Wall clock time and date at job start Tue Mar 31 2020 02:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.90498 * 2 1 4 4 C 1.54007 * 110.07211 * 238.80092 * 2 1 3 5 5 H 1.08991 * 110.32766 * 0.75214 * 4 2 1 6 6 N 1.46902 * 110.32022 * 122.86220 * 4 2 1 7 7 C 1.48534 * 110.99721 * 176.47290 * 6 4 2 8 8 C 1.54938 * 103.22724 * 159.72065 * 7 6 4 9 9 C 1.54597 * 102.92230 * 322.58873 * 8 7 6 10 10 C 1.47895 * 111.00408 * 293.86659 * 6 4 2 11 11 C 1.54614 * 105.04381 * 241.85249 * 4 2 1 12 12 C 1.54597 * 102.91299 * 21.70543 * 11 4 2 13 13 N 1.47490 * 109.91158 * 121.09191 * 2 1 3 14 14 C 1.34775 * 127.03330 * 274.07220 * 13 2 1 15 15 O 1.21283 * 119.99992 * 359.97438 * 14 13 2 16 16 C 1.50697 * 119.99842 * 180.02562 * 14 13 2 17 17 C 1.53006 * 109.46866 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.46879 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00433 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00016 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00175 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47336 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47300 * 300.00115 * 22 20 18 25 25 H 1.48508 * 109.47405 * 60.00298 * 22 20 18 26 26 H 1.08996 * 109.47076 * 300.36333 * 1 2 3 27 27 H 1.09000 * 109.46687 * 60.36610 * 1 2 3 28 28 H 1.09007 * 109.46979 * 180.36190 * 1 2 3 29 29 H 1.09001 * 110.66808 * 278.15891 * 7 6 4 30 30 H 1.09000 * 110.66559 * 41.28337 * 7 6 4 31 31 H 1.09003 * 110.72320 * 204.22557 * 8 7 6 32 32 H 1.09004 * 110.87488 * 81.02101 * 8 7 6 33 33 H 1.09005 * 110.30606 * 263.04096 * 9 8 7 34 34 H 1.09000 * 110.30659 * 140.87256 * 9 8 7 35 35 H 1.09004 * 109.92045 * 333.51575 * 10 6 4 36 36 H 1.09001 * 109.91426 * 94.60846 * 10 6 4 37 37 H 1.08999 * 110.73499 * 140.19051 * 11 4 2 38 38 H 1.08998 * 110.74651 * 263.51287 * 11 4 2 39 39 H 1.08999 * 110.61792 * 204.34899 * 12 11 4 40 40 H 1.08998 * 110.54402 * 81.34399 * 12 11 4 41 41 H 1.08994 * 109.47229 * 59.99926 * 16 14 13 42 42 H 1.08999 * 109.47137 * 299.99404 * 16 14 13 43 43 H 1.09002 * 109.46809 * 60.00419 * 17 16 14 44 44 H 1.08991 * 109.47245 * 300.00107 * 17 16 14 45 45 H 0.96999 * 119.99993 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0586 -0.7493 -1.2373 5 1 1.2287 -1.1037 -1.8485 6 7 2.9358 0.1252 -2.0271 7 6 3.5214 -0.6081 -3.1785 8 6 3.9450 0.5275 -4.1437 9 6 2.8082 1.5624 -3.9799 10 6 2.1752 1.2512 -2.6110 11 6 2.8579 -1.9455 -0.6710 12 6 2.2720 -2.1108 0.7501 13 7 2.0323 -0.7161 1.1875 14 6 2.2370 -0.2047 2.4175 15 8 2.0017 0.9651 2.6347 16 6 2.7592 -1.0861 3.5227 17 6 2.9008 -0.2650 4.8060 18 6 3.4224 -1.1465 5.9113 19 1 3.6324 -2.1881 5.7179 20 6 3.6317 -0.6234 7.1697 21 7 3.3755 0.6449 7.4056 22 14 4.2789 -1.7159 8.5397 23 1 4.4163 -0.9190 9.7853 24 1 3.3309 -2.8355 8.7697 25 1 5.6049 -2.2615 8.1531 26 1 -0.3633 0.5194 0.8867 27 1 -0.3633 0.5081 -0.8933 28 1 -0.3633 -1.0277 0.0065 29 1 4.3884 -1.1890 -2.8639 30 1 2.7750 -1.2510 -3.6450 31 1 3.9909 0.1641 -5.1703 32 1 4.9019 0.9550 -3.8442 33 1 2.0707 1.4430 -4.7737 34 1 3.2136 2.5742 -3.9881 35 1 1.1311 0.9664 -2.7409 36 1 2.2440 2.1228 -1.9601 37 1 2.6864 -2.8414 -1.2676 38 1 3.9212 -1.7109 -0.6220 39 1 2.9902 -2.6018 1.4067 40 1 1.3365 -2.6692 0.7156 41 1 3.7323 -1.4866 3.2389 42 1 2.0632 -1.9078 3.6917 43 1 1.9278 0.1358 5.0900 44 1 3.5968 0.5565 4.6368 45 1 3.5231 1.0131 8.2908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360599834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:49 Heat of formation + Delta-G solvation = -62.256060 kcal Electronic energy + Delta-G solvation = -22555.365770 eV Core-core repulsion = 19378.143508 eV Total energy + Delta-G solvation = -3177.222262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42257 -39.88367 -38.01445 -35.59099 -33.72053 -32.86664 -32.21357 -30.48686 -29.63962 -27.70332 -26.31092 -24.51718 -23.16869 -22.39949 -21.57952 -21.01109 -19.74015 -18.82858 -17.93194 -17.38454 -16.74857 -16.73437 -16.44590 -16.20210 -15.41013 -14.89481 -14.57032 -14.50981 -14.28416 -14.19420 -14.07015 -13.61825 -13.41894 -13.37532 -13.19569 -13.06406 -12.77848 -12.53477 -12.44354 -12.22658 -12.13885 -11.99318 -11.93756 -11.83871 -11.61101 -11.58125 -11.39012 -11.33202 -10.71595 -10.56722 -9.68752 -9.34744 -8.18147 -6.33044 1.41628 1.46972 1.54650 1.69235 1.98613 2.43338 2.96819 3.14372 3.36042 3.62584 3.74054 3.87981 4.04908 4.06933 4.13364 4.26324 4.35699 4.37230 4.42901 4.44522 4.50570 4.54857 4.60768 4.65399 4.71659 4.77918 4.93521 4.94628 4.99199 5.02491 5.05463 5.09104 5.13193 5.20805 5.23709 5.32529 5.45385 5.53071 5.60163 5.83453 5.96547 6.14165 6.16121 6.56651 6.85126 7.26244 7.37327 8.94639 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.003283 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.668442 B = 8526.464483 C = 8636.525660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 H 0.052 0.948 4 C 0.078 3.922 5 H 0.082 0.918 6 N -0.535 5.535 7 C 0.038 3.962 8 C -0.122 4.122 9 C -0.128 4.128 10 C 0.031 3.969 11 C -0.118 4.118 12 C 0.092 3.908 13 N -0.619 5.619 14 C 0.526 3.474 15 O -0.594 6.594 16 C -0.109 4.109 17 C 0.045 3.955 18 C -0.544 4.544 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.261 1.261 25 H -0.261 1.261 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.102 0.898 43 H -0.020 1.020 44 H -0.021 1.021 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -8.798 -27.455 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.027 3.973 3 H 0.070 0.930 4 C -0.032 4.032 5 H 0.099 0.901 6 N -0.260 5.260 7 C -0.089 4.089 8 C -0.160 4.160 9 C -0.166 4.166 10 C -0.097 4.097 11 C -0.156 4.156 12 C -0.029 4.029 13 N -0.353 5.353 14 C 0.317 3.683 15 O -0.475 6.475 16 C -0.149 4.149 17 C 0.007 3.993 18 C -0.582 4.582 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.800 3.200 23 H -0.213 1.213 24 H -0.185 1.185 25 H -0.186 1.186 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.121 0.879 43 H -0.001 1.001 44 H -0.003 1.003 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.357 -7.834 -26.765 27.987 hybrid contribution -0.448 0.284 0.758 0.925 sum -2.805 -7.551 -26.006 27.225 Atomic orbital electron populations 1.22091 0.93969 1.03058 1.01796 1.21631 0.94328 0.96496 0.84841 0.92995 1.22724 0.94977 0.92646 0.92812 0.90085 1.64781 1.31201 1.09037 1.20979 1.23257 0.99588 0.96235 0.89838 1.22486 0.98333 0.95353 0.99830 1.22389 0.98351 1.00079 0.95745 1.22871 0.96549 0.94497 0.95765 1.22746 1.00170 0.97801 0.94859 1.22795 1.02205 0.81820 0.96123 1.48957 1.64938 1.13076 1.08316 1.21079 0.76336 0.87840 0.83032 1.90640 1.54087 1.20061 1.82686 1.21572 1.02496 0.98442 0.92364 1.18672 0.94598 0.94251 0.91792 1.21666 1.43964 0.97147 0.95388 0.90466 1.26190 0.95718 0.96535 1.02111 1.70190 1.49723 1.15079 1.22893 0.85329 0.79379 0.78265 0.76992 1.21313 1.18513 1.18586 0.95077 0.89941 0.90414 0.89738 0.92154 0.89110 0.91739 0.89936 0.91286 0.92817 0.92661 0.86592 0.90793 0.88924 0.88656 0.88188 0.87934 1.00121 1.00283 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.32 71.98 0.67 -2.89 16 2 C 0.13 3.57 2.72 45.14 0.12 3.69 16 3 H 0.05 1.81 7.16 -2.39 -0.02 1.79 16 4 C 0.08 1.44 2.05 45.80 0.09 1.54 16 5 H 0.08 1.15 7.56 -2.39 -0.02 1.14 16 6 N -0.53 -10.53 5.01 -852.69 -4.27 -14.79 16 7 C 0.04 0.51 5.82 86.65 0.50 1.02 16 8 C -0.12 -1.51 7.06 31.80 0.22 -1.29 16 9 C -0.13 -1.72 6.93 31.47 0.22 -1.50 16 10 C 0.03 0.57 5.85 86.45 0.51 1.07 16 11 C -0.12 -1.87 5.89 31.69 0.19 -1.68 16 12 C 0.09 1.87 6.92 86.61 0.60 2.47 16 13 N -0.62 -19.50 2.92 -786.40 -2.30 -21.80 16 14 C 0.53 22.82 7.89 87.66 0.69 23.52 16 15 O -0.59 -32.29 16.32 -3.04 -0.05 -32.34 16 16 C -0.11 -4.73 4.57 29.85 0.14 -4.59 16 17 C 0.04 2.60 4.26 29.85 0.13 2.73 16 18 C -0.54 -31.87 9.11 25.60 0.23 -31.63 16 19 H 0.08 4.08 7.74 -2.91 -0.02 4.06 16 20 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 21 N -0.94 -61.12 13.29 21.45 0.28 -60.84 16 22 Si 0.98 45.04 29.54 68.60 2.03 47.07 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.08 1.12 7.90 -2.39 -0.02 1.11 16 30 H 0.06 0.64 8.02 -2.39 -0.02 0.62 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 0.86 7.69 -2.38 -0.02 0.84 16 36 H 0.05 1.26 7.89 -2.39 -0.02 1.24 16 37 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.40 7.88 -2.39 -0.02 1.38 16 39 H 0.09 1.80 7.23 -2.39 -0.02 1.78 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 3.87 7.90 -2.39 -0.02 3.85 16 42 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 43 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 44 H -0.02 -1.41 8.10 -2.39 -0.02 -1.43 16 45 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -81.31 355.14 1.40 -79.90 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.93 Total: 10.38 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.78 Total: -7.58 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -6.28 Total: -97.43 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.05 Total: -32.34 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -81.31 1.40 -79.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360599834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.648 kcal (2) G-P(sol) polarization free energy of solvation -81.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds