Wall clock time and date at job start Tue Mar 31 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.85782 * 2 1 4 4 C 1.54657 * 111.19470 * 236.19151 * 2 1 3 5 5 N 1.46764 * 105.38306 * 267.59532 * 4 2 1 6 6 C 1.46499 * 124.35178 * 162.85402 * 5 4 2 7 7 N 1.46898 * 109.47236 * 278.23762 * 6 5 4 8 8 C 1.46897 * 110.99937 * 278.66332 * 7 6 5 9 9 C 1.50704 * 109.47243 * 170.00066 * 8 7 6 10 10 H 1.07991 * 119.99811 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99898 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00222 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00152 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46888 * 59.99764 * 13 11 9 15 15 H 1.48502 * 109.47597 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.47074 * 300.00173 * 13 11 9 17 17 C 1.46903 * 111.00420 * 154.70688 * 7 6 5 18 18 C 1.53006 * 109.47201 * 289.10197 * 17 7 6 19 19 C 1.52994 * 117.49946 * 177.13974 * 18 17 7 20 20 C 1.52999 * 117.49462 * 245.76386 * 18 17 7 21 21 C 1.34415 * 111.30260 * 342.59122 * 5 4 2 22 22 O 1.21282 * 124.94741 * 180.65198 * 21 5 4 23 23 C 1.51287 * 110.11564 * 0.67209 * 21 5 4 24 24 H 1.09000 * 110.48386 * 135.06249 * 23 21 5 25 25 C 1.53000 * 110.48354 * 257.57506 * 23 21 5 26 26 H 1.08991 * 109.47517 * 296.21975 * 1 2 3 27 27 H 1.09007 * 109.46467 * 56.21930 * 1 2 3 28 28 H 1.09001 * 109.47340 * 176.21252 * 1 2 3 29 29 H 1.09001 * 110.39467 * 148.57173 * 4 2 1 30 30 H 1.08995 * 110.18113 * 26.50961 * 4 2 1 31 31 H 1.08998 * 109.47563 * 158.23495 * 6 5 4 32 32 H 1.09010 * 109.46765 * 38.23073 * 6 5 4 33 33 H 1.09001 * 109.47037 * 289.99822 * 8 7 6 34 34 H 1.08999 * 109.47521 * 49.99623 * 8 7 6 35 35 H 0.96999 * 120.00731 * 180.02562 * 12 11 9 36 36 H 1.08991 * 109.47526 * 169.09736 * 17 7 6 37 37 H 1.09003 * 109.46987 * 49.09723 * 17 7 6 38 38 H 1.08994 * 115.55938 * 31.44292 * 18 17 7 39 39 H 1.09005 * 117.50101 * 359.97438 * 19 18 17 40 40 H 1.09000 * 117.49876 * 214.97734 * 19 18 17 41 41 H 1.09001 * 117.49872 * 145.01779 * 20 18 17 42 42 H 1.09003 * 117.51679 * 359.97438 * 20 18 17 43 43 H 1.08993 * 109.47647 * 58.54475 * 25 23 21 44 44 H 1.09004 * 109.47121 * 178.54671 * 25 23 21 45 45 H 1.08999 * 109.47042 * 298.54030 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0892 -0.8023 -1.1981 5 7 2.2853 -2.1671 -0.6952 6 6 2.4545 -3.3461 -1.5482 7 7 1.1378 -3.8207 -1.9944 8 6 0.4942 -4.6389 -0.9580 9 6 -0.9389 -4.9015 -1.3433 10 1 -1.3323 -4.5003 -2.2655 11 6 -1.7477 -5.6540 -0.5183 12 7 -1.2685 -6.1430 0.6045 13 14 -3.5243 -5.9789 -0.9954 14 1 -3.5643 -6.7006 -2.2926 15 1 -4.1745 -6.8072 0.0516 16 1 -4.2461 -4.6876 -1.1250 17 6 1.2457 -4.5614 -3.2584 18 6 1.5675 -3.5879 -4.3942 19 6 1.7870 -4.1774 -5.7889 20 6 0.5081 -3.3959 -5.4813 21 6 2.2954 -2.1956 0.6486 22 8 2.4515 -3.1927 1.3212 23 6 2.0833 -0.8029 1.2001 24 1 1.3599 -0.8216 2.0153 25 6 3.4099 -0.2079 1.6766 26 1 -0.3634 0.4540 0.9218 27 1 -0.3632 0.5715 -0.8543 28 1 -0.3634 -1.0254 -0.0679 29 1 3.0393 -0.3814 -1.5269 30 1 1.3716 -0.8022 -2.0185 31 1 2.9527 -4.1344 -0.9840 32 1 3.0590 -3.0827 -2.4162 33 1 1.0241 -5.5866 -0.8622 34 1 0.5232 -4.1086 -0.0062 35 1 -1.8373 -6.6727 1.1848 36 1 0.3012 -5.0637 -3.4670 37 1 2.0413 -5.3022 -3.1786 38 1 2.1648 -2.7202 -4.1147 39 1 1.7027 -5.2587 -5.8973 40 1 2.5290 -3.6974 -6.4270 41 1 0.4086 -2.4018 -5.9171 42 1 -0.4180 -3.9632 -5.3878 43 1 4.1145 -0.1790 0.8455 44 1 3.2424 0.8037 2.0463 45 1 3.8178 -0.8245 2.4775 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839986422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:07 Heat of formation + Delta-G solvation = -30.156654 kcal Electronic energy + Delta-G solvation = -23377.940896 eV Core-core repulsion = 20202.110569 eV Total energy + Delta-G solvation = -3175.830327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65123 -39.17459 -37.71301 -36.99283 -34.96954 -33.86567 -31.48948 -29.64652 -28.41778 -27.03648 -26.22934 -24.63175 -23.17055 -22.71906 -21.62343 -21.06255 -20.32147 -18.61881 -17.79843 -17.09975 -16.91397 -16.47323 -16.35269 -15.72240 -15.39559 -15.17926 -14.85284 -14.56279 -14.47621 -14.19961 -13.89027 -13.79686 -13.51590 -13.43230 -13.15333 -13.12604 -12.73099 -12.67277 -12.56463 -12.28313 -12.13002 -12.10330 -11.89892 -11.78592 -11.55059 -11.34410 -11.10505 -10.78871 -10.66034 -10.62404 -9.77234 -9.11838 -8.22150 -6.35414 1.34303 1.39020 1.47046 1.60880 2.17637 2.35546 2.93256 3.09058 3.32956 3.39175 3.50776 3.90826 3.91781 4.01557 4.05919 4.15386 4.30229 4.35732 4.43809 4.54940 4.58456 4.62143 4.69920 4.76423 4.80544 4.87261 4.89386 4.96876 5.00115 5.09625 5.10389 5.15159 5.17369 5.23467 5.29605 5.36345 5.41925 5.51102 5.57139 5.64215 5.98852 6.20128 6.36032 6.52298 6.82082 7.27056 7.34511 8.88563 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.007099 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.292635 B = 3943.542866 C = 5356.124377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.142 0.858 4 C 0.106 3.894 5 N -0.602 5.602 6 C 0.287 3.713 7 N -0.541 5.541 8 C 0.222 3.778 9 C -0.520 4.520 10 H 0.067 0.933 11 C -0.003 4.003 12 N -0.937 5.937 13 Si 0.972 3.028 14 H -0.263 1.263 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.097 3.903 18 C -0.150 4.150 19 C -0.166 4.166 20 C -0.175 4.175 21 C 0.501 3.499 22 O -0.595 6.595 23 C -0.120 4.120 24 H 0.090 0.910 25 C -0.123 4.123 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.015 0.985 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.119 0.881 33 H -0.057 1.057 34 H -0.004 1.004 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.281 16.631 -9.175 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.159 0.841 4 C -0.016 4.016 5 N -0.335 5.335 6 C 0.075 3.925 7 N -0.267 5.267 8 C 0.096 3.904 9 C -0.558 4.558 10 H 0.085 0.915 11 C -0.201 4.201 12 N -0.577 5.577 13 Si 0.796 3.204 14 H -0.187 1.187 15 H -0.210 1.210 16 H -0.190 1.190 17 C -0.031 4.031 18 C -0.168 4.168 19 C -0.203 4.203 20 C -0.211 4.211 21 C 0.289 3.711 22 O -0.475 6.475 23 C -0.141 4.141 24 H 0.108 0.892 25 C -0.181 4.181 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.034 0.966 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.036 0.964 32 H 0.137 0.863 33 H -0.040 1.040 34 H 0.014 0.986 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.042 16.360 -8.832 20.256 hybrid contribution -0.637 -1.991 0.739 2.217 sum 7.404 14.369 -8.093 18.077 Atomic orbital electron populations 1.21789 0.94652 1.00494 1.03165 1.22329 0.95827 1.00616 0.91456 0.84057 1.22463 1.02384 0.79113 0.97612 1.48411 1.70217 1.09048 1.05827 1.21732 0.90693 0.86455 0.93585 1.61851 1.19880 1.40582 1.04342 1.19199 0.93433 0.88057 0.89713 1.21396 0.96125 1.31651 1.06649 0.91488 1.26044 1.03861 0.95525 0.94691 1.70173 1.38287 1.36151 1.13118 0.85402 0.78407 0.78518 0.78090 1.18737 1.21027 1.19016 1.21491 0.99755 0.93826 0.88013 1.22174 1.04363 1.01268 0.88992 1.23034 1.00147 0.99976 0.97180 1.22989 0.93301 1.02238 1.02619 1.21836 0.74336 0.91765 0.83120 1.90694 1.52511 1.40041 1.64269 1.22113 1.01396 0.90986 0.99628 0.89200 1.21600 0.93285 1.01829 1.01361 0.91346 0.90080 0.96603 0.87794 0.89968 0.96391 0.86314 1.03979 0.98594 0.92883 0.91964 0.96197 0.86712 0.89422 0.86461 0.87245 0.90455 0.91063 0.88063 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.14 71.98 0.66 -2.86 16 2 C -0.08 -1.72 3.28 -9.67 -0.03 -1.75 16 3 H 0.14 1.60 7.90 -2.39 -0.02 1.58 16 4 C 0.11 2.42 6.91 86.89 0.60 3.02 16 5 N -0.60 -21.10 3.11 -828.68 -2.57 -23.67 16 6 C 0.29 11.02 5.56 170.81 0.95 11.97 16 7 N -0.54 -24.04 4.56 -913.15 -4.16 -28.20 16 8 C 0.22 13.02 4.57 85.56 0.39 13.41 16 9 C -0.52 -31.11 8.30 25.60 0.21 -30.90 16 10 H 0.07 3.84 7.24 -2.92 -0.02 3.82 16 11 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 12 N -0.94 -61.42 13.29 21.45 0.28 -61.14 16 13 Si 0.97 46.38 29.54 68.60 2.03 48.41 16 14 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 15 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 17 C 0.10 3.76 5.06 86.30 0.44 4.20 16 18 C -0.15 -4.14 5.54 -10.79 -0.06 -4.20 16 19 C -0.17 -3.67 10.25 30.59 0.31 -3.36 16 20 C -0.17 -4.36 10.18 30.59 0.31 -4.05 16 21 C 0.50 20.28 6.64 87.90 0.58 20.86 16 22 O -0.59 -31.69 16.81 -3.04 -0.05 -31.74 16 23 C -0.12 -3.30 3.08 -10.80 -0.03 -3.33 16 24 H 0.09 2.70 7.92 -2.39 -0.02 2.68 16 25 C -0.12 -2.44 9.17 71.98 0.66 -1.78 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.95 7.92 -2.39 -0.02 1.93 16 31 H 0.02 0.82 7.52 -2.39 -0.02 0.81 16 32 H 0.12 3.47 6.38 -2.38 -0.02 3.46 16 33 H -0.06 -3.79 8.12 -2.39 -0.02 -3.81 16 34 H 0.00 -0.27 6.59 -2.39 -0.02 -0.29 16 35 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 36 H 0.06 2.74 6.34 -2.39 -0.02 2.73 16 37 H 0.02 0.78 8.07 -2.39 -0.02 0.76 16 38 H 0.11 2.81 6.86 -2.39 -0.02 2.80 16 39 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.08 2.21 8.04 -2.39 -0.02 2.19 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -83.05 360.36 1.92 -81.14 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.94 Total: 13.71 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.45 Total: 1.49 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -6.45 Total: -113.01 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.05 Total: -31.74 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -83.05 1.92 -81.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839986422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.980 kcal (2) G-P(sol) polarization free energy of solvation -83.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds