Wall clock time and date at job start Tue Mar 31 2020 02:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.85927 * 2 1 4 4 C 1.54666 * 111.22376 * 236.21294 * 2 1 3 5 5 N 1.46758 * 105.38094 * 267.58257 * 4 2 1 6 6 C 1.46506 * 124.34868 * 162.85698 * 5 4 2 7 7 N 1.46902 * 109.46684 * 269.72551 * 6 5 4 8 8 C 1.46852 * 110.99542 * 279.20164 * 7 6 5 9 9 C 1.53043 * 109.51867 * 174.16136 * 8 7 6 10 10 C 1.53125 * 109.27376 * 59.18647 * 9 8 7 11 11 C 1.53113 * 109.16045 * 302.34120 * 10 9 8 12 12 H 1.09008 * 109.50557 * 297.71684 * 11 10 9 13 13 C 1.50701 * 109.53565 * 177.61991 * 11 10 9 14 14 H 1.08002 * 119.99842 * 240.17901 * 13 11 10 15 15 C 1.37879 * 120.00239 * 60.17610 * 13 11 10 16 16 N 1.31518 * 119.99618 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00214 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46930 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47062 * 119.99680 * 17 15 13 20 20 H 1.48505 * 109.46860 * 239.99917 * 17 15 13 21 21 C 1.46852 * 110.99522 * 155.00099 * 7 6 5 22 22 C 1.34422 * 111.30529 * 342.58780 * 5 4 2 23 23 O 1.21281 * 124.94496 * 180.65520 * 22 5 4 24 24 C 1.51277 * 110.11227 * 0.67528 * 22 5 4 25 25 H 1.09000 * 110.48933 * 135.06160 * 24 22 5 26 26 C 1.53003 * 110.48649 * 257.57616 * 24 22 5 27 27 H 1.08999 * 109.46981 * 296.21346 * 1 2 3 28 28 H 1.08994 * 109.47078 * 56.20940 * 1 2 3 29 29 H 1.08993 * 109.47291 * 176.21281 * 1 2 3 30 30 H 1.08995 * 110.39665 * 148.55247 * 4 2 1 31 31 H 1.09003 * 110.17987 * 26.49569 * 4 2 1 32 32 H 1.09004 * 109.47073 * 29.72093 * 6 5 4 33 33 H 1.09000 * 109.47212 * 149.72176 * 6 5 4 34 34 H 1.08993 * 109.46763 * 294.18120 * 8 7 6 35 35 H 1.08999 * 109.45818 * 54.15277 * 8 7 6 36 36 H 1.08992 * 109.50403 * 299.24538 * 9 8 7 37 37 H 1.08998 * 109.53232 * 179.14219 * 9 8 7 38 38 H 1.09000 * 109.51639 * 182.43579 * 10 9 8 39 39 H 1.08998 * 109.52000 * 62.24900 * 10 9 8 40 40 H 0.97000 * 119.99754 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.46348 * 305.84602 * 21 7 6 42 42 H 1.09003 * 109.46361 * 65.83318 * 21 7 6 43 43 H 1.08994 * 109.47065 * 58.54713 * 26 24 22 44 44 H 1.09007 * 109.47270 * 178.55071 * 26 24 22 45 45 H 1.09005 * 109.46778 * 298.54310 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9182 1.0186 0.0000 4 6 2.0900 -0.8018 -1.1983 5 7 2.2865 -2.1665 -0.6957 6 6 2.4566 -3.3452 -1.5490 7 7 1.1431 -3.9404 -1.8291 8 6 0.6949 -4.7773 -0.7086 9 6 -0.7330 -5.2613 -0.9711 10 6 -0.7633 -6.0630 -2.2753 11 6 -0.2463 -5.1842 -3.4176 12 1 -0.9042 -4.3239 -3.5413 13 6 -0.2174 -5.9834 -4.6949 14 1 0.7160 -6.1330 -5.2172 15 6 -1.3825 -6.5235 -5.1967 16 7 -2.5192 -6.3408 -4.5608 17 14 -1.3466 -7.5147 -6.7796 18 1 0.0445 -7.5724 -7.2959 19 1 -1.8335 -8.8919 -6.5123 20 1 -2.2224 -6.8671 -7.7890 21 6 1.1675 -4.7023 -3.0843 22 6 2.2963 -2.1954 0.6482 23 8 2.4527 -3.1927 1.3205 24 6 2.0834 -0.8031 1.2000 25 1 1.3598 -0.8222 2.0150 26 6 3.4096 -0.2075 1.6769 27 1 -0.3633 0.4539 0.9220 28 1 -0.3633 0.5715 -0.8540 29 1 -0.3633 -1.0253 -0.0679 30 1 3.0399 -0.3803 -1.5267 31 1 1.3725 -0.8017 -2.0189 32 1 2.9290 -3.0503 -2.4860 33 1 3.0851 -4.0753 -1.0392 34 1 1.3574 -5.6371 -0.6098 35 1 0.7173 -4.1940 0.2119 36 1 -1.3985 -4.4023 -1.0564 37 1 -1.0604 -5.8949 -0.1468 38 1 -1.7863 -6.3730 -2.4885 39 1 -0.1280 -6.9432 -2.1766 40 1 -3.3389 -6.7205 -4.9140 41 1 1.5330 -4.0646 -3.8891 42 1 1.8277 -5.5627 -2.9741 43 1 4.1143 -0.1780 0.8460 44 1 3.2415 0.8040 2.0470 45 1 3.8176 -0.8241 2.4778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853524137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:25 Heat of formation + Delta-G solvation = -61.731753 kcal Electronic energy + Delta-G solvation = -23288.344748 eV Core-core repulsion = 20111.145222 eV Total energy + Delta-G solvation = -3177.199526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73351 -39.65739 -37.73735 -35.98424 -34.50760 -32.80088 -31.71137 -31.48184 -27.86325 -27.08927 -26.87088 -24.95362 -23.55175 -23.05124 -21.54027 -20.50247 -20.28981 -18.50790 -17.66463 -17.31079 -16.58597 -16.50776 -15.98683 -15.76225 -15.16281 -15.06350 -14.85181 -14.61238 -14.52233 -14.26461 -14.17282 -13.78555 -13.57919 -13.42590 -13.13363 -12.88566 -12.84820 -12.61660 -12.56626 -12.49287 -12.12690 -11.91041 -11.80202 -11.77474 -11.54369 -11.45517 -11.02352 -10.70507 -10.64331 -10.40449 -9.85648 -9.25953 -8.08069 -6.22357 1.41136 1.43003 1.53796 1.55609 2.06761 2.43614 3.08440 3.19451 3.35570 3.49760 3.88738 3.96816 4.08260 4.10412 4.19493 4.29987 4.40743 4.45297 4.55291 4.57301 4.61228 4.64631 4.72927 4.82161 4.87941 4.89787 4.95503 5.00056 5.01097 5.10692 5.11544 5.18737 5.28395 5.30557 5.45403 5.47799 5.51628 5.62652 5.92594 6.03237 6.11147 6.18129 6.27587 6.42772 6.90091 7.19184 7.45871 8.97016 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.004050 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.811080 B = 6911.192476 C = 7001.702424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.133 0.867 4 C 0.101 3.899 5 N -0.604 5.604 6 C 0.288 3.712 7 N -0.554 5.554 8 C 0.078 3.922 9 C -0.107 4.107 10 C -0.102 4.102 11 C 0.056 3.944 12 H 0.000 1.000 13 C -0.534 4.534 14 H 0.056 0.944 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.956 3.044 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.280 1.280 21 C 0.086 3.914 22 C 0.508 3.492 23 O -0.584 6.584 24 C -0.118 4.118 25 H 0.102 0.898 26 C -0.127 4.127 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.044 0.956 34 H 0.016 0.984 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.260 0.740 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.177 16.064 8.767 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.151 0.849 4 C -0.020 4.020 5 N -0.336 5.336 6 C 0.076 3.924 7 N -0.281 5.281 8 C -0.050 4.050 9 C -0.145 4.145 10 C -0.140 4.140 11 C 0.037 3.963 12 H 0.018 0.982 13 C -0.572 4.572 14 H 0.074 0.926 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.206 1.206 21 C -0.042 4.042 22 C 0.297 3.703 23 O -0.464 6.464 24 C -0.139 4.139 25 H 0.121 0.879 26 C -0.185 4.185 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.773 15.834 8.971 20.657 hybrid contribution -0.012 -1.854 -0.739 1.996 sum 9.761 13.980 8.232 18.933 Atomic orbital electron populations 1.21794 0.94215 1.00960 1.03179 1.22320 0.96130 1.00503 0.91538 0.84881 1.22481 1.02269 0.79509 0.97788 1.48492 1.70184 1.08811 1.06147 1.21753 0.89286 0.86372 0.94949 1.61753 1.27590 1.35437 1.03353 1.21887 0.95638 0.94295 0.93158 1.21557 0.95819 0.99175 0.97923 1.21466 1.01639 0.96995 0.93917 1.18563 0.91171 0.93722 0.92859 0.98194 1.21534 0.94046 1.33252 1.08379 0.92612 1.25733 0.95205 0.97306 1.00266 1.70052 0.99041 1.46173 1.40338 0.85545 0.78324 0.78238 0.79761 1.18942 1.20942 1.20578 1.21988 0.98454 0.94529 0.89213 1.21687 0.74232 0.91769 0.82656 1.90663 1.52390 1.39430 1.63926 1.22098 1.01256 0.91034 0.99513 0.87944 1.21616 0.93633 1.01917 1.01325 0.90894 0.90954 0.95485 0.88408 0.90390 0.87081 0.93828 0.96584 0.91773 0.93211 0.92172 0.92187 0.96008 0.93111 0.90878 0.96369 0.91664 0.88504 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.15 71.98 0.66 -1.80 16 2 C -0.09 -1.23 3.27 -9.67 -0.03 -1.26 16 3 H 0.13 0.97 7.90 -2.39 -0.02 0.95 16 4 C 0.10 1.82 6.91 86.90 0.60 2.42 16 5 N -0.60 -15.99 3.14 -828.66 -2.60 -18.59 16 6 C 0.29 8.79 5.78 170.80 0.99 9.78 16 7 N -0.55 -20.86 4.75 -908.66 -4.32 -25.18 16 8 C 0.08 3.14 5.28 86.33 0.46 3.59 16 9 C -0.11 -4.60 6.09 30.65 0.19 -4.41 16 10 C -0.10 -5.12 5.03 30.67 0.15 -4.96 16 11 C 0.06 2.86 2.26 -11.49 -0.03 2.83 16 12 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 13 C -0.53 -29.44 8.56 25.60 0.22 -29.22 16 14 H 0.06 2.99 7.74 -2.91 -0.02 2.96 16 15 C 0.01 0.76 5.30 84.65 0.45 1.21 16 16 N -0.92 -53.58 11.37 21.45 0.24 -53.34 16 17 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 C 0.09 3.59 4.62 86.33 0.40 3.99 16 22 C 0.51 14.69 6.59 87.90 0.58 15.27 16 23 O -0.58 -22.17 16.16 -3.03 -0.05 -22.22 16 24 C -0.12 -2.20 3.08 -10.80 -0.03 -2.23 16 25 H 0.10 1.95 7.91 -2.39 -0.02 1.93 16 26 C -0.13 -1.73 9.17 71.98 0.66 -1.07 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.56 7.92 -2.39 -0.02 1.54 16 32 H 0.11 2.83 7.71 -2.38 -0.02 2.82 16 33 H 0.04 1.45 7.70 -2.39 -0.02 1.43 16 34 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 2.61 5.75 -2.39 -0.01 2.59 16 36 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 38 H 0.06 3.37 6.17 -2.39 -0.01 3.36 16 39 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.07 2.86 7.91 -2.39 -0.02 2.84 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -68.56 348.25 1.49 -67.07 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.93 Total: 12.44 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 5.26 Total: -5.87 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -6.68 Total: -97.11 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -68.56 1.49 -67.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853524137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.334 kcal (2) G-P(sol) polarization free energy of solvation -68.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds