Wall clock time and date at job start Tue Mar 31 2020 02:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.90498 * 2 1 4 4 C 1.54007 * 110.07211 * 238.80092 * 2 1 3 5 5 H 1.08991 * 110.32766 * 0.75214 * 4 2 1 6 6 N 1.46902 * 110.32022 * 122.86220 * 4 2 1 7 7 C 1.48534 * 110.99721 * 176.47290 * 6 4 2 8 8 C 1.54938 * 103.22724 * 159.72065 * 7 6 4 9 9 C 1.54597 * 102.92230 * 322.58873 * 8 7 6 10 10 C 1.47895 * 111.00408 * 293.86659 * 6 4 2 11 11 C 1.54614 * 105.04381 * 241.85249 * 4 2 1 12 12 C 1.54597 * 102.91299 * 21.70543 * 11 4 2 13 13 N 1.47490 * 109.91158 * 121.09191 * 2 1 3 14 14 C 1.34775 * 127.03330 * 274.07220 * 13 2 1 15 15 O 1.21283 * 119.99992 * 359.97438 * 14 13 2 16 16 C 1.50697 * 119.99842 * 180.02562 * 14 13 2 17 17 C 1.53006 * 109.46866 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.46879 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00433 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00016 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00175 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47336 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47300 * 300.00115 * 22 20 18 25 25 H 1.48508 * 109.47405 * 60.00298 * 22 20 18 26 26 H 1.08996 * 109.47076 * 300.36333 * 1 2 3 27 27 H 1.09000 * 109.46687 * 60.36610 * 1 2 3 28 28 H 1.09007 * 109.46979 * 180.36190 * 1 2 3 29 29 H 1.09001 * 110.66808 * 278.15891 * 7 6 4 30 30 H 1.09000 * 110.66559 * 41.28337 * 7 6 4 31 31 H 1.09003 * 110.72320 * 204.22557 * 8 7 6 32 32 H 1.09004 * 110.87488 * 81.02101 * 8 7 6 33 33 H 1.09005 * 110.30606 * 263.04096 * 9 8 7 34 34 H 1.09000 * 110.30659 * 140.87256 * 9 8 7 35 35 H 1.09004 * 109.92045 * 333.51575 * 10 6 4 36 36 H 1.09001 * 109.91426 * 94.60846 * 10 6 4 37 37 H 1.08999 * 110.73499 * 140.19051 * 11 4 2 38 38 H 1.08998 * 110.74651 * 263.51287 * 11 4 2 39 39 H 1.08999 * 110.61792 * 204.34899 * 12 11 4 40 40 H 1.08998 * 110.54402 * 81.34399 * 12 11 4 41 41 H 1.08994 * 109.47229 * 59.99926 * 16 14 13 42 42 H 1.08999 * 109.47137 * 299.99404 * 16 14 13 43 43 H 1.09002 * 109.46809 * 60.00419 * 17 16 14 44 44 H 1.08991 * 109.47245 * 300.00107 * 17 16 14 45 45 H 0.96999 * 119.99993 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0586 -0.7493 -1.2373 5 1 1.2287 -1.1037 -1.8485 6 7 2.9358 0.1252 -2.0271 7 6 3.5214 -0.6081 -3.1785 8 6 3.9450 0.5275 -4.1437 9 6 2.8082 1.5624 -3.9799 10 6 2.1752 1.2512 -2.6110 11 6 2.8579 -1.9455 -0.6710 12 6 2.2720 -2.1108 0.7501 13 7 2.0323 -0.7161 1.1875 14 6 2.2370 -0.2047 2.4175 15 8 2.0017 0.9651 2.6347 16 6 2.7592 -1.0861 3.5227 17 6 2.9008 -0.2650 4.8060 18 6 3.4224 -1.1465 5.9113 19 1 3.6324 -2.1881 5.7179 20 6 3.6317 -0.6234 7.1697 21 7 3.3755 0.6449 7.4056 22 14 4.2789 -1.7159 8.5397 23 1 4.4163 -0.9190 9.7853 24 1 3.3309 -2.8355 8.7697 25 1 5.6049 -2.2615 8.1531 26 1 -0.3633 0.5194 0.8867 27 1 -0.3633 0.5081 -0.8933 28 1 -0.3633 -1.0277 0.0065 29 1 4.3884 -1.1890 -2.8639 30 1 2.7750 -1.2510 -3.6450 31 1 3.9909 0.1641 -5.1703 32 1 4.9019 0.9550 -3.8442 33 1 2.0707 1.4430 -4.7737 34 1 3.2136 2.5742 -3.9881 35 1 1.1311 0.9664 -2.7409 36 1 2.2440 2.1228 -1.9601 37 1 2.6864 -2.8414 -1.2676 38 1 3.9212 -1.7109 -0.6220 39 1 2.9902 -2.6018 1.4067 40 1 1.3365 -2.6692 0.7156 41 1 3.7323 -1.4866 3.2389 42 1 2.0632 -1.9078 3.6917 43 1 1.9278 0.1358 5.0900 44 1 3.5968 0.5565 4.6368 45 1 3.5231 1.0131 8.2908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360599834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:49 Heat of formation + Delta-G solvation = -38.871251 kcal Electronic energy + Delta-G solvation = -22554.351728 eV Core-core repulsion = 19378.143508 eV Total energy + Delta-G solvation = -3176.208221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.31700 -38.69870 -36.83466 -33.43472 -32.54122 -31.51602 -30.74908 -29.39910 -28.96404 -25.72418 -25.37140 -23.00887 -22.06907 -21.23943 -20.77376 -19.96968 -18.37134 -17.13432 -16.65469 -16.11195 -15.65289 -15.59421 -14.69304 -14.38309 -14.18575 -14.05164 -13.61150 -13.53172 -13.11626 -12.76887 -12.66125 -12.54864 -12.31561 -12.15732 -11.87262 -11.61315 -11.48970 -11.39122 -11.27728 -11.10933 -10.94641 -10.87447 -10.85345 -10.61827 -10.57559 -9.89922 -9.59313 -9.12842 -8.94847 -8.63000 -8.37553 -8.26656 -5.92063 -3.96425 3.27144 3.31951 3.36992 3.41552 3.43529 3.72411 4.23812 4.37489 4.49318 4.51587 4.64437 4.70593 4.98892 5.01121 5.13415 5.21873 5.29930 5.35236 5.36641 5.41580 5.42546 5.50561 5.52697 5.55207 5.59103 5.66242 5.72071 5.75152 5.83013 5.92761 6.01721 6.09408 6.19049 6.28215 6.29998 6.61804 6.67869 6.89045 6.96831 7.78421 7.91611 7.98487 8.12060 8.42995 8.84090 9.12032 9.66664 11.18917 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.003283 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.668442 B = 8526.464483 C = 8636.525660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.089 0.911 4 C 0.068 3.932 5 H 0.057 0.943 6 N -0.508 5.508 7 C 0.036 3.964 8 C -0.124 4.124 9 C -0.131 4.131 10 C 0.033 3.967 11 C -0.128 4.128 12 C 0.103 3.897 13 N -0.624 5.624 14 C 0.531 3.469 15 O -0.533 6.533 16 C -0.123 4.123 17 C 0.037 3.963 18 C -0.527 4.527 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.287 1.287 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 -5.079 -25.384 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.107 0.893 4 C -0.041 4.041 5 H 0.074 0.926 6 N -0.233 5.233 7 C -0.092 4.092 8 C -0.162 4.162 9 C -0.169 4.169 10 C -0.095 4.095 11 C -0.166 4.166 12 C -0.021 4.021 13 N -0.361 5.361 14 C 0.322 3.678 15 O -0.408 6.408 16 C -0.163 4.163 17 C 0.000 4.000 18 C -0.565 4.565 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.213 1.213 24 H -0.203 1.203 25 H -0.202 1.202 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.042 0.958 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.520 -4.052 -24.619 25.077 hybrid contribution -0.380 -0.921 0.195 1.015 sum -2.899 -4.973 -24.424 25.093 Atomic orbital electron populations 1.22159 0.95312 1.01940 1.02283 1.21420 0.93234 0.97892 0.84142 0.89293 1.22800 0.94052 0.93031 0.94254 0.92563 1.64852 1.30668 1.08295 1.19478 1.23206 0.99300 0.96038 0.90619 1.22476 0.99127 0.95746 0.98845 1.22395 0.97893 1.00080 0.96524 1.22889 0.95868 0.95474 0.95242 1.22747 1.01263 0.96739 0.95878 1.22366 1.00385 0.84456 0.94906 1.49035 1.67002 1.10666 1.09397 1.21277 0.76296 0.88805 0.81386 1.90669 1.51108 1.17711 1.81274 1.21841 1.00544 0.98999 0.94949 1.18901 0.98212 0.94644 0.88251 1.21182 1.44233 0.96133 0.94941 0.92683 1.25027 0.95678 0.94987 0.98698 1.69995 1.48340 1.12484 1.22035 0.86652 0.79410 0.80449 0.81401 1.21301 1.20273 1.20249 0.91645 0.92295 0.92543 0.89884 0.93854 0.91194 0.90631 0.91646 0.90933 0.93692 0.90088 0.90486 0.89597 0.89483 0.91416 0.90354 0.90422 0.95865 0.95808 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.32 37.16 0.35 -1.59 16 2 C 0.14 1.89 2.72 -66.86 -0.18 1.71 16 3 H 0.09 1.45 7.16 -51.93 -0.37 1.08 16 4 C 0.07 0.72 2.05 -66.34 -0.14 0.58 16 5 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 6 N -0.51 -5.38 5.01 -220.87 -1.11 -6.49 16 7 C 0.04 0.30 5.82 -1.90 -0.01 0.29 16 8 C -0.12 -0.91 7.06 -24.87 -0.18 -1.08 16 9 C -0.13 -0.99 6.93 -25.38 -0.18 -1.16 16 10 C 0.03 0.31 5.85 -2.76 -0.02 0.30 16 11 C -0.13 -1.24 5.89 -25.04 -0.15 -1.39 16 12 C 0.10 1.19 6.92 -2.31 -0.02 1.18 16 13 N -0.62 -9.93 2.92 -162.49 -0.47 -10.40 16 14 C 0.53 11.07 7.89 -10.99 -0.09 10.98 16 15 O -0.53 -13.37 16.32 5.56 0.09 -13.28 16 16 C -0.12 -2.64 4.57 -27.88 -0.13 -2.77 16 17 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 18 C -0.53 -15.24 9.11 -34.44 -0.31 -15.55 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 21 N -0.89 -27.90 13.29 55.43 0.74 -27.16 16 22 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.67 7.90 -51.93 -0.41 0.26 16 30 H 0.04 0.32 8.02 -51.93 -0.42 -0.09 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.04 0.40 7.69 -51.93 -0.40 0.00 16 36 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.93 7.88 -51.93 -0.41 0.52 16 39 H 0.09 0.99 7.23 -51.93 -0.38 0.61 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.55 7.90 -51.93 -0.41 1.14 16 42 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -34.44 355.14 -9.88 -44.32 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -8.20 Total: -3.30 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.26 Total: -5.98 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.84 Total: -44.05 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.44 -9.88 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360599834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.449 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds