Wall clock time and date at job start Tue Mar 31 2020 02:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.34780 * 119.99910 * 85.00011 * 4 2 1 6 6 O 1.21590 * 119.99633 * 0.02562 * 5 4 2 7 7 N 1.34768 * 119.99810 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99756 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47116 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47209 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99910 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00336 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99715 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00436 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47030 * 59.99750 * 14 12 10 16 16 H 1.48497 * 109.47307 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47026 * 300.00097 * 14 12 10 18 18 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 19 19 C 1.52303 * 115.91839 * 231.71371 * 18 2 1 20 20 C 1.52071 * 115.93076 * 300.00427 * 18 2 1 21 21 H 1.09000 * 117.25618 * 359.53239 * 20 18 2 22 22 C 1.52710 * 120.52050 * 149.25541 * 20 18 2 23 23 C 1.52870 * 110.15597 * 338.52901 * 22 20 18 24 24 C 1.53299 * 108.58184 * 54.52221 * 23 22 20 25 25 C 1.52080 * 114.63634 * 86.61855 * 18 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 30 30 H 0.96998 * 120.00474 * 359.97438 * 7 5 4 31 31 H 1.09001 * 109.47568 * 299.99679 * 8 7 5 32 32 H 1.08996 * 109.47546 * 59.99842 * 8 7 5 33 33 H 1.09001 * 109.47109 * 299.99423 * 9 8 7 34 34 H 1.08996 * 109.47620 * 59.99967 * 9 8 7 35 35 H 0.96998 * 119.99634 * 179.97438 * 13 12 10 36 36 H 1.09002 * 117.53898 * 213.89932 * 19 18 2 37 37 H 1.08994 * 117.53905 * 359.14933 * 19 18 2 38 38 H 1.09003 * 109.35706 * 98.74160 * 22 20 18 39 39 H 1.09000 * 109.35811 * 218.45519 * 22 20 18 40 40 H 1.09008 * 109.61816 * 174.25348 * 23 22 20 41 41 H 1.08997 * 109.62057 * 294.79009 * 23 22 20 42 42 H 1.08999 * 109.61483 * 45.29169 * 24 23 22 43 43 H 1.08999 * 109.61490 * 165.82238 * 24 23 22 44 44 H 1.09003 * 109.26592 * 314.63866 * 25 18 2 45 45 H 1.09000 * 109.26589 * 74.11022 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1616 -2.4116 7 7 2.5960 -0.6538 -3.4576 8 6 2.7364 0.0772 -4.7194 9 6 3.2608 -0.8691 -5.8013 10 6 3.4047 -0.1174 -7.0995 11 1 3.1475 0.9305 -7.1481 12 6 3.8648 -0.7672 -8.2251 13 7 4.1785 -2.0430 -8.1658 14 14 4.0439 0.1648 -9.8341 15 1 4.9990 1.2873 -9.6523 16 1 4.5527 -0.7537 -10.8842 17 1 2.7216 0.7016 -10.2450 18 6 2.0400 -0.7212 1.2493 19 6 3.0621 0.0377 2.0853 20 6 1.6169 -0.1229 2.5818 21 1 0.9943 0.7713 2.5523 22 6 1.4241 -1.0149 3.8062 23 6 1.1851 -2.4610 3.3719 24 6 2.3389 -2.8944 2.4603 25 6 2.1745 -2.2287 1.1005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 2.2490 -1.6317 -1.1525 30 1 2.8267 -1.5949 -3.4140 31 1 1.7661 0.4719 -5.0207 32 1 3.4381 0.9006 -4.5862 33 1 4.2313 -1.2634 -5.4999 34 1 2.5595 -1.6927 -5.9347 35 1 4.5018 -2.5003 -8.9578 36 1 3.8350 -0.5446 2.5871 37 1 3.3679 1.0234 1.7348 38 1 2.3159 -0.9681 4.4313 39 1 0.5642 -0.6644 4.3768 40 1 1.1504 -3.1059 4.2501 41 1 0.2433 -2.5288 2.8275 42 1 3.2875 -2.5818 2.8969 43 1 2.3262 -3.9781 2.3440 44 1 1.2814 -2.6234 0.6161 45 1 3.0458 -2.4531 0.4853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868492388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:58 Heat of formation + Delta-G solvation = -37.629848 kcal Electronic energy + Delta-G solvation = -22066.194581 eV Core-core repulsion = 18890.040192 eV Total energy + Delta-G solvation = -3176.154389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.67128 -39.18552 -35.52421 -34.52633 -33.33579 -32.76457 -31.03086 -30.22076 -28.89149 -25.12323 -24.81451 -23.80786 -21.67941 -21.37335 -20.78908 -20.27894 -18.38931 -18.01422 -16.61886 -16.29204 -15.20777 -15.08017 -14.77048 -14.52485 -14.39381 -14.20690 -14.06906 -13.53873 -13.47455 -13.40453 -12.97493 -12.57233 -12.33931 -12.26290 -12.12229 -11.63780 -11.25236 -11.16760 -11.14813 -11.06138 -10.99005 -10.62926 -10.43057 -10.28188 -10.06009 -9.85185 -9.79060 -9.50891 -9.24227 -8.90634 -8.45211 -8.19593 -6.06908 -4.09425 3.04486 3.33098 3.36631 3.40308 3.49291 3.67804 4.25491 4.39925 4.45361 4.45728 4.60655 4.70900 4.80929 4.94278 4.96283 5.15095 5.24723 5.30085 5.33994 5.39543 5.44467 5.52077 5.59859 5.63463 5.69634 5.82538 5.84189 5.92043 5.93962 5.96950 6.04901 6.11149 6.26856 6.35451 6.43950 6.74804 6.82336 7.06026 7.31733 7.60387 7.66645 7.92527 8.29261 8.50439 8.95665 9.07296 9.55100 11.04783 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038616 B = 0.002798 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.907951 B =10006.481759 C =10365.989560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.196 3.804 3 H 0.086 0.914 4 N -0.747 5.747 5 C 0.699 3.301 6 O -0.599 6.599 7 N -0.740 5.740 8 C 0.141 3.859 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.114 4.114 19 C -0.176 4.176 20 C -0.136 4.136 21 H 0.104 0.896 22 C -0.088 4.088 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.086 4.086 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.393 0.607 30 H 0.392 0.608 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 -2.612 24.969 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.091 3.909 3 H 0.104 0.896 4 N -0.404 5.404 5 C 0.399 3.601 6 O -0.479 6.479 7 N -0.393 5.393 8 C 0.018 3.982 9 C -0.024 4.024 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.115 4.115 19 C -0.213 4.213 20 C -0.154 4.154 21 H 0.122 0.878 22 C -0.125 4.125 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.124 4.124 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.228 0.772 30 H 0.225 0.775 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.268 -1.638 24.757 25.364 hybrid contribution 0.397 -0.444 -0.946 1.118 sum -4.871 -2.082 23.811 24.393 Atomic orbital electron populations 1.22168 0.95456 1.01948 1.02249 1.20269 0.93459 0.96013 0.81182 0.89565 1.45256 1.72666 1.13564 1.08905 1.16077 0.78511 0.85186 0.80375 1.90876 1.57684 1.14534 1.84758 1.45528 1.69921 1.13870 1.09977 1.21570 1.00316 0.95565 0.80771 1.19315 0.96541 0.94618 0.91936 1.21026 1.44270 0.96631 0.94021 0.92282 1.24996 0.95215 0.94925 0.99168 1.69951 1.44584 1.09191 1.29689 0.86569 0.78609 0.79588 0.82747 1.20104 1.21269 1.20112 1.21222 1.03724 0.94984 0.91531 1.23330 0.92353 1.01664 1.03957 1.22277 0.98192 1.01089 0.93870 0.87796 1.21039 1.01710 0.94325 0.95430 1.21559 0.98895 0.95928 0.99275 1.21483 0.98840 0.99934 0.95489 1.20708 1.02172 0.91736 0.97758 0.92658 0.91860 0.91997 0.77244 0.77498 0.92849 0.92864 0.96003 0.96007 0.92829 0.88706 0.88720 0.91693 0.91655 0.92021 0.91582 0.91919 0.91613 0.91152 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.31 37.16 0.35 -1.45 16 2 C 0.20 2.33 2.57 -67.93 -0.17 2.15 16 3 H 0.09 1.21 7.20 -51.93 -0.37 0.84 16 4 N -0.75 -9.91 5.02 -58.68 -0.29 -10.20 16 5 C 0.70 12.59 8.53 -86.92 -0.74 11.85 16 6 O -0.60 -13.15 16.01 5.29 0.08 -13.07 16 7 N -0.74 -13.48 5.56 -65.22 -0.36 -13.84 16 8 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 11 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 14 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.11 -1.04 1.91 -155.81 -0.30 -1.33 16 19 C -0.18 -1.55 9.23 -26.75 -0.25 -1.80 16 20 C -0.14 -1.09 5.27 -90.90 -0.48 -1.56 16 21 H 0.10 0.83 7.47 -51.93 -0.39 0.44 16 22 C -0.09 -0.58 5.83 -26.95 -0.16 -0.74 16 23 C -0.12 -0.77 5.93 -26.64 -0.16 -0.93 16 24 C -0.12 -0.82 5.67 -26.94 -0.15 -0.97 16 25 C -0.09 -0.69 4.11 -27.56 -0.11 -0.80 16 26 H 0.05 0.57 8.04 -51.93 -0.42 0.15 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.59 7.13 -51.93 -0.37 0.22 16 29 H 0.39 4.26 6.56 -40.82 -0.27 3.99 16 30 H 0.39 6.16 8.49 -40.82 -0.35 5.81 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.09 0.77 7.26 -51.93 -0.38 0.40 16 37 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 38 H 0.06 0.42 8.06 -51.93 -0.42 0.00 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 41 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 42 H 0.06 0.44 7.11 -51.93 -0.37 0.07 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.56 7.99 -51.93 -0.42 0.15 16 45 H 0.07 0.56 7.46 -51.93 -0.39 0.17 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -31.89 354.31 -10.15 -42.04 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.88 Total: 4.51 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.75 Total: -5.72 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.08 Total: -49.67 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.89 -10.15 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868492388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.412 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds