Wall clock time and date at job start Tue Mar 31 2020 02:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.34780 * 119.99910 * 85.00011 * 4 2 1 6 6 O 1.21590 * 119.99633 * 0.02562 * 5 4 2 7 7 N 1.34768 * 119.99810 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99756 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47116 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47209 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99910 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00336 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99715 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00436 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47030 * 59.99750 * 14 12 10 16 16 H 1.48497 * 109.47307 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47026 * 300.00097 * 14 12 10 18 18 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 19 19 C 1.52303 * 115.91839 * 231.71371 * 18 2 1 20 20 C 1.52071 * 115.93076 * 300.00427 * 18 2 1 21 21 H 1.09000 * 117.25618 * 359.53239 * 20 18 2 22 22 C 1.52710 * 120.52050 * 149.25541 * 20 18 2 23 23 C 1.52870 * 110.15597 * 338.52901 * 22 20 18 24 24 C 1.53299 * 108.58184 * 54.52221 * 23 22 20 25 25 C 1.52080 * 114.63634 * 86.61855 * 18 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 30 30 H 0.96998 * 120.00474 * 359.97438 * 7 5 4 31 31 H 1.09001 * 109.47568 * 299.99679 * 8 7 5 32 32 H 1.08996 * 109.47546 * 59.99842 * 8 7 5 33 33 H 1.09001 * 109.47109 * 299.99423 * 9 8 7 34 34 H 1.08996 * 109.47620 * 59.99967 * 9 8 7 35 35 H 0.96998 * 119.99634 * 179.97438 * 13 12 10 36 36 H 1.09002 * 117.53898 * 213.89932 * 19 18 2 37 37 H 1.08994 * 117.53905 * 359.14933 * 19 18 2 38 38 H 1.09003 * 109.35706 * 98.74160 * 22 20 18 39 39 H 1.09000 * 109.35811 * 218.45519 * 22 20 18 40 40 H 1.09008 * 109.61816 * 174.25348 * 23 22 20 41 41 H 1.08997 * 109.62057 * 294.79009 * 23 22 20 42 42 H 1.08999 * 109.61483 * 45.29169 * 24 23 22 43 43 H 1.08999 * 109.61490 * 165.82238 * 24 23 22 44 44 H 1.09003 * 109.26592 * 314.63866 * 25 18 2 45 45 H 1.09000 * 109.26589 * 74.11022 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1616 -2.4116 7 7 2.5960 -0.6538 -3.4576 8 6 2.7364 0.0772 -4.7194 9 6 3.2608 -0.8691 -5.8013 10 6 3.4047 -0.1174 -7.0995 11 1 3.1475 0.9305 -7.1481 12 6 3.8648 -0.7672 -8.2251 13 7 4.1785 -2.0430 -8.1658 14 14 4.0439 0.1648 -9.8341 15 1 4.9990 1.2873 -9.6523 16 1 4.5527 -0.7537 -10.8842 17 1 2.7216 0.7016 -10.2450 18 6 2.0400 -0.7212 1.2493 19 6 3.0621 0.0377 2.0853 20 6 1.6169 -0.1229 2.5818 21 1 0.9943 0.7713 2.5523 22 6 1.4241 -1.0149 3.8062 23 6 1.1851 -2.4610 3.3719 24 6 2.3389 -2.8944 2.4603 25 6 2.1745 -2.2287 1.1005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 2.2490 -1.6317 -1.1525 30 1 2.8267 -1.5949 -3.4140 31 1 1.7661 0.4719 -5.0207 32 1 3.4381 0.9006 -4.5862 33 1 4.2313 -1.2634 -5.4999 34 1 2.5595 -1.6927 -5.9347 35 1 4.5018 -2.5003 -8.9578 36 1 3.8350 -0.5446 2.5871 37 1 3.3679 1.0234 1.7348 38 1 2.3159 -0.9681 4.4313 39 1 0.5642 -0.6644 4.3768 40 1 1.1504 -3.1059 4.2501 41 1 0.2433 -2.5288 2.8275 42 1 3.2875 -2.5818 2.8969 43 1 2.3262 -3.9781 2.3440 44 1 1.2814 -2.6234 0.6161 45 1 3.0458 -2.4531 0.4853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868492388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:58 Heat of formation + Delta-G solvation = -57.042116 kcal Electronic energy + Delta-G solvation = -22067.036360 eV Core-core repulsion = 18890.040192 eV Total energy + Delta-G solvation = -3176.996168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59517 -40.43911 -36.87527 -36.02537 -34.83726 -34.03036 -32.09435 -31.30360 -30.37921 -26.75127 -25.67114 -24.84721 -22.98289 -22.33566 -22.10420 -21.45788 -19.55644 -18.90275 -18.42159 -17.66717 -16.61889 -16.50685 -16.34084 -15.63509 -15.31303 -15.11226 -15.04182 -14.85485 -14.74982 -14.28497 -14.13930 -14.02856 -13.42695 -13.23377 -13.18086 -12.91937 -12.78476 -12.53086 -12.45691 -12.21877 -11.94724 -11.77946 -11.68532 -11.62270 -11.50796 -11.21360 -11.09809 -10.71474 -10.59639 -10.49719 -10.23022 -9.69553 -8.23693 -6.34059 1.41912 1.44544 1.52309 1.75504 2.17956 2.41579 2.76191 3.10990 3.38109 3.51475 3.78805 3.84078 3.92073 4.15154 4.29439 4.33288 4.42612 4.48242 4.48468 4.52652 4.58892 4.70888 4.78218 4.79933 4.86621 4.90893 4.98789 5.03676 5.08339 5.18051 5.26256 5.30318 5.32387 5.35669 5.40050 5.45511 5.52081 5.56536 5.59693 5.63253 5.79344 6.05995 6.17661 6.78818 7.14014 7.35167 7.61861 8.88109 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038616 B = 0.002798 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.907951 B =10006.481759 C =10365.989560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.194 3.806 3 H 0.061 0.939 4 N -0.727 5.727 5 C 0.698 3.302 6 O -0.640 6.640 7 N -0.734 5.734 8 C 0.161 3.839 9 C 0.025 3.975 10 C -0.548 4.548 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.965 3.035 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.115 4.115 19 C -0.182 4.182 20 C -0.124 4.124 21 H 0.104 0.896 22 C -0.086 4.086 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.087 4.087 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.408 0.592 30 H 0.406 0.594 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.008 0.992 34 H 0.009 0.991 35 H 0.266 0.734 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 -3.238 26.120 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.089 3.911 3 H 0.079 0.921 4 N -0.384 5.384 5 C 0.397 3.603 6 O -0.522 6.522 7 N -0.389 5.389 8 C 0.037 3.963 9 C -0.012 4.012 10 C -0.586 4.586 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.789 3.211 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.193 1.193 18 C -0.116 4.116 19 C -0.219 4.219 20 C -0.143 4.143 21 H 0.122 0.878 22 C -0.124 4.124 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.124 4.124 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.245 0.755 30 H 0.241 0.759 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.513 -2.310 25.958 26.638 hybrid contribution 0.467 -0.257 -1.236 1.346 sum -5.046 -2.566 24.723 25.363 Atomic orbital electron populations 1.22103 0.94713 1.02607 1.01740 1.20374 0.94016 0.95076 0.81626 0.92089 1.45123 1.71308 1.14121 1.07802 1.16187 0.78164 0.84745 0.81164 1.90849 1.59375 1.16491 1.85502 1.45220 1.70236 1.14362 1.09067 1.21057 0.99080 0.94631 0.81547 1.19113 0.95488 0.94430 0.92201 1.21443 1.44665 0.97005 0.95526 0.92337 1.25871 0.94639 0.95823 1.02802 1.70054 1.45080 1.10603 1.30868 0.85499 0.78895 0.78394 0.78266 1.19350 1.20505 1.19343 1.21123 1.04394 0.95517 0.90562 1.23356 0.93170 1.01175 1.04188 1.22365 0.97287 1.01056 0.93593 0.87834 1.21071 1.02441 0.94175 0.94687 1.21558 0.98474 0.95885 0.99605 1.21474 0.99045 1.00310 0.94667 1.20735 1.02211 0.90745 0.98755 0.91335 0.94778 0.90094 0.75494 0.75887 0.93939 0.93989 0.97321 0.97298 0.92517 0.87780 0.89930 0.91146 0.90678 0.90843 0.91870 0.91926 0.90772 0.90930 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.31 71.98 0.67 -2.66 16 2 C 0.19 4.53 2.57 44.99 0.12 4.64 16 3 H 0.06 1.76 7.20 -2.39 -0.02 1.74 16 4 N -0.73 -18.93 5.02 -457.82 -2.30 -21.23 16 5 C 0.70 25.31 8.53 179.06 1.53 26.84 16 6 O -0.64 -28.74 16.01 -4.00 -0.06 -28.80 16 7 N -0.73 -26.88 5.56 -478.54 -2.66 -29.54 16 8 C 0.16 7.24 5.61 86.38 0.48 7.72 16 9 C 0.03 1.30 5.09 29.85 0.15 1.45 16 10 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16 11 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 12 C 0.01 0.42 5.46 84.65 0.46 0.88 16 13 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 14 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 C -0.12 -1.94 1.91 -53.02 -0.10 -2.04 16 19 C -0.18 -3.02 9.23 30.58 0.28 -2.73 16 20 C -0.12 -1.77 5.27 -10.98 -0.06 -1.83 16 21 H 0.10 1.49 7.47 -2.39 -0.02 1.47 16 22 C -0.09 -0.92 5.83 30.45 0.18 -0.75 16 23 C -0.12 -1.20 5.93 30.65 0.18 -1.02 16 24 C -0.12 -1.32 5.67 30.46 0.17 -1.14 16 25 C -0.09 -1.22 4.11 30.06 0.12 -1.09 16 26 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.43 7.13 -2.38 -0.02 1.42 16 29 H 0.41 8.33 6.56 -92.71 -0.61 7.72 16 30 H 0.41 12.60 8.49 -92.71 -0.79 11.81 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.10 1.53 7.26 -2.39 -0.02 1.51 16 37 H 0.08 1.57 7.94 -2.39 -0.02 1.55 16 38 H 0.07 0.71 8.06 -2.39 -0.02 0.69 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.06 0.70 8.06 -2.39 -0.02 0.68 16 42 H 0.06 0.72 7.11 -2.39 -0.02 0.70 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.99 7.99 -2.39 -0.02 0.97 16 45 H 0.07 0.96 7.46 -2.39 -0.02 0.94 16 Total: -1.00 -68.42 354.31 1.29 -67.13 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.42 Total: 23.43 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 4.42 Total: -2.60 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -4.67 Total: -105.20 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.06 Total: -28.80 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.42 1.29 -67.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868492388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.091 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds