Wall clock time and date at job start Tue Mar 31 2020 02:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.36920 * 2 1 4 4 C 1.54373 * 110.32674 * 237.81268 * 2 1 3 5 5 N 1.48559 * 104.59936 * 217.25321 * 4 2 1 6 6 C 1.46895 * 111.00257 * 159.04061 * 5 4 2 7 7 C 1.48562 * 104.21902 * 39.48193 * 5 4 2 8 8 C 1.54266 * 110.32159 * 122.17760 * 2 1 3 9 9 H 1.09000 * 110.32389 * 237.89409 * 8 2 1 10 10 C 1.50698 * 110.32425 * 359.97438 * 8 2 1 11 11 O 1.21295 * 120.00019 * 64.63401 * 10 8 2 12 12 N 1.34773 * 120.00346 * 244.63191 * 10 8 2 13 13 C 1.37092 * 119.99804 * 0.02562 * 12 10 8 14 14 H 1.08007 * 119.99975 * 234.42834 * 13 12 10 15 15 C 1.38958 * 120.00273 * 54.43101 * 13 12 10 16 16 N 1.31407 * 119.99376 * 20.65621 * 15 13 12 17 17 Si 1.86794 * 119.99797 * 200.66283 * 15 13 12 18 18 H 1.48495 * 109.47731 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47307 * 120.00117 * 17 15 13 20 20 H 1.48510 * 109.47008 * 239.99287 * 17 15 13 21 21 C 1.46504 * 120.00127 * 179.97438 * 12 10 8 22 22 C 1.53867 * 110.03343 * 234.83977 * 21 12 10 23 23 C 1.54268 * 106.59914 * 240.71653 * 22 21 12 24 24 C 1.54897 * 104.19644 * 336.38999 * 23 22 21 25 25 C 1.54267 * 110.02760 * 117.67219 * 21 12 10 26 26 H 1.09004 * 109.47065 * 291.63613 * 1 2 3 27 27 H 1.09004 * 109.46620 * 51.63629 * 1 2 3 28 28 H 1.09000 * 109.46878 * 171.63573 * 1 2 3 29 29 H 1.08997 * 110.41372 * 336.03225 * 4 2 1 30 30 H 1.09002 * 110.41095 * 98.47473 * 4 2 1 31 31 H 1.09004 * 109.47205 * 59.87710 * 6 5 4 32 32 H 1.09000 * 109.47119 * 179.87775 * 6 5 4 33 33 H 1.09005 * 109.46953 * 299.87241 * 6 5 4 34 34 H 1.09001 * 110.40971 * 201.73670 * 7 5 4 35 35 H 1.09006 * 110.40740 * 79.29790 * 7 5 4 36 36 H 0.97004 * 119.99685 * 174.85295 * 16 15 13 37 37 H 1.09001 * 110.05710 * 356.26006 * 21 12 10 38 38 H 1.09001 * 110.03239 * 0.02562 * 22 21 12 39 39 H 1.08993 * 110.03241 * 121.43462 * 22 21 12 40 40 H 1.09007 * 110.48762 * 95.06905 * 23 22 21 41 41 H 1.09002 * 110.48936 * 217.71408 * 23 22 21 42 42 H 1.09000 * 110.75180 * 279.63054 * 24 23 22 43 43 H 1.08993 * 110.91489 * 156.32792 * 24 23 22 44 44 H 1.09006 * 110.48588 * 261.57346 * 25 21 12 45 45 H 1.08997 * 110.49188 * 24.21894 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0663 -0.7711 -1.2251 5 7 3.2694 -1.4829 -0.7223 6 6 3.6069 -2.6218 -1.5865 7 6 2.8806 -1.9421 0.6360 8 6 2.0658 -0.7704 1.2244 9 1 2.7067 -0.1262 1.8263 10 6 0.9224 -1.2926 2.0556 11 8 0.1687 -2.1244 1.5958 12 7 0.7372 -0.8356 3.3099 13 6 1.5887 0.1048 3.8294 14 1 2.0906 -0.0807 4.7676 15 6 1.8061 1.2968 3.1491 16 7 0.9348 1.7127 2.2577 17 14 3.3368 2.3076 3.5017 18 1 4.1517 1.6266 4.5396 19 1 4.1354 2.4472 2.2575 20 1 2.9400 3.6534 3.9886 21 6 -0.3748 -1.3429 4.1177 22 6 -1.2371 -0.1725 4.6217 23 6 -1.1891 -0.2215 6.1629 24 6 -0.8434 -1.6965 6.4855 25 6 0.1672 -2.0623 5.3701 26 1 -0.3633 0.3789 0.9553 27 1 -0.3633 0.6379 -0.8058 28 1 -0.3633 -1.0167 -0.1495 29 1 1.3230 -1.4849 -1.5802 30 1 2.3395 -0.0780 -2.0208 31 1 3.8067 -2.2646 -2.5968 32 1 4.4925 -3.1237 -1.1968 33 1 2.7719 -3.3222 -1.6072 34 1 3.7670 -2.1308 1.2417 35 1 2.2647 -2.8393 0.5722 36 1 1.0475 2.5795 1.8371 37 1 -0.9834 -2.0281 3.5276 38 1 -0.8285 0.7730 4.2650 39 1 -2.2642 -0.2896 4.2763 40 1 -0.4133 0.4439 6.5418 41 1 -2.1592 0.0437 6.5834 42 1 -1.7322 -2.3242 6.4225 43 1 -0.3809 -1.7816 7.4688 44 1 0.1870 -3.1407 5.2120 45 1 1.1620 -1.6944 5.6210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362803954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:57 Heat of formation + Delta-G solvation = -44.700524 kcal Electronic energy + Delta-G solvation = -24460.885970 eV Core-core repulsion = 21284.424974 eV Total energy + Delta-G solvation = -3176.460997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39902 -39.52053 -37.91101 -35.93549 -34.11740 -33.04528 -30.91207 -29.42536 -28.62331 -27.81591 -26.52045 -25.47169 -22.81734 -21.92555 -21.51127 -20.91670 -20.18897 -18.23177 -17.63258 -17.10567 -16.74871 -16.24722 -16.00930 -15.77765 -15.45143 -15.24958 -14.78247 -14.58119 -14.13916 -14.05154 -13.51366 -13.43402 -13.25169 -13.11699 -12.89568 -12.66258 -12.43763 -12.35150 -12.25191 -12.12543 -12.02773 -11.84193 -11.82777 -11.79587 -11.54015 -11.33841 -11.32101 -11.27603 -10.55524 -10.04115 -9.51551 -9.07502 -8.17183 -6.02277 1.44142 1.53623 1.60049 2.20193 2.38349 2.92590 3.05770 3.28779 3.78646 3.87898 3.90872 4.00567 4.16010 4.21718 4.38791 4.44305 4.58390 4.63539 4.66530 4.67865 4.69793 4.78028 4.81128 4.83614 4.87768 4.92149 4.93952 4.95214 4.99181 5.11841 5.19144 5.26129 5.27826 5.32272 5.47749 5.54519 5.56046 5.59500 5.62695 5.75612 5.87271 6.08919 6.26460 6.81861 7.12888 7.78748 8.22948 8.83094 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.007801 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.356741 B = 3588.326039 C = 4368.286643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.048 4.048 3 H 0.065 0.935 4 C 0.040 3.960 5 N -0.521 5.521 6 C 0.015 3.985 7 C 0.050 3.950 8 C -0.089 4.089 9 H 0.092 0.908 10 C 0.515 3.485 11 O -0.639 6.639 12 N -0.448 5.448 13 C -0.358 4.358 14 H 0.077 0.923 15 C 0.039 3.961 16 N -0.860 5.860 17 Si 0.949 3.051 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.282 1.282 21 C 0.122 3.878 22 C -0.119 4.119 23 C -0.109 4.109 24 C -0.109 4.109 25 C -0.123 4.123 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.022 0.978 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.270 0.730 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -2.557 0.460 3.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 H 0.083 0.917 4 C -0.088 4.088 5 N -0.245 5.245 6 C -0.134 4.134 7 C -0.079 4.079 8 C -0.110 4.110 9 H 0.110 0.890 10 C 0.306 3.694 11 O -0.528 6.528 12 N -0.166 5.166 13 C -0.485 4.485 14 H 0.095 0.905 15 C -0.169 4.169 16 N -0.494 5.494 17 Si 0.774 3.226 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.207 1.207 21 C 0.018 3.982 22 C -0.157 4.157 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.161 4.161 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.065 -2.492 0.098 3.238 hybrid contribution -0.258 0.244 -0.045 0.358 sum 1.806 -2.248 0.053 2.885 Atomic orbital electron populations 1.21863 0.95174 0.99663 1.02022 1.21313 0.95579 0.97973 0.91944 0.91667 1.23265 0.90868 0.97260 0.97425 1.65384 1.33164 1.23715 1.02198 1.22571 1.00653 0.91997 0.98156 1.22993 0.98048 0.95745 0.91099 1.21793 0.95963 0.96998 0.96278 0.89000 1.20358 0.85821 0.80179 0.83066 1.90432 1.50603 1.38499 1.73304 1.43580 1.24774 1.36349 1.11848 1.19083 1.22849 0.97300 1.09299 0.90505 1.25996 0.98599 0.96964 0.95318 1.69972 1.33538 1.19260 1.26636 0.85564 0.80136 0.78337 0.78585 1.18682 1.20316 1.20742 1.21743 0.89081 0.95044 0.92304 1.22251 0.97489 0.99160 0.96831 1.22216 1.01332 0.97049 0.94021 1.22398 0.98465 0.95949 0.97866 1.22585 0.99910 0.98733 0.94917 0.91756 0.93684 0.94432 0.94402 0.88896 0.89620 0.90182 0.95971 0.89807 0.94795 0.91951 0.93151 0.92130 0.93534 0.92277 0.90570 0.90819 0.89994 0.92573 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 7.65 71.98 0.55 -5.29 16 2 C -0.05 -2.06 2.65 -9.90 -0.03 -2.08 16 3 H 0.06 2.85 7.70 -2.39 -0.02 2.83 16 4 C 0.04 1.43 6.04 86.45 0.52 1.95 16 5 N -0.52 -18.32 5.66 -907.64 -5.14 -23.46 16 6 C 0.01 0.40 9.53 127.69 1.22 1.62 16 7 C 0.05 1.99 6.00 86.45 0.52 2.51 16 8 C -0.09 -4.03 2.32 -10.64 -0.02 -4.05 16 9 H 0.09 4.41 4.75 -2.39 -0.01 4.40 16 10 C 0.51 25.88 4.31 87.66 0.38 26.25 16 11 O -0.64 -34.85 13.54 -3.08 -0.04 -34.89 16 12 N -0.45 -21.79 2.36 -609.38 -1.44 -23.22 16 13 C -0.36 -17.18 6.76 84.04 0.57 -16.62 16 14 H 0.08 3.68 6.99 -2.91 -0.02 3.66 16 15 C 0.04 1.81 3.19 84.93 0.27 2.08 16 16 N -0.86 -41.94 9.13 21.66 0.20 -41.74 16 17 Si 0.95 38.23 29.19 68.60 2.00 40.23 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 21 C 0.12 5.39 3.29 45.71 0.15 5.54 16 22 C -0.12 -4.83 6.25 31.32 0.20 -4.64 16 23 C -0.11 -3.46 6.83 31.67 0.22 -3.25 16 24 C -0.11 -3.16 6.91 31.89 0.22 -2.94 16 25 C -0.12 -4.50 6.42 31.67 0.20 -4.30 16 26 H 0.06 3.31 5.41 -2.39 -0.01 3.30 16 27 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.04 1.79 6.31 -2.39 -0.02 1.77 16 29 H 0.04 1.39 7.56 -2.39 -0.02 1.37 16 30 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.02 0.63 7.97 -2.38 -0.02 0.61 16 34 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.03 1.46 7.12 -2.38 -0.02 1.44 16 36 H 0.27 12.69 8.32 -92.71 -0.77 11.92 16 37 H 0.05 2.43 6.95 -2.39 -0.02 2.41 16 38 H 0.06 2.88 7.17 -2.39 -0.02 2.86 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.06 2.46 6.66 -2.39 -0.02 2.44 16 Total: -1.00 -56.32 331.81 1.50 -54.82 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.95 Total: 31.47 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 4.96 Total: -3.22 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -6.38 Total: -88.42 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.04 Total: -34.89 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.00 Total: 40.23 kcal Total: -56.32 1.50 -54.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362803954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.120 kcal (2) G-P(sol) polarization free energy of solvation -56.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds