Wall clock time and date at job start Tue Mar 31 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 115.56382 * 2 1 4 4 C 1.53000 * 117.49754 * 145.68387 * 2 1 3 5 5 C 1.52996 * 117.49788 * 214.30558 * 2 1 3 6 6 H 1.08998 * 117.50053 * 144.99590 * 5 2 1 7 7 C 1.53000 * 117.50041 * 359.97438 * 5 2 1 8 8 N 1.46494 * 109.47312 * 174.99853 * 7 5 2 9 9 C 1.34782 * 120.00303 * 180.02562 * 8 7 5 10 10 O 1.21586 * 119.99545 * 4.98329 * 9 8 7 11 11 N 1.34774 * 120.00354 * 184.70943 * 9 8 7 12 12 C 1.46925 * 120.63227 * 174.77336 * 11 9 8 13 13 C 1.53626 * 108.54462 * 126.36607 * 12 11 9 14 14 C 1.53041 * 109.24148 * 54.85353 * 13 12 11 15 15 C 1.53002 * 109.45775 * 178.48702 * 14 13 12 16 16 C 1.50692 * 109.47360 * 295.06863 * 15 14 13 17 17 H 1.07998 * 120.00210 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00136 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99787 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00083 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47479 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47363 * 120.00576 * 20 18 16 23 23 H 1.48509 * 109.46975 * 240.00220 * 20 18 16 24 24 C 1.53041 * 109.54091 * 298.51259 * 14 13 12 25 25 C 1.46925 * 120.62808 * 355.04542 * 11 9 8 26 26 H 1.09003 * 109.47227 * 205.69602 * 1 2 3 27 27 H 1.09004 * 109.46964 * 325.69006 * 1 2 3 28 28 H 1.08993 * 109.47552 * 85.69383 * 1 2 3 29 29 H 1.08997 * 117.49922 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.49827 * 214.97782 * 4 2 1 31 31 H 1.09002 * 109.46821 * 54.99739 * 7 5 2 32 32 H 1.08999 * 109.47187 * 295.00167 * 7 5 2 33 33 H 0.97003 * 120.00107 * 0.02562 * 8 7 5 34 34 H 1.09001 * 109.58301 * 246.20088 * 12 11 9 35 35 H 1.08998 * 109.58199 * 6.61711 * 12 11 9 36 36 H 1.08999 * 109.63172 * 294.86392 * 13 12 11 37 37 H 1.08998 * 109.42739 * 174.72392 * 13 12 11 38 38 H 1.09007 * 109.44905 * 58.52674 * 14 13 12 39 39 H 1.09000 * 109.46597 * 55.07389 * 15 14 13 40 40 H 1.09005 * 109.46820 * 175.06567 * 15 14 13 41 41 H 0.97002 * 119.99973 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.49269 * 301.41687 * 24 14 13 43 43 H 1.08993 * 109.50017 * 181.31777 * 24 14 13 44 44 H 1.09000 * 109.58884 * 353.37774 * 25 11 9 45 45 H 1.09000 * 109.58824 * 113.80155 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1209 0.7651 5 6 2.2364 -1.1210 -0.7649 6 1 3.1712 -0.8752 -1.2685 7 6 1.3588 -2.1566 -1.4707 8 7 2.2056 -3.0711 -2.2405 9 6 1.6465 -4.0719 -2.9494 10 8 0.4362 -4.1616 -3.0238 11 7 2.4289 -4.9698 -3.5803 12 6 1.8380 -6.1301 -4.2609 13 6 2.3466 -6.1576 -5.7103 14 6 3.8769 -6.1428 -5.7081 15 6 4.3893 -6.2081 -7.1483 16 6 4.0027 -7.5302 -7.7595 17 1 3.4468 -8.2515 -7.1790 18 6 4.3579 -7.8185 -9.0602 19 7 5.0344 -6.9399 -9.7672 20 14 3.8780 -9.4570 -9.8181 21 1 3.1263 -10.2619 -8.8221 22 1 3.0233 -9.2202 -11.0091 23 1 5.1027 -10.1913 -10.2259 24 6 4.3754 -4.8554 -5.0474 25 6 3.8893 -4.8101 -3.5954 26 1 -0.3634 -0.9261 0.4456 27 1 -0.3633 0.8489 0.5793 28 1 -0.3634 0.0772 -1.0247 29 1 1.6112 -1.8581 1.2688 30 1 3.1715 -0.8751 1.2684 31 1 0.6672 -1.6490 -2.1431 32 1 0.7949 -2.7216 -0.7284 33 1 3.1689 -2.9564 -2.2402 34 1 2.1359 -7.0449 -3.7487 35 1 0.7515 -6.0429 -4.2550 36 1 1.9751 -5.2837 -6.2454 37 1 1.9922 -7.0636 -6.2017 38 1 4.2475 -7.0036 -5.1515 39 1 3.9485 -5.3970 -7.7279 40 1 5.4749 -6.1094 -7.1525 41 1 5.2846 -7.1428 -10.6822 42 1 3.9847 -3.9938 -5.5889 43 1 5.4650 -4.8347 -5.0672 44 1 4.1568 -3.8518 -3.1503 45 1 4.3513 -5.6195 -3.0301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516923525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:07 Heat of formation + Delta-G solvation = -42.724642 kcal Electronic energy + Delta-G solvation = -22021.883468 eV Core-core repulsion = 18845.508152 eV Total energy + Delta-G solvation = -3176.375316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47030 -39.37043 -38.57875 -35.75807 -35.34308 -33.88199 -31.94342 -30.07250 -29.39113 -27.72632 -26.16231 -24.06576 -23.52587 -22.48648 -21.46803 -21.05508 -20.15177 -18.89281 -18.38240 -17.60389 -16.71931 -16.61997 -16.46866 -15.45038 -15.32670 -15.04973 -14.97126 -14.79252 -14.47768 -14.39153 -14.08922 -13.84134 -13.80760 -13.35644 -13.09840 -13.01427 -12.69972 -12.51139 -12.40083 -12.32117 -12.12471 -12.10491 -11.76948 -11.39463 -11.30018 -11.02594 -10.99153 -10.83071 -10.73502 -10.52109 -10.16610 -9.42519 -8.16761 -6.25447 1.39832 1.41246 1.53346 1.64565 2.10724 2.42578 2.75636 2.99864 3.17088 3.65927 3.89541 3.92745 3.98180 4.02027 4.08833 4.22144 4.27654 4.43645 4.46020 4.53922 4.59209 4.70170 4.74873 4.81932 4.90794 4.92894 4.94881 4.99034 5.01432 5.09464 5.16324 5.25605 5.31705 5.34425 5.39697 5.43966 5.53081 5.56053 5.62100 5.82374 5.91070 5.99551 6.30804 6.91594 6.96259 7.43095 7.53492 8.95275 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042223 B = 0.002879 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.984358 B = 9723.448353 C = 9988.184844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.142 4.142 3 H 0.119 0.881 4 C -0.166 4.166 5 C -0.171 4.171 6 H 0.122 0.878 7 C 0.173 3.827 8 N -0.733 5.733 9 C 0.701 3.299 10 O -0.639 6.639 11 N -0.625 5.625 12 C 0.136 3.864 13 C -0.110 4.110 14 C -0.072 4.072 15 C 0.033 3.967 16 C -0.526 4.526 17 H 0.063 0.937 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.958 3.042 21 H -0.260 1.260 22 H -0.284 1.284 23 H -0.280 1.280 24 C -0.125 4.125 25 C 0.119 3.881 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.409 0.591 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.065 0.935 39 H -0.018 1.018 40 H -0.007 1.007 41 H 0.261 0.739 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 11.808 22.089 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 H 0.137 0.863 4 C -0.203 4.203 5 C -0.190 4.190 6 H 0.140 0.860 7 C 0.049 3.951 8 N -0.391 5.391 9 C 0.402 3.598 10 O -0.521 6.521 11 N -0.361 5.361 12 C 0.012 3.988 13 C -0.148 4.148 14 C -0.091 4.091 15 C -0.004 4.004 16 C -0.564 4.564 17 H 0.081 0.919 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.783 3.217 21 H -0.184 1.184 22 H -0.210 1.210 23 H -0.205 1.205 24 C -0.163 4.163 25 C -0.003 4.003 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.248 0.752 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.000 1.000 40 H 0.011 0.989 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.594 11.767 21.912 25.130 hybrid contribution 0.295 -0.699 -1.286 1.493 sum -3.298 11.068 20.626 23.640 Atomic orbital electron populations 1.21413 0.92925 1.02443 1.01944 1.22468 0.95538 0.94801 1.03231 0.86270 1.23284 1.03193 1.01190 0.92631 1.22468 1.01667 0.99929 0.94926 0.85996 1.20649 0.92033 0.89068 0.93362 1.45168 1.11107 1.31118 1.51744 1.16038 0.84724 0.80105 0.78934 1.90855 1.14315 1.77791 1.69171 1.47376 1.07362 1.25557 1.55823 1.21556 0.98428 0.87131 0.91647 1.21838 0.96330 1.01333 0.95349 1.21030 0.94494 0.97190 0.96381 1.19024 0.94413 0.94984 0.92028 1.21714 1.34385 1.02573 0.97769 0.91863 1.25939 0.95372 1.00566 0.98174 1.70106 1.40636 1.36921 1.10072 0.85497 0.78019 0.79753 0.78395 1.18419 1.20960 1.20535 1.21943 1.01332 0.97509 0.95504 1.21806 0.78352 1.03457 0.96707 0.92810 0.90863 0.92659 0.88848 0.87191 0.92899 0.92569 0.75180 0.90102 0.90678 0.94459 0.91420 0.91633 0.99953 0.98889 0.93044 0.93401 0.89898 0.88108 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.14 -1.63 6.41 -10.80 -0.07 -1.70 16 3 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.17 -1.81 9.82 30.59 0.30 -1.51 16 5 C -0.17 -2.25 5.85 -10.80 -0.06 -2.32 16 6 H 0.12 1.33 8.04 -2.39 -0.02 1.31 16 7 C 0.17 3.43 5.04 86.38 0.44 3.86 16 8 N -0.73 -16.03 5.47 -478.54 -2.62 -18.64 16 9 C 0.70 21.45 8.29 179.05 1.49 22.93 16 10 O -0.64 -24.98 15.77 -3.99 -0.06 -25.04 16 11 N -0.62 -17.89 2.97 -836.07 -2.48 -20.37 16 12 C 0.14 4.28 6.47 86.51 0.56 4.84 16 13 C -0.11 -4.13 5.21 30.82 0.16 -3.97 16 14 C -0.07 -2.77 2.10 -10.77 -0.02 -2.80 16 15 C 0.03 1.67 4.45 29.85 0.13 1.80 16 16 C -0.53 -29.17 8.39 25.60 0.21 -28.95 16 17 H 0.06 3.35 7.05 -2.91 -0.02 3.33 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 20 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 C -0.12 -3.74 5.36 30.67 0.16 -3.57 16 25 C 0.12 2.67 6.39 86.36 0.55 3.22 16 26 H 0.05 0.71 7.90 -2.39 -0.02 0.70 16 27 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 0.78 7.83 -2.39 -0.02 0.76 16 29 H 0.09 1.10 7.94 -2.39 -0.02 1.09 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 1.23 7.77 -2.39 -0.02 1.21 16 32 H 0.06 1.21 7.87 -2.39 -0.02 1.20 16 33 H 0.41 6.51 5.89 -92.71 -0.55 5.97 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 2.57 7.00 -2.39 -0.02 2.55 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 2.72 6.91 -2.39 -0.02 2.70 16 38 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 41 H 0.26 14.99 8.31 -92.71 -0.77 14.21 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.10 1.59 5.64 -2.39 -0.01 1.58 16 45 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.34 354.47 2.54 -68.80 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.41 Total: 14.53 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 4.97 Total: -8.85 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -4.81 Total: -95.82 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -71.34 2.54 -68.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516923525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.075 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds