Wall clock time and date at job start Tue Mar 31 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.88761 * 2 1 4 4 C 1.54479 * 110.96729 * 236.18699 * 2 1 3 5 5 N 1.46758 * 105.47365 * 216.46592 * 4 2 1 6 6 C 1.46503 * 124.34998 * 197.01636 * 5 4 2 7 7 N 1.46499 * 109.46798 * 99.51597 * 6 5 4 8 8 C 1.36936 * 119.99871 * 102.16601 * 7 6 5 9 9 H 1.08003 * 120.00045 * 217.11653 * 8 7 6 10 10 C 1.38815 * 119.99779 * 36.84150 * 8 7 6 11 11 N 1.31611 * 119.99953 * 25.84470 * 10 8 7 12 12 Si 1.86802 * 119.99735 * 205.84039 * 10 8 7 13 13 H 1.48494 * 109.47100 * 90.00552 * 12 10 8 14 14 H 1.48508 * 109.46973 * 210.00168 * 12 10 8 15 15 H 1.48495 * 109.47484 * 330.00062 * 12 10 8 16 16 C 1.46496 * 120.00218 * 282.16409 * 7 6 5 17 17 C 1.54270 * 110.03520 * 237.16643 * 16 7 6 18 18 C 1.54884 * 104.19762 * 217.10430 * 17 16 7 19 19 C 1.54891 * 102.74653 * 37.94591 * 18 17 16 20 20 C 1.53876 * 110.03135 * 120.00350 * 16 7 6 21 21 C 1.34416 * 111.29986 * 17.28657 * 5 4 2 22 22 O 1.21292 * 124.94104 * 179.30164 * 21 5 4 23 23 C 1.51282 * 110.11462 * 359.16980 * 21 5 4 24 24 H 1.08998 * 110.27105 * 102.75280 * 23 21 5 25 25 C 1.53002 * 110.64235 * 225.35692 * 23 21 5 26 26 H 1.08996 * 109.47120 * 182.35946 * 1 2 3 27 27 H 1.09001 * 109.46929 * 302.35696 * 1 2 3 28 28 H 1.09001 * 109.47101 * 62.35580 * 1 2 3 29 29 H 1.09000 * 110.24212 * 97.46882 * 4 2 1 30 30 H 1.08998 * 110.32250 * 335.51055 * 4 2 1 31 31 H 1.09002 * 109.46966 * 339.51997 * 6 5 4 32 32 H 1.08997 * 109.47647 * 219.51802 * 6 5 4 33 33 H 0.97004 * 120.00497 * 5.38683 * 11 10 8 34 34 H 1.09000 * 110.01795 * 358.61282 * 16 7 6 35 35 H 1.09006 * 110.48519 * 335.78761 * 17 16 7 36 36 H 1.09001 * 110.48367 * 98.42619 * 17 16 7 37 37 H 1.08999 * 110.76145 * 279.62873 * 18 17 16 38 38 H 1.09007 * 110.91117 * 156.32911 * 18 17 16 39 39 H 1.09007 * 110.48496 * 203.37699 * 19 18 17 40 40 H 1.08994 * 110.60050 * 80.79199 * 19 18 17 41 41 H 1.08999 * 110.02953 * 238.57066 * 20 16 7 42 42 H 1.08998 * 110.03447 * 359.94821 * 20 16 7 43 43 H 1.08996 * 109.47529 * 174.94171 * 25 23 21 44 44 H 1.09001 * 109.46844 * 294.93893 * 25 23 21 45 45 H 1.09003 * 109.47297 * 54.94036 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0828 -0.8027 -1.1985 5 7 3.2851 -1.4781 -0.6963 6 6 4.3259 -2.0564 -1.5499 7 7 5.4538 -1.1261 -1.6429 8 6 6.5869 -1.3482 -0.9069 9 1 7.1248 -0.5152 -0.4789 10 6 7.0411 -2.6445 -0.7061 11 7 6.7445 -3.5877 -1.5748 12 14 8.0733 -3.0501 0.7971 13 1 7.1829 -3.4541 1.9146 14 1 9.0002 -4.1648 0.4749 15 1 8.8576 -1.8541 1.1965 16 6 5.3694 0.0417 -2.5234 17 6 6.5292 0.0217 -3.5404 18 6 6.9273 1.5108 -3.6919 19 6 6.7773 2.0532 -2.2488 20 6 5.5272 1.3334 -1.7022 21 6 3.3058 -1.5031 0.6475 22 8 4.1787 -2.0105 1.3195 23 6 2.0834 -0.8035 1.1997 24 1 1.3505 -1.5354 1.5392 25 6 2.4707 0.1380 2.3418 26 1 -0.3633 -1.0267 0.0423 27 1 -0.3633 0.5500 0.8681 28 1 -0.3633 0.4768 -0.9104 29 1 2.3419 -0.1297 -2.0159 30 1 1.3497 -1.5367 -1.5330 31 1 3.9205 -2.2366 -2.5456 32 1 4.6664 -2.9985 -1.1203 33 1 6.2760 -3.3629 -2.3939 34 1 4.4131 0.0463 -3.0465 35 1 7.3662 -0.5595 -3.1532 36 1 6.1924 -0.3821 -4.4952 37 1 6.2472 2.0255 -4.3706 38 1 7.9577 1.6052 -4.0348 39 1 6.6216 3.1320 -2.2610 40 1 7.6539 1.8020 -1.6517 41 1 4.6479 1.9652 -1.8274 42 1 5.6657 1.0914 -0.6484 43 1 1.5929 0.6975 2.6650 44 1 2.8580 -0.4448 3.1775 45 1 3.2371 0.8320 1.9966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840006934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:18 Heat of formation + Delta-G solvation = -29.632947 kcal Electronic energy + Delta-G solvation = -24147.314368 eV Core-core repulsion = 20971.506750 eV Total energy + Delta-G solvation = -3175.807618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.91028 -37.77826 -35.91889 -34.82461 -32.84331 -30.63422 -30.28267 -27.94655 -27.31153 -25.89537 -25.29188 -23.80543 -21.84205 -20.42728 -20.01412 -19.29644 -18.58550 -16.87559 -16.15013 -15.86924 -15.20267 -14.70896 -14.34909 -13.87786 -13.83437 -13.64029 -13.51132 -13.05352 -12.79064 -12.69461 -12.48964 -12.44870 -11.97213 -11.63990 -11.60238 -11.41765 -11.06542 -10.73438 -10.62273 -10.52303 -10.48416 -10.44497 -10.37266 -10.29712 -10.02927 -9.97578 -9.90356 -9.23465 -8.82499 -8.23936 -7.92478 -6.88526 -6.04143 -3.30719 3.44120 3.60838 3.72548 3.80778 3.95683 4.62284 4.68762 4.75544 4.84505 5.19310 5.30508 5.33686 5.35699 5.45107 5.51903 5.53821 5.59614 5.67133 5.70141 5.81624 5.87648 5.97445 6.01933 6.04243 6.12324 6.15153 6.19541 6.20674 6.31397 6.35547 6.42897 6.45492 6.50415 6.54452 6.74112 6.87484 6.94993 7.10231 7.24658 7.51797 8.02897 8.25114 8.63768 9.12334 9.14012 9.85136 10.26070 11.22120 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.008445 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.120719 B = 3314.831273 C = 4494.426139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.085 0.915 4 C 0.104 3.896 5 N -0.623 5.623 6 C 0.355 3.645 7 N -0.572 5.572 8 C -0.339 4.339 9 H 0.049 0.951 10 C 0.001 3.999 11 N -0.909 5.909 12 Si 1.060 2.940 13 H -0.285 1.285 14 H -0.294 1.294 15 H -0.294 1.294 16 C 0.170 3.830 17 C -0.130 4.130 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.129 4.129 21 C 0.515 3.485 22 O -0.513 6.513 23 C -0.127 4.127 24 H 0.096 0.904 25 C -0.128 4.128 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.266 0.734 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 9.182 -0.919 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.021 4.021 5 N -0.362 5.362 6 C 0.148 3.852 7 N -0.293 5.293 8 C -0.468 4.468 9 H 0.067 0.933 10 C -0.202 4.202 11 N -0.547 5.547 12 Si 0.891 3.109 13 H -0.212 1.212 14 H -0.220 1.220 15 H -0.221 1.221 16 C 0.063 3.937 17 C -0.169 4.169 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.168 4.168 21 C 0.300 3.700 22 O -0.387 6.387 23 C -0.149 4.149 24 H 0.114 0.886 25 C -0.186 4.186 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.753 7.596 0.185 12.363 hybrid contribution -0.891 1.488 -0.893 1.951 sum -10.643 9.084 -0.707 14.010 Atomic orbital electron populations 1.21736 0.93990 1.01999 1.01784 1.22193 0.95935 0.99481 0.94333 0.89707 1.22025 0.88055 0.95428 0.96571 1.50239 1.21790 1.57147 1.07051 1.21249 0.79576 0.93538 0.90815 1.44615 1.12220 1.26255 1.46216 1.19592 1.03892 0.94333 1.28982 0.93343 1.25800 0.99149 0.93161 1.02087 1.70812 1.39540 1.35998 1.08399 0.83606 0.75727 0.75033 0.76583 1.21177 1.22035 1.22061 1.21064 0.95075 0.87822 0.89727 1.22742 1.01104 0.94984 0.98061 1.22407 0.99879 0.97245 0.96418 1.22240 0.99011 0.97813 0.96368 1.22526 0.95801 0.96882 1.01639 1.20616 0.86446 0.79706 0.83200 1.90737 1.39534 1.45858 1.62534 1.22096 0.97890 0.98561 0.96316 0.88594 1.21542 1.00894 0.98696 0.97450 0.92424 0.92365 0.92379 0.91654 0.92301 0.93594 0.87974 0.92379 0.93821 0.89602 0.93661 0.92857 0.92707 0.93401 0.91939 0.94111 0.91171 0.92552 0.91887 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.12 37.16 0.34 -0.94 16 2 C -0.10 -1.26 3.27 -88.98 -0.29 -1.55 16 3 H 0.08 1.07 7.91 -51.93 -0.41 0.66 16 4 C 0.10 1.51 6.89 -3.13 -0.02 1.49 16 5 N -0.62 -12.29 3.17 -176.12 -0.56 -12.84 16 6 C 0.35 8.11 5.23 -63.75 -0.33 7.78 16 7 N -0.57 -13.60 2.39 -168.07 -0.40 -14.00 16 8 C -0.34 -9.26 7.54 -15.06 -0.11 -9.37 16 9 H 0.05 1.40 7.30 -52.48 -0.38 1.02 16 10 C 0.00 0.04 4.70 -17.43 -0.08 -0.04 16 11 N -0.91 -26.85 12.33 55.49 0.68 -26.17 16 12 Si 1.06 27.35 29.99 -169.99 -5.10 22.25 16 13 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 14 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 C 0.17 3.43 3.44 -66.81 -0.23 3.20 16 17 C -0.13 -2.53 6.41 -25.07 -0.16 -2.69 16 18 C -0.12 -1.98 6.91 -24.74 -0.17 -2.16 16 19 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 20 C -0.13 -2.43 6.17 -25.61 -0.16 -2.59 16 21 C 0.52 10.85 7.46 -10.86 -0.08 10.77 16 22 O -0.51 -13.46 17.57 5.55 0.10 -13.36 16 23 C -0.13 -1.92 3.08 -90.63 -0.28 -2.20 16 24 H 0.10 1.33 7.86 -51.93 -0.41 0.92 16 25 C -0.13 -1.81 9.09 37.16 0.34 -1.47 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 30 H 0.06 0.76 7.89 -51.93 -0.41 0.35 16 31 H 0.05 0.97 8.11 -51.93 -0.42 0.54 16 32 H 0.10 2.78 5.81 -51.93 -0.30 2.48 16 33 H 0.27 7.74 7.31 -40.82 -0.30 7.44 16 34 H 0.04 0.83 7.65 -51.93 -0.40 0.43 16 35 H 0.09 1.99 7.01 -51.93 -0.36 1.63 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.55 7.06 -51.93 -0.37 1.18 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -31.44 352.31 -9.42 -40.86 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.03 Total: -0.12 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.42 Total: -1.93 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.28 Total: -53.01 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.10 Total: -13.36 kcal Atomic # 14 Polarization: 27.35 SS G_CDS: -5.10 Total: 22.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.44 -9.42 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840006934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.226 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds