Wall clock time and date at job start Tue Mar 31 2020 02:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.36920 * 2 1 4 4 C 1.54373 * 110.32674 * 237.81268 * 2 1 3 5 5 N 1.48559 * 104.59936 * 217.25321 * 4 2 1 6 6 C 1.46895 * 111.00257 * 159.04061 * 5 4 2 7 7 C 1.48562 * 104.21902 * 39.48193 * 5 4 2 8 8 C 1.54266 * 110.32159 * 122.17760 * 2 1 3 9 9 H 1.09000 * 110.32389 * 237.89409 * 8 2 1 10 10 C 1.50698 * 110.32425 * 359.97438 * 8 2 1 11 11 O 1.21295 * 120.00019 * 64.63401 * 10 8 2 12 12 N 1.34773 * 120.00346 * 244.63191 * 10 8 2 13 13 C 1.37092 * 119.99804 * 0.02562 * 12 10 8 14 14 H 1.08007 * 119.99975 * 234.42834 * 13 12 10 15 15 C 1.38958 * 120.00273 * 54.43101 * 13 12 10 16 16 N 1.31407 * 119.99376 * 20.65621 * 15 13 12 17 17 Si 1.86794 * 119.99797 * 200.66283 * 15 13 12 18 18 H 1.48495 * 109.47731 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47307 * 120.00117 * 17 15 13 20 20 H 1.48510 * 109.47008 * 239.99287 * 17 15 13 21 21 C 1.46504 * 120.00127 * 179.97438 * 12 10 8 22 22 C 1.53867 * 110.03343 * 234.83977 * 21 12 10 23 23 C 1.54268 * 106.59914 * 240.71653 * 22 21 12 24 24 C 1.54897 * 104.19644 * 336.38999 * 23 22 21 25 25 C 1.54267 * 110.02760 * 117.67219 * 21 12 10 26 26 H 1.09004 * 109.47065 * 291.63613 * 1 2 3 27 27 H 1.09004 * 109.46620 * 51.63629 * 1 2 3 28 28 H 1.09000 * 109.46878 * 171.63573 * 1 2 3 29 29 H 1.08997 * 110.41372 * 336.03225 * 4 2 1 30 30 H 1.09002 * 110.41095 * 98.47473 * 4 2 1 31 31 H 1.09004 * 109.47205 * 59.87710 * 6 5 4 32 32 H 1.09000 * 109.47119 * 179.87775 * 6 5 4 33 33 H 1.09005 * 109.46953 * 299.87241 * 6 5 4 34 34 H 1.09001 * 110.40971 * 201.73670 * 7 5 4 35 35 H 1.09006 * 110.40740 * 79.29790 * 7 5 4 36 36 H 0.97004 * 119.99685 * 174.85295 * 16 15 13 37 37 H 1.09001 * 110.05710 * 356.26006 * 21 12 10 38 38 H 1.09001 * 110.03239 * 0.02562 * 22 21 12 39 39 H 1.08993 * 110.03241 * 121.43462 * 22 21 12 40 40 H 1.09007 * 110.48762 * 95.06905 * 23 22 21 41 41 H 1.09002 * 110.48936 * 217.71408 * 23 22 21 42 42 H 1.09000 * 110.75180 * 279.63054 * 24 23 22 43 43 H 1.08993 * 110.91489 * 156.32792 * 24 23 22 44 44 H 1.09006 * 110.48588 * 261.57346 * 25 21 12 45 45 H 1.08997 * 110.49188 * 24.21894 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0663 -0.7711 -1.2251 5 7 3.2694 -1.4829 -0.7223 6 6 3.6069 -2.6218 -1.5865 7 6 2.8806 -1.9421 0.6360 8 6 2.0658 -0.7704 1.2244 9 1 2.7067 -0.1262 1.8263 10 6 0.9224 -1.2926 2.0556 11 8 0.1687 -2.1244 1.5958 12 7 0.7372 -0.8356 3.3099 13 6 1.5887 0.1048 3.8294 14 1 2.0906 -0.0807 4.7676 15 6 1.8061 1.2968 3.1491 16 7 0.9348 1.7127 2.2577 17 14 3.3368 2.3076 3.5017 18 1 4.1517 1.6266 4.5396 19 1 4.1354 2.4472 2.2575 20 1 2.9400 3.6534 3.9886 21 6 -0.3748 -1.3429 4.1177 22 6 -1.2371 -0.1725 4.6217 23 6 -1.1891 -0.2215 6.1629 24 6 -0.8434 -1.6965 6.4855 25 6 0.1672 -2.0623 5.3701 26 1 -0.3633 0.3789 0.9553 27 1 -0.3633 0.6379 -0.8058 28 1 -0.3633 -1.0167 -0.1495 29 1 1.3230 -1.4849 -1.5802 30 1 2.3395 -0.0780 -2.0208 31 1 3.8067 -2.2646 -2.5968 32 1 4.4925 -3.1237 -1.1968 33 1 2.7719 -3.3222 -1.6072 34 1 3.7670 -2.1308 1.2417 35 1 2.2647 -2.8393 0.5722 36 1 1.0475 2.5795 1.8371 37 1 -0.9834 -2.0281 3.5276 38 1 -0.8285 0.7730 4.2650 39 1 -2.2642 -0.2896 4.2763 40 1 -0.4133 0.4439 6.5418 41 1 -2.1592 0.0437 6.5834 42 1 -1.7322 -2.3242 6.4225 43 1 -0.3809 -1.7816 7.4688 44 1 0.1870 -3.1407 5.2120 45 1 1.1620 -1.6944 5.6210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362803954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:58 Heat of formation + Delta-G solvation = -30.532523 kcal Electronic energy + Delta-G solvation = -24460.271600 eV Core-core repulsion = 21284.424974 eV Total energy + Delta-G solvation = -3175.846626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.64459 -37.93424 -36.25036 -34.12296 -32.51838 -31.23919 -29.25027 -27.91192 -27.05323 -26.29902 -24.69063 -23.88089 -21.18509 -20.31440 -20.07435 -19.20047 -18.46523 -16.40419 -15.91619 -15.38404 -15.14061 -14.56282 -14.51649 -14.16379 -13.93365 -13.52543 -13.19565 -13.05325 -12.61480 -12.38718 -11.90119 -11.74252 -11.56785 -11.50682 -11.24257 -11.02833 -10.94156 -10.69447 -10.62720 -10.48526 -10.45349 -10.35616 -10.29277 -10.10241 -9.89615 -9.82107 -9.60933 -9.60065 -8.73147 -8.16354 -8.02780 -7.22249 -6.35325 -4.14677 3.12746 3.25655 3.26383 4.02930 4.15703 4.48523 4.86415 4.93155 5.34633 5.35752 5.39633 5.50051 5.59343 5.68207 5.80790 5.95407 6.05487 6.08578 6.15696 6.19190 6.22358 6.27233 6.29696 6.34998 6.41663 6.43460 6.51526 6.54880 6.59458 6.67169 6.74888 6.78738 6.98273 6.98725 7.05341 7.15016 7.24867 7.35950 7.39466 7.42896 7.49423 7.70487 8.09807 8.68809 8.97548 9.66090 10.08568 10.65554 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.007801 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.356741 B = 3588.326039 C = 4368.286643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 H 0.073 0.927 4 C 0.032 3.968 5 N -0.518 5.518 6 C 0.016 3.984 7 C 0.043 3.957 8 C -0.088 4.088 9 H 0.107 0.893 10 C 0.526 3.474 11 O -0.611 6.611 12 N -0.444 5.444 13 C -0.347 4.347 14 H 0.080 0.920 15 C 0.062 3.938 16 N -0.845 5.845 17 Si 0.896 3.104 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.282 1.282 21 C 0.134 3.866 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.128 4.128 26 H 0.095 0.905 27 H 0.025 0.975 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.270 0.730 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -2.584 0.099 2.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 H 0.091 0.909 4 C -0.095 4.095 5 N -0.241 5.241 6 C -0.133 4.133 7 C -0.085 4.085 8 C -0.109 4.109 9 H 0.125 0.875 10 C 0.317 3.683 11 O -0.497 6.497 12 N -0.163 5.163 13 C -0.475 4.475 14 H 0.097 0.903 15 C -0.146 4.146 16 N -0.479 5.479 17 Si 0.722 3.278 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.208 1.208 21 C 0.029 3.971 22 C -0.162 4.162 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.167 4.167 26 H 0.113 0.887 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.157 -2.520 -0.284 2.788 hybrid contribution 0.072 0.250 0.086 0.274 sum 1.228 -2.271 -0.198 2.589 Atomic orbital electron populations 1.22085 0.94292 1.00717 1.03114 1.21351 0.96420 0.98153 0.90970 0.90859 1.23329 0.90770 0.97188 0.98254 1.65356 1.33857 1.22292 1.02639 1.22459 1.00230 0.93074 0.97570 1.23099 0.98356 0.97384 0.89698 1.21829 0.96624 0.96267 0.96199 0.87542 1.19970 0.85439 0.80342 0.82596 1.90465 1.49425 1.37136 1.72677 1.43414 1.24511 1.36645 1.11755 1.19021 1.22307 0.97019 1.09134 0.90287 1.25519 0.97070 0.96417 0.95640 1.69871 1.32637 1.19125 1.26292 0.86371 0.82785 0.79644 0.78974 1.19135 1.19979 1.20798 1.21544 0.89295 0.94629 0.91599 1.22353 0.98094 1.01669 0.94073 1.22265 1.00003 0.96144 0.96988 1.22426 0.98650 0.96886 0.97964 1.22655 0.99745 0.98944 0.95329 0.88679 0.95556 0.92697 0.94059 0.91264 0.91934 0.91774 0.95603 0.90834 0.93227 0.91922 0.90707 0.88743 0.93725 0.91731 0.93168 0.92448 0.92560 0.93017 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 7.65 37.16 0.28 -2.91 16 2 C -0.05 -1.05 2.65 -89.24 -0.24 -1.28 16 3 H 0.07 1.61 7.70 -51.93 -0.40 1.21 16 4 C 0.03 0.61 6.04 -2.19 -0.01 0.59 16 5 N -0.52 -9.54 5.66 -238.23 -1.35 -10.89 16 6 C 0.02 0.24 9.53 60.06 0.57 0.81 16 7 C 0.04 0.86 6.00 -2.18 -0.01 0.85 16 8 C -0.09 -1.97 2.32 -90.39 -0.21 -2.17 16 9 H 0.11 2.53 4.75 -51.93 -0.25 2.28 16 10 C 0.53 12.81 4.31 -10.99 -0.05 12.76 16 11 O -0.61 -15.99 13.54 5.54 0.08 -15.92 16 12 N -0.44 -10.49 2.36 -106.54 -0.25 -10.74 16 13 C -0.35 -8.20 6.76 -14.93 -0.10 -8.30 16 14 H 0.08 1.88 6.99 -52.48 -0.37 1.51 16 15 C 0.06 1.45 3.19 -17.47 -0.06 1.39 16 16 N -0.85 -20.23 9.13 55.50 0.51 -19.72 16 17 Si 0.90 18.70 29.19 -169.99 -4.96 13.73 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 21 C 0.13 2.87 3.29 -66.81 -0.22 2.65 16 22 C -0.12 -2.48 6.25 -25.62 -0.16 -2.64 16 23 C -0.12 -1.95 6.83 -25.07 -0.17 -2.12 16 24 C -0.12 -1.91 6.91 -24.73 -0.17 -2.08 16 25 C -0.13 -2.38 6.42 -25.07 -0.16 -2.54 16 26 H 0.09 2.37 5.41 -51.93 -0.28 2.09 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.28 6.31 -51.93 -0.33 0.95 16 29 H 0.04 0.78 7.56 -51.93 -0.39 0.39 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.39 7.97 -51.93 -0.41 -0.03 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.05 1.06 7.12 -51.93 -0.37 0.69 16 36 H 0.27 6.26 8.32 -40.82 -0.34 5.92 16 37 H 0.07 1.73 6.95 -51.93 -0.36 1.37 16 38 H 0.09 2.18 7.17 -51.93 -0.37 1.81 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 1.46 6.66 -51.93 -0.35 1.11 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -25.61 331.81 -9.34 -34.96 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.66 Total: 8.57 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -0.70 Total: -4.98 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -1.09 Total: -41.36 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.08 Total: -15.92 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.96 Total: 13.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -25.61 -9.34 -34.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362803954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.425 kcal (2) G-P(sol) polarization free energy of solvation -25.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds