32326 3.60382 3.77722 3.89976 4.03457 4.05764 4.16730 4.27264 4.35281 4.40037 4.45944 4.47651 4.49104 4.56747 4.66823 4.70755 4.77244 4.80351 4.93901 4.99827 5.02573 5.03546 5.09354 5.14820 5.17944 5.26369 5.33301 5.43280 5.47211 5.56281 5.61048 5.83976 5.97389 6.10361 6.16478 6.53588 6.85530 7.27163 7.37480 8.94606 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.045931 B = 0.003131 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.465582 B = 8941.958523 C = 9365.830600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.138 3.862 3 H 0.050 0.950 4 C 0.078 3.922 5 H 0.070 0.930 6 N -0.515 5.515 7 C 0.025 3.975 8 C -0.120 4.120 9 C -0.128 4.128 10 C 0.037 3.963 11 C -0.113 4.113 12 C 0.091 3.909 13 N -0.619 5.619 14 C 0.523 3.477 15 O -0.587 6.587 16 C -0.110 4.110 17 C 0.044 3.956 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.976 3.024 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.254 1.254 26 H 0.021 0.979 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.100 0.900 43 H -0.020 1.020 44 H -0.019 1.019 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -6.269 -28.386 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.035 3.965 3 H 0.068 0.932 4 C -0.032 4.032 5 H 0.088 0.912 6 N -0.240 5.240 7 C -0.102 4.102 8 C -0.158 4.158 9 C -0.166 4.166 10 C -0.091 4.091 11 C -0.150 4.150 12 C -0.031 4.031 13 N -0.353 5.353 14 C 0.314 3.686 15 O -0.466 6.466 16 C -0.150 4.150 17 C 0.007 3.993 18 C -0.580 4.580 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.800 3.200 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.178 1.178 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.118 0.882 43 H -0.001 1.001 44 H -0.001 1.001 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.694 -5.826 -27.797 28.528 hybrid contribution 0.627 0.559 0.903 1.233 sum 3.322 -5.267 -26.894 27.606 Atomic orbital electron populations 1.21807 0.94596 1.02404 1.00214 1.21485 0.95237 0.94999 0.84824 0.93174 1.22741 0.92987 0.96816 0.90620 0.91234 1.64756 1.41923 1.07279 1.10054 1.23398 0.99937 0.91363 0.95532 1.22459 1.00207 0.97607 0.95570 1.22396 1.00729 0.96857 0.96605 1.22881 0.99412 0.96900 0.89870 1.22868 1.02944 0.95300 0.93933 1.22631 0.95363 0.88603 0.96466 1.48679 1.51288 1.31288 1.04090 1.21073 0.79577 0.84634 0.83332 1.90634 1.40743 1.31161 1.84108 1.21585 1.02007 0.99493 0.91905 1.18675 0.94549 0.94644 0.91464 1.21698 1.31541 1.13197 0.91600 0.90531 1.26175 0.95481 0.96486 1.02406 1.70187 1.39266 1.28475 1.19948 0.85287 0.77987 0.79319 0.77445 1.19620 1.21159 1.17779 0.96009 0.90418 0.92155 0.90733 0.93332 0.89944 0.91240 0.90546 0.90428 0.92709 0.90023 0.86844 0.90011 0.89541 0.89265 0.88085 0.88163 1.00129 1.00098 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.31 71.98 0.60 -3.35 16 2 C 0.14 3.80 3.20 45.34 0.14 3.95 16 3 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 4 C 0.08 1.41 2.25 46.10 0.10 1.52 16 5 H 0.07 1.13 7.93 -2.38 -0.02 1.11 16 6 N -0.52 -8.51 3.90 -850.95 -3.31 -11.83 16 7 C 0.03 0.38 5.86 86.65 0.51 0.89 16 8 C -0.12 -1.40 7.06 31.80 0.22 -1.17 16 9 C -0.13 -1.24 6.93 31.47 0.22 -1.02 16 10 C 0.04 0.43 5.80 86.45 0.50 0.93 16 11 C -0.11 -1.71 5.66 31.99 0.18 -1.53 16 12 C 0.09 1.87 6.69 86.85 0.58 2.45 16 13 N -0.62 -19.28 3.08 -788.06 -2.43 -21.71 16 14 C 0.52 22.22 7.62 87.66 0.67 22.89 16 15 O -0.59 -30.94 14.79 -3.02 -0.04 -30.99 16 16 C -0.11 -4.72 4.64 29.85 0.14 -4.58 16 17 C 0.04 2.57 4.26 29.85 0.13 2.69 16 18 C -0.54 -31.61 9.11 25.60 0.23 -31.37 16 19 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 20 C -0.01 -0.49 5.46 84.66 0.46 -0.02 16 21 N -0.94 -60.81 13.29 21.45 0.28 -60.53 16 22 Si 0.98 44.92 29.54 68.60 2.03 46.94 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 25 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 26 H 0.02 0.82 6.52 -2.38 -0.02 0.80 16 27 H 0.08 2.01 5.51 -2.39 -0.01 1.99 16 28 H 0.06 1.76 8.03 -2.38 -0.02 1.74 16 29 H 0.07 1.32 6.11 -2.39 -0.01 1.31 16 30 H 0.05 0.70 7.87 -2.38 -0.02 0.69 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.05 0.54 7.63 -2.39 -0.02 0.52 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 1.03 8.08 -2.39 -0.02 1.01 16 38 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.74 7.48 -2.39 -0.02 1.72 16 41 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 42 H 0.10 3.81 7.85 -2.39 -0.02 3.80 16 43 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 44 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 45 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -78.51 347.31 2.15 -76.36 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.94 Total: 9.48 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 4.69 Total: -7.73 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -5.46 Total: -94.06 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.04 Total: -30.99 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -78.51 2.15 -76.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360599833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.165 kcal (2) G-P(sol) polarization free energy of solvation -78.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds