Wall clock time and date at job start Tue Mar 31 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.85782 * 2 1 4 4 C 1.54657 * 111.19470 * 236.19151 * 2 1 3 5 5 N 1.46764 * 105.38306 * 267.59532 * 4 2 1 6 6 C 1.46499 * 124.35178 * 162.85402 * 5 4 2 7 7 N 1.46898 * 109.47236 * 278.23762 * 6 5 4 8 8 C 1.46897 * 110.99937 * 278.66332 * 7 6 5 9 9 C 1.50704 * 109.47243 * 170.00066 * 8 7 6 10 10 H 1.07991 * 119.99811 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99898 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00222 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00152 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46888 * 59.99764 * 13 11 9 15 15 H 1.48502 * 109.47597 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.47074 * 300.00173 * 13 11 9 17 17 C 1.46903 * 111.00420 * 154.70688 * 7 6 5 18 18 C 1.53006 * 109.47201 * 289.10197 * 17 7 6 19 19 C 1.52994 * 117.49946 * 177.13974 * 18 17 7 20 20 C 1.52999 * 117.49462 * 245.76386 * 18 17 7 21 21 C 1.34415 * 111.30260 * 342.59122 * 5 4 2 22 22 O 1.21282 * 124.94741 * 180.65198 * 21 5 4 23 23 C 1.51287 * 110.11564 * 0.67209 * 21 5 4 24 24 H 1.09000 * 110.48386 * 135.06249 * 23 21 5 25 25 C 1.53000 * 110.48354 * 257.57506 * 23 21 5 26 26 H 1.08991 * 109.47517 * 296.21975 * 1 2 3 27 27 H 1.09007 * 109.46467 * 56.21930 * 1 2 3 28 28 H 1.09001 * 109.47340 * 176.21252 * 1 2 3 29 29 H 1.09001 * 110.39467 * 148.57173 * 4 2 1 30 30 H 1.08995 * 110.18113 * 26.50961 * 4 2 1 31 31 H 1.08998 * 109.47563 * 158.23495 * 6 5 4 32 32 H 1.09010 * 109.46765 * 38.23073 * 6 5 4 33 33 H 1.09001 * 109.47037 * 289.99822 * 8 7 6 34 34 H 1.08999 * 109.47521 * 49.99623 * 8 7 6 35 35 H 0.96999 * 120.00731 * 180.02562 * 12 11 9 36 36 H 1.08991 * 109.47526 * 169.09736 * 17 7 6 37 37 H 1.09003 * 109.46987 * 49.09723 * 17 7 6 38 38 H 1.08994 * 115.55938 * 31.44292 * 18 17 7 39 39 H 1.09005 * 117.50101 * 359.97438 * 19 18 17 40 40 H 1.09000 * 117.49876 * 214.97734 * 19 18 17 41 41 H 1.09001 * 117.49872 * 145.01779 * 20 18 17 42 42 H 1.09003 * 117.51679 * 359.97438 * 20 18 17 43 43 H 1.08993 * 109.47647 * 58.54475 * 25 23 21 44 44 H 1.09004 * 109.47121 * 178.54671 * 25 23 21 45 45 H 1.08999 * 109.47042 * 298.54030 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0892 -0.8023 -1.1981 5 7 2.2853 -2.1671 -0.6952 6 6 2.4545 -3.3461 -1.5482 7 7 1.1378 -3.8207 -1.9944 8 6 0.4942 -4.6389 -0.9580 9 6 -0.9389 -4.9015 -1.3433 10 1 -1.3323 -4.5003 -2.2655 11 6 -1.7477 -5.6540 -0.5183 12 7 -1.2685 -6.1430 0.6045 13 14 -3.5243 -5.9789 -0.9954 14 1 -3.5643 -6.7006 -2.2926 15 1 -4.1745 -6.8072 0.0516 16 1 -4.2461 -4.6876 -1.1250 17 6 1.2457 -4.5614 -3.2584 18 6 1.5675 -3.5879 -4.3942 19 6 1.7870 -4.1774 -5.7889 20 6 0.5081 -3.3959 -5.4813 21 6 2.2954 -2.1956 0.6486 22 8 2.4515 -3.1927 1.3212 23 6 2.0833 -0.8029 1.2001 24 1 1.3599 -0.8216 2.0153 25 6 3.4099 -0.2079 1.6766 26 1 -0.3634 0.4540 0.9218 27 1 -0.3632 0.5715 -0.8543 28 1 -0.3634 -1.0254 -0.0679 29 1 3.0393 -0.3814 -1.5269 30 1 1.3716 -0.8022 -2.0185 31 1 2.9527 -4.1344 -0.9840 32 1 3.0590 -3.0827 -2.4162 33 1 1.0241 -5.5866 -0.8622 34 1 0.5232 -4.1086 -0.0062 35 1 -1.8373 -6.6727 1.1848 36 1 0.3012 -5.0637 -3.4670 37 1 2.0413 -5.3022 -3.1786 38 1 2.1648 -2.7202 -4.1147 39 1 1.7027 -5.2587 -5.8973 40 1 2.5290 -3.6974 -6.4270 41 1 0.4086 -2.4018 -5.9171 42 1 -0.4180 -3.9632 -5.3878 43 1 4.1145 -0.1790 0.8455 44 1 3.2424 0.8037 2.0463 45 1 3.8178 -0.8245 2.4775 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839986422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:08 Heat of formation + Delta-G solvation = -7.801014 kcal Electronic energy + Delta-G solvation = -23376.971483 eV Core-core repulsion = 20202.110569 eV Total energy + Delta-G solvation = -3174.860914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30001 -37.74607 -36.23131 -35.54452 -33.14363 -32.10988 -30.44167 -27.57881 -27.04113 -25.81844 -24.55410 -23.18416 -22.09990 -21.00738 -20.45987 -19.71368 -18.87474 -16.48120 -16.33493 -15.67596 -15.36319 -15.10687 -14.70428 -14.15284 -13.96031 -13.86488 -13.64603 -13.16697 -13.04702 -12.70416 -12.48547 -12.26438 -12.07656 -11.94085 -11.82263 -11.59931 -11.31554 -11.20826 -11.00187 -10.83969 -10.77833 -10.67093 -10.51737 -10.40696 -10.09446 -9.75188 -9.53592 -9.18438 -9.15158 -8.42409 -8.26808 -7.28409 -5.94210 -3.97292 3.09641 3.34923 3.39650 3.41679 3.51908 4.10663 4.45894 4.51094 4.60871 4.85687 4.90515 5.13145 5.15574 5.25657 5.35825 5.39471 5.45495 5.50481 5.54060 5.66361 5.73585 5.80718 5.81619 5.86462 5.95644 5.97654 6.01709 6.05863 6.12614 6.15366 6.22370 6.24481 6.33753 6.40028 6.58432 6.79453 6.92613 7.39589 7.42674 7.65090 7.84311 8.15230 8.23486 8.56338 8.75513 9.10073 9.65922 11.15668 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.007099 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.292635 B = 3943.542866 C = 5356.124377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.112 3.888 5 N -0.600 5.600 6 C 0.287 3.713 7 N -0.546 5.546 8 C 0.198 3.802 9 C -0.510 4.510 10 H 0.061 0.939 11 C 0.057 3.943 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.096 3.904 18 C -0.138 4.138 19 C -0.189 4.189 20 C -0.174 4.174 21 C 0.522 3.478 22 O -0.524 6.524 23 C -0.125 4.125 24 H 0.102 0.898 25 C -0.131 4.131 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.075 0.925 33 H -0.011 1.011 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.091 0.909 37 H 0.025 0.975 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.172 13.157 -6.401 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.012 4.012 5 N -0.335 5.335 6 C 0.075 3.925 7 N -0.273 5.273 8 C 0.073 3.927 9 C -0.549 4.549 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.033 4.033 18 C -0.157 4.157 19 C -0.227 4.227 20 C -0.211 4.211 21 C 0.308 3.692 22 O -0.399 6.399 23 C -0.147 4.147 24 H 0.121 0.879 25 C -0.189 4.189 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.006 0.994 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.043 0.957 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.923 12.830 -5.996 16.227 hybrid contribution -0.643 -0.890 -0.107 1.104 sum 7.279 11.939 -6.103 15.257 Atomic orbital electron populations 1.21801 0.93390 1.03643 1.01465 1.22231 0.96990 0.98723 0.93725 0.89230 1.22062 1.00064 0.81692 0.97333 1.48212 1.71473 1.07564 1.06239 1.21701 0.91912 0.86389 0.92492 1.61858 1.18390 1.41997 1.05032 1.19734 0.93391 0.90043 0.89528 1.21090 0.95495 1.31728 1.06538 0.92076 1.24992 0.98478 0.96027 0.95022 1.69987 1.36212 1.35226 1.11639 0.86633 0.85022 0.78178 0.77954 1.20359 1.21390 1.20277 1.21514 1.01336 0.92740 0.87673 1.22375 1.02374 1.01306 0.89640 1.22936 1.00465 0.99928 0.99376 1.22927 0.93736 1.00965 1.03430 1.20715 0.75598 0.90344 0.82494 1.90749 1.49371 1.37143 1.62651 1.22054 0.99603 0.93928 0.99065 0.87945 1.21590 0.95216 1.00648 1.01413 0.92573 0.92284 0.91073 0.92076 0.89916 0.92694 0.90740 0.99362 0.94334 0.92931 0.89078 0.95695 0.88427 0.89073 0.89493 0.89563 0.88698 0.92468 0.91735 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.14 37.16 0.34 -1.55 16 2 C -0.10 -1.15 3.28 -88.89 -0.29 -1.45 16 3 H 0.09 0.80 7.90 -51.93 -0.41 0.39 16 4 C 0.11 1.45 6.91 -3.03 -0.02 1.43 16 5 N -0.60 -10.38 3.11 -175.79 -0.55 -10.93 16 6 C 0.29 5.31 5.56 -63.32 -0.35 4.96 16 7 N -0.55 -11.59 4.56 -239.98 -1.09 -12.68 16 8 C 0.20 5.34 4.57 -4.98 -0.02 5.32 16 9 C -0.51 -14.51 8.30 -34.44 -0.29 -14.80 16 10 H 0.06 1.70 7.24 -52.49 -0.38 1.32 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -27.65 13.29 55.43 0.74 -26.92 16 13 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.10 1.80 5.06 -3.82 -0.02 1.78 16 18 C -0.14 -2.06 5.54 -90.62 -0.50 -2.56 16 19 C -0.19 -2.39 10.25 -26.73 -0.27 -2.67 16 20 C -0.17 -2.39 10.18 -26.73 -0.27 -2.66 16 21 C 0.52 10.03 6.64 -10.86 -0.07 9.96 16 22 O -0.52 -12.70 16.81 5.56 0.09 -12.61 16 23 C -0.12 -1.76 3.08 -90.63 -0.28 -2.04 16 24 H 0.10 1.50 7.92 -51.93 -0.41 1.09 16 25 C -0.13 -1.45 9.17 37.16 0.34 -1.11 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 31 H 0.06 1.15 7.52 -51.93 -0.39 0.76 16 32 H 0.07 1.14 6.38 -51.92 -0.33 0.81 16 33 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 34 H 0.04 1.17 6.59 -51.93 -0.34 0.83 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.09 1.92 6.34 -51.93 -0.33 1.59 16 37 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 38 H 0.10 1.38 6.86 -51.93 -0.36 1.02 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -33.47 360.36 -10.19 -43.66 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.98 Total: 0.84 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.81 Total: -3.84 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.90 Total: -50.52 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.47 -10.19 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839986422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.860 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds