Wall clock time and date at job start Tue Mar 31 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.85927 * 2 1 4 4 C 1.54666 * 111.22376 * 236.21294 * 2 1 3 5 5 N 1.46758 * 105.38094 * 267.58257 * 4 2 1 6 6 C 1.46506 * 124.34868 * 162.85698 * 5 4 2 7 7 N 1.46902 * 109.46684 * 269.72551 * 6 5 4 8 8 C 1.46852 * 110.99542 * 279.20164 * 7 6 5 9 9 C 1.53043 * 109.51867 * 174.16136 * 8 7 6 10 10 C 1.53125 * 109.27376 * 59.18647 * 9 8 7 11 11 C 1.53113 * 109.16045 * 302.34120 * 10 9 8 12 12 H 1.09008 * 109.50557 * 297.71684 * 11 10 9 13 13 C 1.50701 * 109.53565 * 177.61991 * 11 10 9 14 14 H 1.08002 * 119.99842 * 240.17901 * 13 11 10 15 15 C 1.37879 * 120.00239 * 60.17610 * 13 11 10 16 16 N 1.31518 * 119.99618 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00214 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46930 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47062 * 119.99680 * 17 15 13 20 20 H 1.48505 * 109.46860 * 239.99917 * 17 15 13 21 21 C 1.46852 * 110.99522 * 155.00099 * 7 6 5 22 22 C 1.34422 * 111.30529 * 342.58780 * 5 4 2 23 23 O 1.21281 * 124.94496 * 180.65520 * 22 5 4 24 24 C 1.51277 * 110.11227 * 0.67528 * 22 5 4 25 25 H 1.09000 * 110.48933 * 135.06160 * 24 22 5 26 26 C 1.53003 * 110.48649 * 257.57616 * 24 22 5 27 27 H 1.08999 * 109.46981 * 296.21346 * 1 2 3 28 28 H 1.08994 * 109.47078 * 56.20940 * 1 2 3 29 29 H 1.08993 * 109.47291 * 176.21281 * 1 2 3 30 30 H 1.08995 * 110.39665 * 148.55247 * 4 2 1 31 31 H 1.09003 * 110.17987 * 26.49569 * 4 2 1 32 32 H 1.09004 * 109.47073 * 29.72093 * 6 5 4 33 33 H 1.09000 * 109.47212 * 149.72176 * 6 5 4 34 34 H 1.08993 * 109.46763 * 294.18120 * 8 7 6 35 35 H 1.08999 * 109.45818 * 54.15277 * 8 7 6 36 36 H 1.08992 * 109.50403 * 299.24538 * 9 8 7 37 37 H 1.08998 * 109.53232 * 179.14219 * 9 8 7 38 38 H 1.09000 * 109.51639 * 182.43579 * 10 9 8 39 39 H 1.08998 * 109.52000 * 62.24900 * 10 9 8 40 40 H 0.97000 * 119.99754 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.46348 * 305.84602 * 21 7 6 42 42 H 1.09003 * 109.46361 * 65.83318 * 21 7 6 43 43 H 1.08994 * 109.47065 * 58.54713 * 26 24 22 44 44 H 1.09007 * 109.47270 * 178.55071 * 26 24 22 45 45 H 1.09005 * 109.46778 * 298.54310 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9182 1.0186 0.0000 4 6 2.0900 -0.8018 -1.1983 5 7 2.2865 -2.1665 -0.6957 6 6 2.4566 -3.3452 -1.5490 7 7 1.1431 -3.9404 -1.8291 8 6 0.6949 -4.7773 -0.7086 9 6 -0.7330 -5.2613 -0.9711 10 6 -0.7633 -6.0630 -2.2753 11 6 -0.2463 -5.1842 -3.4176 12 1 -0.9042 -4.3239 -3.5413 13 6 -0.2174 -5.9834 -4.6949 14 1 0.7160 -6.1330 -5.2172 15 6 -1.3825 -6.5235 -5.1967 16 7 -2.5192 -6.3408 -4.5608 17 14 -1.3466 -7.5147 -6.7796 18 1 0.0445 -7.5724 -7.2959 19 1 -1.8335 -8.8919 -6.5123 20 1 -2.2224 -6.8671 -7.7890 21 6 1.1675 -4.7023 -3.0843 22 6 2.2963 -2.1954 0.6482 23 8 2.4527 -3.1927 1.3205 24 6 2.0834 -0.8031 1.2000 25 1 1.3598 -0.8222 2.0150 26 6 3.4096 -0.2075 1.6769 27 1 -0.3633 0.4539 0.9220 28 1 -0.3633 0.5715 -0.8540 29 1 -0.3633 -1.0253 -0.0679 30 1 3.0399 -0.3803 -1.5267 31 1 1.3725 -0.8017 -2.0189 32 1 2.9290 -3.0503 -2.4860 33 1 3.0851 -4.0753 -1.0392 34 1 1.3574 -5.6371 -0.6098 35 1 0.7173 -4.1940 0.2119 36 1 -1.3985 -4.4023 -1.0564 37 1 -1.0604 -5.8949 -0.1468 38 1 -1.7863 -6.3730 -2.4885 39 1 -0.1280 -6.9432 -2.1766 40 1 -3.3389 -6.7205 -4.9140 41 1 1.5330 -4.0646 -3.8891 42 1 1.8277 -5.5627 -2.9741 43 1 4.1143 -0.1780 0.8460 44 1 3.2415 0.8040 2.0470 45 1 3.8176 -0.8241 2.4778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853524137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:26 Heat of formation + Delta-G solvation = -43.189394 kcal Electronic energy + Delta-G solvation = -23287.540691 eV Core-core repulsion = 20111.145222 eV Total energy + Delta-G solvation = -3176.395469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67920 -38.00502 -36.62090 -34.46678 -32.86951 -31.22062 -30.70267 -29.81159 -26.73324 -26.01507 -24.90653 -23.87939 -21.93791 -21.38945 -20.62101 -19.27353 -18.56631 -16.71209 -16.39260 -15.92970 -15.46170 -14.88729 -14.53039 -14.35633 -14.00251 -13.73958 -13.49800 -13.40877 -13.16710 -12.82241 -12.74040 -12.46654 -12.41109 -12.13188 -11.91375 -11.75140 -11.38143 -11.22078 -11.04656 -10.96273 -10.78393 -10.66684 -10.65255 -10.05447 -9.83865 -9.52718 -9.46962 -9.22348 -8.70507 -8.60759 -8.30681 -7.70644 -5.97271 -4.03712 2.68706 3.14374 3.29855 3.38040 3.41407 4.21208 4.30348 4.40991 4.60389 4.63924 4.83358 5.12487 5.23958 5.28208 5.32939 5.34131 5.49256 5.54513 5.59076 5.68754 5.72542 5.80022 5.84346 5.89512 5.92785 5.97481 6.11308 6.23094 6.33062 6.37661 6.53117 6.59918 6.78014 6.79147 6.94990 7.22628 7.27186 7.41024 7.67884 7.74179 7.79512 8.07717 8.17749 8.32969 8.47872 9.00496 9.60684 11.08654 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.004050 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.811080 B = 6911.192476 C = 7001.702424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.094 0.906 4 C 0.108 3.892 5 N -0.601 5.601 6 C 0.288 3.712 7 N -0.552 5.552 8 C 0.066 3.934 9 C -0.116 4.116 10 C -0.110 4.110 11 C 0.057 3.943 12 H 0.034 0.966 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.072 3.928 22 C 0.522 3.478 23 O -0.535 6.535 24 C -0.124 4.124 25 H 0.103 0.897 26 C -0.133 4.133 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.030 0.970 40 H 0.259 0.741 41 H 0.060 0.940 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 13.992 9.071 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.112 0.888 4 C -0.016 4.016 5 N -0.336 5.336 6 C 0.076 3.924 7 N -0.279 5.279 8 C -0.062 4.062 9 C -0.154 4.154 10 C -0.148 4.148 11 C 0.038 3.962 12 H 0.052 0.948 13 C -0.554 4.554 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.055 4.055 22 C 0.309 3.691 23 O -0.412 6.412 24 C -0.146 4.146 25 H 0.121 0.879 26 C -0.190 4.190 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.377 13.717 9.285 18.562 hybrid contribution 0.444 -1.232 -0.848 1.560 sum 8.822 12.485 8.437 17.461 Atomic orbital electron populations 1.21795 0.93401 1.03100 1.01935 1.22266 0.96937 0.99110 0.93496 0.88822 1.22178 1.00723 0.81254 0.97404 1.48372 1.70899 1.07979 1.06302 1.21756 0.91198 0.85818 0.93600 1.61783 1.25310 1.36236 1.04529 1.22070 0.96855 0.94449 0.92787 1.21669 0.94829 0.99744 0.99130 1.21651 1.03859 0.96980 0.92325 1.18653 0.89354 0.95111 0.93099 0.94821 1.21178 0.93870 1.32904 1.07401 0.92778 1.24936 0.95541 0.96275 0.97079 1.69911 0.98498 1.45347 1.38872 0.86573 0.78001 0.79937 0.83679 1.19863 1.21099 1.21060 1.22285 1.01295 0.94168 0.87763 1.20808 0.75333 0.90495 0.82504 1.90700 1.50250 1.37340 1.62871 1.22060 0.99837 0.93656 0.99027 0.87907 1.21606 0.95063 1.00835 1.01530 0.92366 0.91875 0.91752 0.91448 0.89615 0.89515 0.92654 0.95883 0.91775 0.92410 0.93641 0.89175 0.95154 0.93122 0.92193 0.96031 0.92306 0.91499 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.15 37.16 0.34 -1.04 16 2 C -0.10 -0.87 3.27 -88.88 -0.29 -1.16 16 3 H 0.09 0.60 7.90 -51.93 -0.41 0.19 16 4 C 0.11 1.12 6.91 -3.03 -0.02 1.10 16 5 N -0.60 -8.36 3.14 -175.79 -0.55 -8.91 16 6 C 0.29 4.52 5.78 -63.31 -0.37 4.15 16 7 N -0.55 -10.39 4.75 -238.56 -1.13 -11.52 16 8 C 0.07 1.31 5.28 -3.83 -0.02 1.29 16 9 C -0.12 -2.43 6.09 -26.64 -0.16 -2.59 16 10 C -0.11 -2.67 5.03 -26.61 -0.13 -2.81 16 11 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 12 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 13 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.35 11.37 55.43 0.63 -24.72 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.07 1.51 4.62 -3.83 -0.02 1.49 16 22 C 0.52 7.74 6.59 -10.86 -0.07 7.66 16 23 O -0.53 -10.01 16.16 5.56 0.09 -9.93 16 24 C -0.12 -1.30 3.08 -90.63 -0.28 -1.58 16 25 H 0.10 1.07 7.91 -51.93 -0.41 0.66 16 26 C -0.13 -1.11 9.17 37.16 0.34 -0.77 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.96 7.92 -51.93 -0.41 0.54 16 32 H 0.09 1.19 7.71 -51.93 -0.40 0.79 16 33 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 1.28 5.75 -51.93 -0.30 0.98 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.06 1.20 7.91 -51.93 -0.41 0.79 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -30.55 348.25 -10.12 -40.67 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.10 Total: -1.28 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.28 Total: -5.73 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -1.06 Total: -45.15 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.55 -10.12 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853524137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.521 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds