Wall clock time and date at job start Tue Mar 31 2020 02:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.87229 * 2 1 4 4 C 1.54317 * 109.88487 * 121.02141 * 2 1 3 5 5 H 1.09003 * 110.71730 * 215.58778 * 4 2 1 6 6 N 1.46900 * 110.72056 * 338.86022 * 4 2 1 7 7 C 1.48538 * 111.00041 * 169.81188 * 6 4 2 8 8 C 1.54934 * 103.22602 * 159.72175 * 7 6 4 9 9 C 1.54593 * 102.92220 * 322.58377 * 8 7 6 10 10 C 1.47905 * 111.00186 * 287.20660 * 6 4 2 11 11 C 1.55158 * 102.94279 * 97.22430 * 4 2 1 12 12 C 1.54910 * 101.58163 * 35.50348 * 11 4 2 13 13 N 1.47024 * 109.87974 * 238.99115 * 2 1 3 14 14 C 1.34770 * 125.65157 * 59.48254 * 13 2 1 15 15 O 1.21286 * 120.00031 * 0.02562 * 14 13 2 16 16 C 1.50702 * 120.00537 * 179.97438 * 14 13 2 17 17 C 1.52996 * 109.47620 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47162 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00128 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00365 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99460 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00408 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47265 * 90.00344 * 22 20 18 24 24 H 1.48499 * 109.47231 * 209.99917 * 22 20 18 25 25 H 1.48497 * 109.47269 * 330.00041 * 22 20 18 26 26 H 1.08998 * 109.47431 * 305.59897 * 1 2 3 27 27 H 1.08998 * 109.47527 * 65.60675 * 1 2 3 28 28 H 1.09006 * 109.46989 * 185.60224 * 1 2 3 29 29 H 1.08997 * 110.66322 * 278.15764 * 7 6 4 30 30 H 1.08995 * 110.66253 * 41.28519 * 7 6 4 31 31 H 1.08995 * 110.72510 * 204.22911 * 8 7 6 32 32 H 1.08999 * 110.88152 * 81.01517 * 8 7 6 33 33 H 1.08998 * 110.31491 * 263.04384 * 9 8 7 34 34 H 1.09003 * 110.31075 * 140.87693 * 9 8 7 35 35 H 1.09001 * 109.91695 * 333.51061 * 10 6 4 36 36 H 1.09003 * 109.91200 * 94.79997 * 10 6 4 37 37 H 1.09000 * 110.99943 * 153.57759 * 11 4 2 38 38 H 1.08999 * 111.00140 * 277.42402 * 11 4 2 39 39 H 1.08994 * 110.36691 * 81.82731 * 12 11 4 40 40 H 1.08998 * 110.36749 * 204.04218 * 12 11 4 41 41 H 1.09005 * 109.47258 * 300.00783 * 16 14 13 42 42 H 1.09001 * 109.46719 * 59.99733 * 16 14 13 43 43 H 1.08997 * 109.46954 * 300.00034 * 17 16 14 44 44 H 1.08992 * 109.47331 * 60.00026 * 17 16 14 45 45 H 0.97003 * 119.99863 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 1.2436 5 1 2.9657 -0.2809 1.6185 6 7 1.0266 -0.7997 2.2914 7 6 1.4285 -1.7191 3.3867 8 6 0.5492 -1.2588 4.5764 9 6 0.5137 0.2773 4.4061 10 6 0.8461 0.5254 2.9231 11 6 2.3519 -2.1686 0.6951 12 6 2.8568 -1.8507 -0.7345 13 7 2.0300 -0.7123 -1.1850 14 6 1.7741 -0.3817 -2.4663 15 8 1.0768 0.5784 -2.7172 16 6 2.3554 -1.2042 -3.5873 17 6 1.9151 -0.6190 -4.9306 18 6 2.4959 -1.4419 -6.0516 19 1 3.1166 -2.2971 -5.8282 20 6 2.2341 -1.1038 -7.3623 21 7 1.4779 -0.0628 -7.6343 22 14 2.9546 -2.1234 -8.7518 23 1 2.0116 -3.2147 -9.1054 24 1 3.1765 -1.2575 -9.9376 25 1 4.2483 -2.7086 -8.3170 26 1 -0.3634 0.5982 0.8356 27 1 -0.3634 0.4244 -0.9359 28 1 -0.3633 -1.0228 0.1003 29 1 1.2069 -2.7529 3.1218 30 1 2.4862 -1.5990 3.6209 31 1 1.0111 -1.5310 5.5254 32 1 -0.4542 -1.6782 4.5031 33 1 1.2620 0.7463 5.0450 34 1 -0.4792 0.6612 4.6406 35 1 1.7659 1.1045 2.8405 36 1 0.0250 1.0571 2.4423 37 1 3.1271 -2.6601 1.2830 38 1 1.4452 -2.7727 0.6640 39 1 3.9091 -1.5676 -0.7109 40 1 2.7106 -2.7104 -1.3883 41 1 3.4434 -1.1882 -3.5234 42 1 2.0018 -2.2320 -3.5049 43 1 0.8272 -0.6348 -4.9948 44 1 2.2690 0.4086 -5.0128 45 1 1.2940 0.1754 -8.5565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360599836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:54 Heat of formation + Delta-G solvation = -33.800412 kcal Electronic energy + Delta-G solvation = -22570.369163 eV Core-core repulsion = 19394.380831 eV Total energy + Delta-G solvation = -3175.988332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.38401 -38.77305 -36.76123 -33.45854 -32.66444 -31.42962 -30.79965 -29.17897 -28.92807 -25.68931 -25.38058 -23.08019 -22.19789 -21.30558 -20.80104 -19.68863 -18.43888 -17.04347 -16.59381 -16.18874 -15.86867 -15.26936 -15.03297 -14.40353 -14.29617 -14.25866 -13.65662 -13.29807 -13.17554 -12.78550 -12.43003 -12.33938 -12.21866 -12.15107 -11.82019 -11.78656 -11.56187 -11.33689 -11.21512 -11.07704 -10.93526 -10.89652 -10.72637 -10.56714 -10.51705 -9.90525 -9.59657 -9.11014 -8.91969 -8.67346 -8.34053 -8.26760 -5.93045 -3.97276 3.22397 3.31100 3.35256 3.41222 3.43964 3.76260 4.16945 4.34554 4.48754 4.51695 4.59313 4.65559 4.92515 4.97599 5.11198 5.19929 5.29738 5.31950 5.41776 5.42334 5.48024 5.50569 5.54892 5.61755 5.66580 5.67874 5.71326 5.77175 5.85268 5.99199 6.06949 6.25402 6.28684 6.33578 6.54151 6.62485 6.77626 6.82977 6.96481 7.77929 7.90771 7.94914 8.11119 8.42294 8.83597 9.11404 9.65950 11.17982 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.045894 B = 0.003127 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.951955 B = 8951.585048 C = 9361.519107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.145 3.855 3 H 0.064 0.936 4 C 0.066 3.934 5 H 0.057 0.943 6 N -0.501 5.501 7 C 0.036 3.964 8 C -0.123 4.123 9 C -0.131 4.131 10 C 0.030 3.970 11 C -0.125 4.125 12 C 0.103 3.897 13 N -0.626 5.626 14 C 0.528 3.472 15 O -0.530 6.530 16 C -0.124 4.124 17 C 0.037 3.963 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 -3.782 26.425 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.044 4.044 5 H 0.074 0.926 6 N -0.225 5.225 7 C -0.092 4.092 8 C -0.162 4.162 9 C -0.170 4.170 10 C -0.097 4.097 11 C -0.163 4.163 12 C -0.021 4.021 13 N -0.364 5.364 14 C 0.319 3.681 15 O -0.405 6.405 16 C -0.164 4.164 17 C 0.000 4.000 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.625 -3.282 25.761 25.976 hybrid contribution 1.266 -0.242 -0.386 1.346 sum 1.891 -3.524 25.375 25.688 Atomic orbital electron populations 1.21975 0.93892 1.02477 1.02031 1.21319 0.95809 0.95021 0.83803 0.91758 1.22872 0.92586 0.96805 0.92099 0.92554 1.64799 1.41330 1.07153 1.09253 1.23206 0.97429 0.97932 0.90614 1.22466 1.00726 0.95355 0.97604 1.22405 1.02133 0.96538 0.95878 1.23002 1.01322 0.91455 0.93966 1.22862 1.02101 0.95970 0.95351 1.22272 0.94840 0.90061 0.94892 1.48830 1.51924 1.30508 1.05116 1.21268 0.79958 0.85217 0.81683 1.90657 1.38055 1.28910 1.82918 1.21847 1.00660 0.98999 0.94883 1.18900 0.97392 0.96354 0.87381 1.21220 1.31246 1.12894 0.91063 0.92647 1.25027 0.95280 0.95211 0.98896 1.70004 1.37469 1.26213 1.19166 0.86592 0.79431 0.80067 0.81860 1.20677 1.21237 1.19906 0.91968 0.91770 0.92286 0.89853 0.93816 0.91218 0.90669 0.91668 0.90979 0.93712 0.89658 0.90301 0.89522 0.91608 0.89997 0.90453 0.90399 0.95821 0.95849 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.31 37.16 0.31 -1.81 16 2 C 0.14 2.01 3.18 -66.96 -0.21 1.80 16 3 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.07 0.68 2.27 -65.88 -0.15 0.53 16 5 H 0.06 0.56 7.88 -51.93 -0.41 0.15 16 6 N -0.50 -4.69 3.96 -220.32 -0.87 -5.56 16 7 C 0.04 0.26 5.74 -1.90 -0.01 0.25 16 8 C -0.12 -0.79 7.06 -24.87 -0.18 -0.97 16 9 C -0.13 -0.88 6.93 -25.38 -0.18 -1.06 16 10 C 0.03 0.26 5.85 -2.76 -0.02 0.24 16 11 C -0.12 -1.16 5.67 -24.58 -0.14 -1.30 16 12 C 0.10 1.20 6.71 -2.35 -0.02 1.18 16 13 N -0.63 -9.90 3.09 -162.77 -0.50 -10.40 16 14 C 0.53 10.86 7.63 -10.99 -0.08 10.78 16 15 O -0.53 -13.05 14.80 5.55 0.08 -12.97 16 16 C -0.12 -2.64 4.66 -27.88 -0.13 -2.77 16 17 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 18 C -0.53 -15.18 9.11 -34.44 -0.31 -15.49 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 26 H 0.06 0.78 5.30 -51.93 -0.28 0.51 16 27 H 0.06 1.15 6.57 -51.93 -0.34 0.81 16 28 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 29 H 0.08 0.59 7.98 -51.93 -0.41 0.18 16 30 H 0.04 0.31 8.02 -51.93 -0.42 -0.11 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.38 7.61 -51.93 -0.40 -0.01 16 36 H 0.09 0.78 6.14 -51.93 -0.32 0.46 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.92 7.51 -51.93 -0.39 0.53 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.52 7.86 -51.93 -0.41 1.12 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -33.87 347.34 -9.65 -43.52 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.98 Total: -3.52 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.33 Total: -6.11 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.64 Total: -43.07 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.87 -9.65 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360599836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.724 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds