Wall clock time and date at job start Tue Mar 31 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.88981 * 2 1 4 4 C 1.54686 * 111.10181 * 236.24609 * 2 1 3 5 5 N 1.47423 * 104.94321 * 205.11109 * 4 2 1 6 6 C 1.34773 * 125.65262 * 204.07340 * 5 4 2 7 7 O 1.21588 * 120.00338 * 184.74440 * 6 5 4 8 8 N 1.34781 * 119.99775 * 4.74872 * 6 5 4 9 9 C 1.46500 * 119.99955 * 174.96090 * 8 6 5 10 10 C 1.53003 * 109.46940 * 185.11627 * 9 8 6 11 11 C 1.50698 * 115.56421 * 268.79114 * 10 9 8 12 12 H 1.07998 * 120.00082 * 142.30744 * 11 10 9 13 13 C 1.37878 * 120.00134 * 322.31184 * 11 10 9 14 14 N 1.31516 * 119.99491 * 343.41876 * 13 11 10 15 15 Si 1.86798 * 120.00312 * 163.41860 * 13 11 10 16 16 H 1.48500 * 109.46920 * 89.99760 * 15 13 11 17 17 H 1.48499 * 109.46999 * 209.99913 * 15 13 11 18 18 H 1.48496 * 109.46826 * 330.00019 * 15 13 11 19 19 C 1.53004 * 117.49723 * 54.48293 * 10 9 8 20 20 C 1.53003 * 60.03137 * 107.49768 * 19 10 9 21 21 C 1.47024 * 108.70075 * 23.80819 * 5 4 2 22 22 H 1.08996 * 109.88315 * 118.74357 * 21 5 4 23 23 C 1.53005 * 109.88247 * 239.75020 * 21 5 4 24 24 C 1.54317 * 107.27234 * 359.16869 * 21 5 4 25 25 H 1.09007 * 110.72076 * 96.17283 * 24 21 5 26 26 C 1.53002 * 110.72167 * 219.26386 * 24 21 5 27 27 H 1.08996 * 109.46985 * 296.12367 * 1 2 3 28 28 H 1.09001 * 109.46579 * 56.12192 * 1 2 3 29 29 H 1.08996 * 109.47062 * 176.12363 * 1 2 3 30 30 H 1.08996 * 110.39399 * 86.19627 * 4 2 1 31 31 H 1.08999 * 110.24061 * 323.94314 * 4 2 1 32 32 H 0.96994 * 119.99930 * 354.95659 * 8 6 5 33 33 H 1.09003 * 109.47293 * 65.11855 * 9 8 6 34 34 H 1.08996 * 109.47250 * 305.11618 * 9 8 6 35 35 H 0.97011 * 119.99470 * 185.02240 * 14 13 11 36 36 H 1.09001 * 117.49429 * 359.97438 * 19 10 9 37 37 H 1.08993 * 117.49862 * 215.00357 * 19 10 9 38 38 H 1.09001 * 117.49654 * 107.48147 * 20 19 10 39 39 H 1.09000 * 117.49655 * 252.47161 * 20 19 10 40 40 H 1.08997 * 109.46554 * 58.54952 * 23 21 5 41 41 H 1.08999 * 109.46980 * 178.54391 * 23 21 5 42 42 H 1.08998 * 109.47118 * 298.54720 * 23 21 5 43 43 H 1.08998 * 109.46890 * 58.55212 * 26 24 21 44 44 H 1.09003 * 109.47218 * 178.54730 * 26 24 21 45 45 H 1.08992 * 109.47107 * 298.54735 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0869 -0.8018 -1.1999 5 7 3.4271 -1.2435 -0.7728 6 6 4.4480 -1.5611 -1.5933 7 8 5.4855 -1.9967 -1.1325 8 7 4.3190 -1.3958 -2.9247 9 6 5.4638 -1.6355 -3.8069 10 6 5.0903 -1.2565 -5.2414 11 6 4.5216 -2.3709 -6.0814 12 1 3.7241 -2.1672 -6.7805 13 6 5.0193 -3.6507 -5.9572 14 7 6.1791 -3.8511 -5.3704 15 14 4.0465 -5.0999 -6.6226 16 1 4.4361 -5.3518 -8.0332 17 1 4.3350 -6.3064 -5.8063 18 1 2.5949 -4.7935 -6.5571 19 6 4.5509 0.1550 -5.4815 20 6 5.9611 -0.2137 -5.9467 21 6 3.4674 -1.2739 0.6966 22 1 3.6676 -2.2885 1.0410 23 6 4.5555 -0.3271 1.2070 24 6 2.0862 -0.8074 1.2026 25 1 1.4467 -1.6626 1.4217 26 6 2.2347 0.0850 2.4364 27 1 -0.3633 0.4525 0.9227 28 1 -0.3632 0.5729 -0.8532 29 1 -0.3633 -1.0253 -0.0695 30 1 2.1605 -0.1647 -2.0812 31 1 1.4514 -1.6632 -1.4054 32 1 3.4683 -1.1181 -3.2987 33 1 5.7371 -2.6901 -3.7691 34 1 6.3083 -1.0294 -3.4791 35 1 6.5636 -4.7414 -5.3474 36 1 4.4618 0.8134 -4.6173 37 1 3.7845 0.2775 -6.2466 38 1 6.1222 -0.3341 -7.0180 39 1 6.8000 0.2027 -5.3890 40 1 4.3531 0.6835 0.8526 41 1 4.5622 -0.3354 2.2970 42 1 5.5262 -0.6551 0.8352 43 1 2.8520 0.9483 2.1882 44 1 1.2506 0.4233 2.7609 45 1 2.7073 -0.4808 3.2393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416719707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:34 Heat of formation + Delta-G solvation = -10.640884 kcal Electronic energy + Delta-G solvation = -23126.372600 eV Core-core repulsion = 19951.388540 eV Total energy + Delta-G solvation = -3174.984060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23083 -38.08647 -36.59186 -33.47165 -32.89644 -32.23659 -32.23173 -28.21156 -26.78149 -25.80101 -25.14769 -24.47232 -21.62839 -21.19183 -19.82849 -19.20598 -18.80220 -17.62735 -16.31764 -15.86047 -15.28315 -14.85410 -14.67768 -14.29367 -14.12386 -13.85325 -13.56329 -13.24773 -12.84469 -12.67463 -12.58644 -12.35059 -12.04262 -11.97273 -11.65954 -11.63886 -11.50760 -11.29915 -10.96205 -10.79830 -10.72768 -10.67904 -10.49483 -10.31280 -10.27423 -9.60400 -9.28835 -9.17995 -8.79378 -8.40689 -8.18222 -7.74138 -6.09655 -4.11688 3.13300 3.25106 3.34438 3.36778 3.87525 4.33346 4.33770 4.42691 4.61365 4.75623 4.99800 5.09452 5.21177 5.26622 5.30886 5.44035 5.45360 5.50885 5.54142 5.63242 5.74740 5.77947 5.81436 5.87959 5.90319 6.01493 6.03668 6.19739 6.26563 6.33287 6.44321 6.52991 6.61364 6.67829 6.76552 6.97343 7.05755 7.29664 7.54777 7.60633 7.73957 8.01174 8.37704 8.69857 8.85041 9.33559 9.46443 10.92355 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.004668 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.731319 B = 5996.362894 C = 6128.451226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.104 3.896 5 N -0.640 5.640 6 C 0.716 3.284 7 O -0.594 6.594 8 N -0.726 5.726 9 C 0.163 3.837 10 C 0.042 3.958 11 C -0.497 4.497 12 H 0.062 0.938 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.890 3.110 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.210 4.210 20 C -0.193 4.193 21 C 0.159 3.841 22 H 0.069 0.931 23 C -0.162 4.162 24 C -0.097 4.097 25 H 0.082 0.918 26 C -0.141 4.141 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.390 0.610 33 H 0.115 0.885 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.662 7.919 12.578 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.019 4.019 5 N -0.380 5.380 6 C 0.418 3.582 7 O -0.473 6.473 8 N -0.379 5.379 9 C 0.041 3.959 10 C 0.041 3.959 11 C -0.534 4.534 12 H 0.080 0.920 13 C -0.131 4.131 14 N -0.504 5.504 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.248 4.248 20 C -0.231 4.231 21 C 0.054 3.946 22 H 0.087 0.913 23 C -0.220 4.220 24 C -0.116 4.116 25 H 0.101 0.899 26 C -0.198 4.198 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.223 0.777 33 H 0.133 0.867 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.656 7.389 12.925 17.745 hybrid contribution -0.836 -0.557 -0.724 1.238 sum -10.491 6.832 12.201 17.482 Atomic orbital electron populations 1.21698 0.93924 1.02202 1.01940 1.22348 0.95881 0.99347 0.94256 0.89846 1.22240 0.84312 0.97948 0.97424 1.47648 1.11793 1.72773 1.05784 1.15557 0.82361 0.78932 0.81378 1.90864 1.28349 1.52303 1.75787 1.45427 1.16090 1.72301 1.04055 1.21190 0.83970 1.04821 0.85921 1.19195 0.97409 0.86970 0.92354 1.20481 1.19543 0.91240 1.22166 0.91973 1.24988 0.94546 0.98896 0.94702 1.69851 1.15365 1.22773 1.42370 0.86614 0.80817 0.82098 0.78698 1.20597 1.20973 1.19713 1.22846 0.97584 1.02239 1.02089 1.22974 0.91858 1.08024 1.00270 1.21262 0.94566 0.99252 0.79487 0.91322 1.22222 1.00193 0.99189 1.00395 1.22308 0.95658 0.98598 0.95015 0.89939 1.21837 1.01624 0.99664 0.96678 0.92296 0.92268 0.92324 0.91026 0.91713 0.77686 0.86720 0.94828 0.92431 0.91445 0.90578 0.90183 0.91593 0.92834 0.91971 0.91152 0.91903 0.92629 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.31 37.16 0.35 -0.72 16 2 C -0.10 -0.96 3.08 -88.59 -0.27 -1.23 16 3 H 0.08 0.81 8.04 -51.93 -0.42 0.40 16 4 C 0.10 1.31 6.10 -2.65 -0.02 1.30 16 5 N -0.64 -10.40 3.08 -168.84 -0.52 -10.92 16 6 C 0.72 15.13 8.22 -86.92 -0.71 14.41 16 7 O -0.59 -14.81 15.44 5.29 0.08 -14.73 16 8 N -0.73 -15.46 5.35 -65.22 -0.35 -15.81 16 9 C 0.16 4.04 5.43 -4.04 -0.02 4.02 16 10 C 0.04 1.01 1.85 -155.62 -0.29 0.73 16 11 C -0.50 -13.19 9.00 -34.44 -0.31 -13.50 16 12 H 0.06 1.63 7.87 -52.49 -0.41 1.22 16 13 C 0.07 1.96 5.06 -17.82 -0.09 1.87 16 14 N -0.87 -24.46 11.05 55.43 0.61 -23.84 16 15 Si 0.89 20.78 29.57 -169.99 -5.03 15.75 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C -0.21 -4.38 9.46 -26.73 -0.25 -4.63 16 20 C -0.19 -4.37 9.88 -26.69 -0.26 -4.63 16 21 C 0.16 2.17 3.41 -66.95 -0.23 1.94 16 22 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 23 C -0.16 -2.16 7.92 37.16 0.29 -1.86 16 24 C -0.10 -0.95 2.94 -88.79 -0.26 -1.21 16 25 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 26 C -0.14 -1.12 8.00 37.16 0.30 -0.82 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.07 0.89 7.20 -51.93 -0.37 0.51 16 31 H 0.06 0.79 7.98 -51.93 -0.41 0.38 16 32 H 0.39 7.50 6.64 -40.82 -0.27 7.23 16 33 H 0.12 3.27 5.32 -51.93 -0.28 2.99 16 34 H 0.03 0.85 7.88 -51.93 -0.41 0.44 16 35 H 0.27 7.18 8.32 -40.82 -0.34 6.84 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 40 H 0.05 0.69 7.53 -51.93 -0.39 0.30 16 41 H 0.06 0.67 6.73 -51.93 -0.35 0.32 16 42 H 0.07 1.18 6.90 -51.93 -0.36 0.82 16 43 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -30.39 351.23 -9.45 -39.84 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.76 Total: 8.76 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.78 Total: -4.34 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.26 Total: -50.58 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.08 Total: -14.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.39 -9.45 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416719707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.198 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds