Wall clock time and date at job start Tue Mar 31 2020 02:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.87229 * 2 1 4 4 C 1.54317 * 109.88487 * 121.02141 * 2 1 3 5 5 H 1.09003 * 110.71730 * 215.58778 * 4 2 1 6 6 N 1.46900 * 110.72056 * 338.86022 * 4 2 1 7 7 C 1.48538 * 111.00041 * 169.81188 * 6 4 2 8 8 C 1.54934 * 103.22602 * 159.72175 * 7 6 4 9 9 C 1.54593 * 102.92220 * 322.58377 * 8 7 6 10 10 C 1.47905 * 111.00186 * 287.20660 * 6 4 2 11 11 C 1.55158 * 102.94279 * 97.22430 * 4 2 1 12 12 C 1.54910 * 101.58163 * 35.50348 * 11 4 2 13 13 N 1.47024 * 109.87974 * 238.99115 * 2 1 3 14 14 C 1.34770 * 125.65157 * 59.48254 * 13 2 1 15 15 O 1.21286 * 120.00031 * 0.02562 * 14 13 2 16 16 C 1.50702 * 120.00537 * 179.97438 * 14 13 2 17 17 C 1.52996 * 109.47620 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47162 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00128 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00365 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99460 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00408 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47265 * 90.00344 * 22 20 18 24 24 H 1.48499 * 109.47231 * 209.99917 * 22 20 18 25 25 H 1.48497 * 109.47269 * 330.00041 * 22 20 18 26 26 H 1.08998 * 109.47431 * 305.59897 * 1 2 3 27 27 H 1.08998 * 109.47527 * 65.60675 * 1 2 3 28 28 H 1.09006 * 109.46989 * 185.60224 * 1 2 3 29 29 H 1.08997 * 110.66322 * 278.15764 * 7 6 4 30 30 H 1.08995 * 110.66253 * 41.28519 * 7 6 4 31 31 H 1.08995 * 110.72510 * 204.22911 * 8 7 6 32 32 H 1.08999 * 110.88152 * 81.01517 * 8 7 6 33 33 H 1.08998 * 110.31491 * 263.04384 * 9 8 7 34 34 H 1.09003 * 110.31075 * 140.87693 * 9 8 7 35 35 H 1.09001 * 109.91695 * 333.51061 * 10 6 4 36 36 H 1.09003 * 109.91200 * 94.79997 * 10 6 4 37 37 H 1.09000 * 110.99943 * 153.57759 * 11 4 2 38 38 H 1.08999 * 111.00140 * 277.42402 * 11 4 2 39 39 H 1.08994 * 110.36691 * 81.82731 * 12 11 4 40 40 H 1.08998 * 110.36749 * 204.04218 * 12 11 4 41 41 H 1.09005 * 109.47258 * 300.00783 * 16 14 13 42 42 H 1.09001 * 109.46719 * 59.99733 * 16 14 13 43 43 H 1.08997 * 109.46954 * 300.00034 * 17 16 14 44 44 H 1.08992 * 109.47331 * 60.00026 * 17 16 14 45 45 H 0.97003 * 119.99863 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 1.2436 5 1 2.9657 -0.2809 1.6185 6 7 1.0266 -0.7997 2.2914 7 6 1.4285 -1.7191 3.3867 8 6 0.5492 -1.2588 4.5764 9 6 0.5137 0.2773 4.4061 10 6 0.8461 0.5254 2.9231 11 6 2.3519 -2.1686 0.6951 12 6 2.8568 -1.8507 -0.7345 13 7 2.0300 -0.7123 -1.1850 14 6 1.7741 -0.3817 -2.4663 15 8 1.0768 0.5784 -2.7172 16 6 2.3554 -1.2042 -3.5873 17 6 1.9151 -0.6190 -4.9306 18 6 2.4959 -1.4419 -6.0516 19 1 3.1166 -2.2971 -5.8282 20 6 2.2341 -1.1038 -7.3623 21 7 1.4779 -0.0628 -7.6343 22 14 2.9546 -2.1234 -8.7518 23 1 2.0116 -3.2147 -9.1054 24 1 3.1765 -1.2575 -9.9376 25 1 4.2483 -2.7086 -8.3170 26 1 -0.3634 0.5982 0.8356 27 1 -0.3634 0.4244 -0.9359 28 1 -0.3633 -1.0228 0.1003 29 1 1.2069 -2.7529 3.1218 30 1 2.4862 -1.5990 3.6209 31 1 1.0111 -1.5310 5.5254 32 1 -0.4542 -1.6782 4.5031 33 1 1.2620 0.7463 5.0450 34 1 -0.4792 0.6612 4.6406 35 1 1.7659 1.1045 2.8405 36 1 0.0250 1.0571 2.4423 37 1 3.1271 -2.6601 1.2830 38 1 1.4452 -2.7727 0.6640 39 1 3.9091 -1.5676 -0.7109 40 1 2.7106 -2.7104 -1.3883 41 1 3.4434 -1.1882 -3.5234 42 1 2.0018 -2.2320 -3.5049 43 1 0.8272 -0.6348 -4.9948 44 1 2.2690 0.4086 -5.0128 45 1 1.2940 0.1754 -8.5565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360599836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:54 Heat of formation + Delta-G solvation = -55.982590 kcal Electronic energy + Delta-G solvation = -22571.331054 eV Core-core repulsion = 19394.380831 eV Total energy + Delta-G solvation = -3176.950224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48498 -39.91257 -37.91820 -35.59533 -33.81506 -32.84785 -32.24519 -30.24068 -29.57495 -27.64599 -26.41078 -24.51682 -23.26791 -22.51128 -21.51332 -20.71914 -19.80517 -18.82258 -17.75033 -17.41360 -16.96659 -16.55996 -16.40260 -16.23461 -15.62640 -15.06425 -14.64723 -14.60389 -14.22845 -14.04411 -13.87712 -13.66890 -13.30673 -13.21984 -13.11665 -12.99542 -12.80585 -12.71524 -12.46033 -12.17635 -12.00977 -11.99480 -11.92176 -11.76126 -11.60776 -11.53246 -11.32440 -11.30576 -10.63648 -10.57536 -9.64886 -9.35962 -8.18419 -6.32990 1.41644 1.45012 1.55914 1.69804 1.96894 2.43007 3.00587 3.14375 3.31729 3.60513 3.77802 3.90160 4.04072 4.06335 4.12609 4.27451 4.34724 4.41074 4.45790 4.47530 4.49890 4.57464 4.65024 4.71944 4.78438 4.81279 4.92927 4.99348 5.01639 5.03909 5.09594 5.14498 5.18558 5.25502 5.35362 5.40820 5.46922 5.55787 5.60934 5.83890 5.97162 6.10210 6.16393 6.53454 6.85461 7.27077 7.37419 8.94540 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.045894 B = 0.003127 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.951955 B = 8951.585048 C = 9361.519107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.137 3.863 3 H 0.049 0.951 4 C 0.078 3.922 5 H 0.069 0.931 6 N -0.515 5.515 7 C 0.036 3.964 8 C -0.120 4.120 9 C -0.128 4.128 10 C 0.027 3.973 11 C -0.111 4.111 12 C 0.091 3.909 13 N -0.619 5.619 14 C 0.523 3.477 15 O -0.587 6.587 16 C -0.110 4.110 17 C 0.044 3.956 18 C -0.542 4.542 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.976 3.024 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.254 1.254 26 H 0.079 0.921 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.100 0.900 43 H -0.020 1.020 44 H -0.019 1.019 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -6.537 28.451 29.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.033 3.967 3 H 0.067 0.933 4 C -0.031 4.031 5 H 0.087 0.913 6 N -0.240 5.240 7 C -0.091 4.091 8 C -0.158 4.158 9 C -0.166 4.166 10 C -0.101 4.101 11 C -0.149 4.149 12 C -0.031 4.031 13 N -0.354 5.354 14 C 0.314 3.686 15 O -0.467 6.467 16 C -0.150 4.150 17 C 0.007 3.993 18 C -0.580 4.580 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.800 3.200 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.178 1.178 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.119 0.881 43 H -0.002 1.002 44 H -0.001 1.001 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.771 -6.087 27.859 28.651 hybrid contribution 0.570 0.662 -0.929 1.275 sum 3.341 -5.425 26.930 27.674 Atomic orbital electron populations 1.21839 0.94665 1.02263 1.00385 1.21496 0.95238 0.94982 0.84937 0.93282 1.22736 0.92920 0.96879 0.90585 0.91307 1.64754 1.41286 1.07909 1.10022 1.23278 0.98208 0.97609 0.89990 1.22469 1.00520 0.94768 0.98084 1.22392 1.02568 0.97102 0.94562 1.23013 1.00794 0.91143 0.95160 1.22855 1.02973 0.95236 0.93873 1.22690 0.95261 0.88634 0.96475 1.48742 1.51179 1.31416 1.04044 1.21072 0.79646 0.84550 0.83337 1.90637 1.40670 1.31260 1.84139 1.21583 1.01956 0.99557 0.91868 1.18672 0.94540 0.94640 0.91480 1.21697 1.31323 1.13413 0.91596 0.90520 1.26177 0.95507 0.96454 1.02425 1.70192 1.39203 1.28497 1.19993 0.85284 0.79281 0.78049 0.77407 1.19634 1.21157 1.17757 0.90270 0.96038 0.92296 0.89270 0.92727 0.89529 0.91157 0.90612 0.90850 0.93778 0.91055 0.86727 0.89932 0.89547 0.89199 0.88092 0.88135 1.00162 1.00091 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.31 71.98 0.60 -3.42 16 2 C 0.14 3.80 3.18 45.34 0.14 3.94 16 3 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 4 C 0.08 1.42 2.27 46.10 0.10 1.53 16 5 H 0.07 1.13 7.88 -2.39 -0.02 1.11 16 6 N -0.52 -8.51 3.96 -850.95 -3.37 -11.88 16 7 C 0.04 0.41 5.74 86.65 0.50 0.91 16 8 C -0.12 -1.20 7.06 31.80 0.22 -0.98 16 9 C -0.13 -1.45 6.93 31.47 0.22 -1.23 16 10 C 0.03 0.42 5.85 86.44 0.51 0.92 16 11 C -0.11 -1.67 5.67 31.99 0.18 -1.49 16 12 C 0.09 1.86 6.71 86.79 0.58 2.44 16 13 N -0.62 -19.33 3.09 -787.27 -2.43 -21.77 16 14 C 0.52 22.28 7.63 87.66 0.67 22.94 16 15 O -0.59 -31.06 14.80 -3.05 -0.05 -31.10 16 16 C -0.11 -4.71 4.66 29.85 0.14 -4.57 16 17 C 0.04 2.57 4.26 29.85 0.13 2.70 16 18 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 19 H 0.08 4.05 7.74 -2.91 -0.02 4.02 16 20 C -0.01 -0.50 5.46 84.65 0.46 -0.03 16 21 N -0.94 -60.86 13.29 21.45 0.28 -60.57 16 22 Si 0.98 44.93 29.54 68.60 2.03 46.95 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 26 H 0.08 2.06 5.30 -2.39 -0.01 2.05 16 27 H 0.02 0.81 6.57 -2.39 -0.02 0.79 16 28 H 0.06 1.74 8.10 -2.38 -0.02 1.72 16 29 H 0.09 0.93 7.98 -2.39 -0.02 0.92 16 30 H 0.05 0.53 8.02 -2.39 -0.02 0.51 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.04 0.69 7.61 -2.39 -0.02 0.67 16 36 H 0.07 1.29 6.14 -2.39 -0.01 1.27 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.73 7.51 -2.39 -0.02 1.71 16 41 H 0.10 3.82 8.14 -2.38 -0.02 3.80 16 42 H 0.10 3.82 7.86 -2.39 -0.02 3.80 16 43 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 44 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 45 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -78.84 347.34 2.09 -76.75 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.94 Total: 9.33 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 4.69 Total: -7.72 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -5.52 Total: -94.22 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.05 Total: -31.10 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -78.84 2.09 -76.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360599836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.769 kcal (2) G-P(sol) polarization free energy of solvation -78.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds