Wall clock time and date at job start Tue Mar 31 2020 02:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.88981 * 2 1 4 4 C 1.54686 * 111.10181 * 236.24609 * 2 1 3 5 5 N 1.47423 * 104.94321 * 205.11109 * 4 2 1 6 6 C 1.34773 * 125.65262 * 204.07340 * 5 4 2 7 7 O 1.21588 * 120.00338 * 184.74440 * 6 5 4 8 8 N 1.34781 * 119.99775 * 4.74872 * 6 5 4 9 9 C 1.46500 * 119.99955 * 174.96090 * 8 6 5 10 10 C 1.53003 * 109.46940 * 185.11627 * 9 8 6 11 11 C 1.50698 * 115.56421 * 268.79114 * 10 9 8 12 12 H 1.07998 * 120.00082 * 142.30744 * 11 10 9 13 13 C 1.37878 * 120.00134 * 322.31184 * 11 10 9 14 14 N 1.31516 * 119.99491 * 343.41876 * 13 11 10 15 15 Si 1.86798 * 120.00312 * 163.41860 * 13 11 10 16 16 H 1.48500 * 109.46920 * 89.99760 * 15 13 11 17 17 H 1.48499 * 109.46999 * 209.99913 * 15 13 11 18 18 H 1.48496 * 109.46826 * 330.00019 * 15 13 11 19 19 C 1.53004 * 117.49723 * 54.48293 * 10 9 8 20 20 C 1.53003 * 60.03137 * 107.49768 * 19 10 9 21 21 C 1.47024 * 108.70075 * 23.80819 * 5 4 2 22 22 H 1.08996 * 109.88315 * 118.74357 * 21 5 4 23 23 C 1.53005 * 109.88247 * 239.75020 * 21 5 4 24 24 C 1.54317 * 107.27234 * 359.16869 * 21 5 4 25 25 H 1.09007 * 110.72076 * 96.17283 * 24 21 5 26 26 C 1.53002 * 110.72167 * 219.26386 * 24 21 5 27 27 H 1.08996 * 109.46985 * 296.12367 * 1 2 3 28 28 H 1.09001 * 109.46579 * 56.12192 * 1 2 3 29 29 H 1.08996 * 109.47062 * 176.12363 * 1 2 3 30 30 H 1.08996 * 110.39399 * 86.19627 * 4 2 1 31 31 H 1.08999 * 110.24061 * 323.94314 * 4 2 1 32 32 H 0.96994 * 119.99930 * 354.95659 * 8 6 5 33 33 H 1.09003 * 109.47293 * 65.11855 * 9 8 6 34 34 H 1.08996 * 109.47250 * 305.11618 * 9 8 6 35 35 H 0.97011 * 119.99470 * 185.02240 * 14 13 11 36 36 H 1.09001 * 117.49429 * 359.97438 * 19 10 9 37 37 H 1.08993 * 117.49862 * 215.00357 * 19 10 9 38 38 H 1.09001 * 117.49654 * 107.48147 * 20 19 10 39 39 H 1.09000 * 117.49655 * 252.47161 * 20 19 10 40 40 H 1.08997 * 109.46554 * 58.54952 * 23 21 5 41 41 H 1.08999 * 109.46980 * 178.54391 * 23 21 5 42 42 H 1.08998 * 109.47118 * 298.54720 * 23 21 5 43 43 H 1.08998 * 109.46890 * 58.55212 * 26 24 21 44 44 H 1.09003 * 109.47218 * 178.54730 * 26 24 21 45 45 H 1.08992 * 109.47107 * 298.54735 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0869 -0.8018 -1.1999 5 7 3.4271 -1.2435 -0.7728 6 6 4.4480 -1.5611 -1.5933 7 8 5.4855 -1.9967 -1.1325 8 7 4.3190 -1.3958 -2.9247 9 6 5.4638 -1.6355 -3.8069 10 6 5.0903 -1.2565 -5.2414 11 6 4.5216 -2.3709 -6.0814 12 1 3.7241 -2.1672 -6.7805 13 6 5.0193 -3.6507 -5.9572 14 7 6.1791 -3.8511 -5.3704 15 14 4.0465 -5.0999 -6.6226 16 1 4.4361 -5.3518 -8.0332 17 1 4.3350 -6.3064 -5.8063 18 1 2.5949 -4.7935 -6.5571 19 6 4.5509 0.1550 -5.4815 20 6 5.9611 -0.2137 -5.9467 21 6 3.4674 -1.2739 0.6966 22 1 3.6676 -2.2885 1.0410 23 6 4.5555 -0.3271 1.2070 24 6 2.0862 -0.8074 1.2026 25 1 1.4467 -1.6626 1.4217 26 6 2.2347 0.0850 2.4364 27 1 -0.3633 0.4525 0.9227 28 1 -0.3632 0.5729 -0.8532 29 1 -0.3633 -1.0253 -0.0695 30 1 2.1605 -0.1647 -2.0812 31 1 1.4514 -1.6632 -1.4054 32 1 3.4683 -1.1181 -3.2987 33 1 5.7371 -2.6901 -3.7691 34 1 6.3083 -1.0294 -3.4791 35 1 6.5636 -4.7414 -5.3474 36 1 4.4618 0.8134 -4.6173 37 1 3.7845 0.2775 -6.2466 38 1 6.1222 -0.3341 -7.0180 39 1 6.8000 0.2027 -5.3890 40 1 4.3531 0.6835 0.8526 41 1 4.5622 -0.3354 2.2970 42 1 5.5262 -0.6551 0.8352 43 1 2.8520 0.9483 2.1882 44 1 1.2506 0.4233 2.7609 45 1 2.7073 -0.4808 3.2393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416719707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:33 Heat of formation + Delta-G solvation = -28.237351 kcal Electronic energy + Delta-G solvation = -23127.135640 eV Core-core repulsion = 19951.388540 eV Total energy + Delta-G solvation = -3175.747100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53445 -39.54891 -38.36062 -35.07237 -34.25610 -34.01433 -33.36299 -29.16115 -28.19014 -27.53443 -26.51372 -25.69715 -23.12342 -22.51161 -21.18433 -20.94537 -20.07317 -19.12751 -17.98659 -17.23079 -16.88907 -16.52982 -16.17456 -15.79843 -15.36971 -15.07542 -14.88218 -14.52035 -14.35582 -13.92424 -13.58473 -13.46203 -13.38791 -13.31097 -12.91934 -12.88126 -12.81109 -12.68806 -12.50217 -12.32986 -12.18726 -12.10374 -11.59880 -11.51272 -11.42649 -11.16690 -11.11189 -11.04646 -10.67186 -10.16903 -9.94364 -9.36824 -8.12979 -6.20301 1.39162 1.43752 1.52534 1.70942 2.21844 2.39113 2.94640 3.16235 3.52447 3.57332 3.65562 3.86786 4.14500 4.21789 4.33132 4.39054 4.51194 4.53532 4.56277 4.66177 4.66225 4.71864 4.77833 4.83936 4.88232 4.91243 4.93366 5.02123 5.09743 5.14546 5.21005 5.24033 5.26043 5.29474 5.49153 5.52035 5.52898 5.56622 5.61837 5.78178 5.96174 6.18378 6.36044 6.78450 7.13878 7.40262 7.68654 8.88318 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.004668 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.731319 B = 5996.362894 C = 6128.451226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.087 0.913 4 C 0.094 3.906 5 N -0.636 5.636 6 C 0.709 3.291 7 O -0.642 6.642 8 N -0.720 5.720 9 C 0.179 3.821 10 C 0.010 3.990 11 C -0.507 4.507 12 H 0.064 0.936 13 C 0.025 3.975 14 N -0.901 5.901 15 Si 0.950 3.050 16 H -0.273 1.273 17 H -0.291 1.291 18 H -0.262 1.262 19 C -0.173 4.173 20 C -0.198 4.198 21 C 0.146 3.854 22 H 0.050 0.950 23 C -0.153 4.153 24 C -0.085 4.085 25 H 0.092 0.908 26 C -0.138 4.138 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.400 0.600 33 H 0.076 0.924 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.027 0.973 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 9.401 13.359 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.028 4.028 5 N -0.374 5.374 6 C 0.410 3.590 7 O -0.524 6.524 8 N -0.374 5.374 9 C 0.055 3.945 10 C 0.010 3.990 11 C -0.544 4.544 12 H 0.082 0.918 13 C -0.175 4.175 14 N -0.538 5.538 15 Si 0.776 3.224 16 H -0.199 1.199 17 H -0.217 1.217 18 H -0.186 1.186 19 C -0.211 4.211 20 C -0.236 4.236 21 C 0.042 3.958 22 H 0.068 0.932 23 C -0.211 4.211 24 C -0.104 4.104 25 H 0.111 0.889 26 C -0.195 4.195 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.236 0.764 33 H 0.094 0.906 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.780 8.907 13.714 20.754 hybrid contribution 0.118 -0.988 -0.930 1.362 sum -12.662 7.919 12.783 19.658 Atomic orbital electron populations 1.21679 0.91770 1.02626 1.03172 1.22332 0.97396 0.98750 0.92199 0.89453 1.22575 0.82340 0.98752 0.99175 1.47691 1.11984 1.71146 1.06584 1.15773 0.82875 0.78776 0.81541 1.90824 1.30730 1.54331 1.76548 1.45172 1.15677 1.72545 1.04034 1.20692 0.84683 1.02002 0.87084 1.19189 0.99801 0.88261 0.91796 1.20770 1.19317 0.92120 1.22191 0.91807 1.25708 0.95157 1.01399 0.95283 1.70004 1.16926 1.22882 1.44037 0.85668 0.79894 0.78760 0.78092 1.19900 1.21695 1.18616 1.22844 0.96390 0.99312 1.02517 1.22969 0.93268 1.07461 0.99926 1.21585 0.97472 0.98686 0.78009 0.93186 1.22145 0.97742 0.99104 1.02102 1.22301 0.92785 0.99396 0.95872 0.88924 1.21833 1.02976 0.99103 0.95599 0.90543 0.91687 0.92243 0.90726 0.91161 0.76406 0.90605 0.96575 0.92868 0.89507 0.89150 0.90563 0.91191 0.92165 0.89113 0.95403 0.92070 0.90487 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.31 71.98 0.67 -0.85 16 2 C -0.09 -1.42 3.08 -9.48 -0.03 -1.45 16 3 H 0.09 1.40 8.04 -2.39 -0.02 1.38 16 4 C 0.09 2.19 6.10 86.78 0.53 2.72 16 5 N -0.64 -20.59 3.08 -806.34 -2.49 -23.08 16 6 C 0.71 30.85 8.22 179.05 1.47 32.32 16 7 O -0.64 -33.77 15.44 -3.99 -0.06 -33.83 16 8 N -0.72 -31.21 5.35 -478.53 -2.56 -33.77 16 9 C 0.18 9.18 5.43 86.38 0.47 9.65 16 10 C 0.01 0.51 1.85 -52.90 -0.10 0.41 16 11 C -0.51 -26.88 9.00 25.60 0.23 -26.65 16 12 H 0.06 3.28 7.87 -2.91 -0.02 3.26 16 13 C 0.03 1.38 5.06 84.65 0.43 1.80 16 14 N -0.90 -52.55 11.05 21.45 0.24 -52.32 16 15 Si 0.95 43.01 29.57 68.60 2.03 45.04 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 19 C -0.17 -6.90 9.46 30.60 0.29 -6.61 16 20 C -0.20 -8.88 9.88 30.62 0.30 -8.58 16 21 C 0.15 3.92 3.41 45.34 0.15 4.08 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 C -0.15 -4.03 7.92 71.98 0.57 -3.46 16 24 C -0.08 -1.43 2.94 -9.61 -0.03 -1.46 16 25 H 0.09 1.43 8.04 -2.38 -0.02 1.41 16 26 C -0.14 -1.69 8.00 71.98 0.58 -1.12 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.68 8.07 -2.39 -0.02 0.66 16 30 H 0.07 1.70 7.20 -2.39 -0.02 1.68 16 31 H 0.07 1.59 7.98 -2.39 -0.02 1.57 16 32 H 0.40 15.24 6.64 -92.71 -0.62 14.63 16 33 H 0.08 4.54 5.32 -2.39 -0.01 4.53 16 34 H 0.02 0.85 7.88 -2.39 -0.02 0.83 16 35 H 0.26 14.73 8.32 -92.70 -0.77 13.95 16 36 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.07 3.04 8.03 -2.39 -0.02 3.02 16 40 H 0.06 1.48 7.53 -2.39 -0.02 1.46 16 41 H 0.09 1.82 6.73 -2.39 -0.02 1.80 16 42 H 0.03 0.96 6.90 -2.39 -0.02 0.94 16 43 H 0.06 0.80 6.54 -2.39 -0.02 0.78 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 0.74 7.67 -2.39 -0.02 0.73 16 Total: -1.00 -68.77 351.23 3.04 -65.73 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.35 Total: 31.42 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 5.54 Total: 0.81 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -4.81 Total: -109.17 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.06 Total: -33.83 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -68.77 3.04 -65.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416719707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.490 kcal (2) G-P(sol) polarization free energy of solvation -68.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds