Wall clock time and date at job start Tue Mar 31 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50693 * 120.00254 * 2 1 4 4 C 1.53001 * 109.47543 * 124.99562 * 3 2 1 5 5 C 1.53001 * 109.47520 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47274 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99838 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99960 * 179.97438 * 6 5 4 9 9 C 1.46965 * 120.59377 * 179.97438 * 8 6 5 10 10 C 1.53364 * 108.63660 * 235.20474 * 9 8 6 11 11 H 1.09000 * 109.61163 * 190.82939 * 10 9 8 12 12 C 1.53003 * 109.61129 * 70.31946 * 10 9 8 13 13 N 1.46959 * 108.63726 * 310.57575 * 10 9 8 14 14 C 1.36938 * 120.59910 * 235.20221 * 13 10 9 15 15 H 1.08001 * 119.99334 * 52.26084 * 14 13 10 16 16 C 1.38804 * 120.00210 * 232.25957 * 14 13 10 17 17 N 1.31622 * 119.99994 * 203.80477 * 16 14 13 18 18 Si 1.86801 * 119.99922 * 23.81366 * 16 14 13 19 19 H 1.48496 * 109.47309 * 95.19241 * 18 16 14 20 20 H 1.48505 * 109.46744 * 215.19261 * 18 16 14 21 21 H 1.48497 * 109.47031 * 335.19026 * 18 16 14 22 22 C 1.46966 * 118.80956 * 55.47604 * 13 10 9 23 23 H 1.09002 * 109.61339 * 64.27004 * 22 13 10 24 24 C 1.53001 * 109.61169 * 184.77870 * 22 13 10 25 25 C 1.46959 * 120.59606 * 359.97438 * 8 6 5 26 26 H 1.08009 * 119.99972 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.00227 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99751 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47147 * 4.99854 * 3 2 1 30 30 H 1.09002 * 109.47416 * 244.99591 * 3 2 1 31 31 H 1.09010 * 109.46885 * 60.00094 * 4 3 2 32 32 H 1.09002 * 109.46788 * 300.00414 * 4 3 2 33 33 H 1.08999 * 109.46658 * 59.99826 * 5 4 3 34 34 H 1.08997 * 109.46837 * 299.99956 * 5 4 3 35 35 H 1.09001 * 109.61229 * 115.45539 * 9 8 6 36 36 H 1.09007 * 109.75287 * 355.03846 * 9 8 6 37 37 H 1.08999 * 109.46840 * 300.86069 * 12 10 9 38 38 H 1.09007 * 109.46622 * 60.85251 * 12 10 9 39 39 H 1.08996 * 109.47363 * 180.85132 * 12 10 9 40 40 H 0.97002 * 119.99521 * 180.02562 * 17 16 14 41 41 H 1.09008 * 109.47061 * 50.90929 * 24 22 13 42 42 H 1.09000 * 109.47249 * 170.91084 * 24 22 13 43 43 H 1.09002 * 109.47013 * 290.91362 * 24 22 13 44 44 H 1.09001 * 109.61397 * 244.54214 * 25 8 6 45 45 H 1.09004 * 109.60840 * 4.88312 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.7995 2.6584 1.1820 6 6 4.7568 2.6857 2.3455 7 8 4.8216 1.7382 3.1000 8 7 5.5418 3.7625 2.5472 9 6 6.4796 3.8033 3.6780 10 6 6.1940 5.0620 4.5064 11 1 6.9938 5.2120 5.2315 12 6 4.8581 4.9047 5.2355 13 7 6.1278 6.2163 3.5992 14 6 6.9253 7.3105 3.8041 15 1 7.9917 7.1868 3.9221 16 6 6.3631 8.5784 3.8601 17 7 7.0973 9.6364 3.5880 18 14 4.5647 8.7831 4.3219 19 1 4.4557 9.0616 5.7764 20 1 3.9828 9.9146 3.5562 21 1 3.8260 7.5358 4.0000 22 6 5.1860 6.1778 2.4717 23 1 4.1641 6.1434 2.8495 24 6 5.3741 7.4230 1.6028 25 6 5.4753 4.9170 1.6403 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3586 2.1315 0.0895 30 1 2.6213 1.4025 -0.9313 31 1 3.7399 0.5065 1.0921 32 1 2.4771 1.2356 2.1130 33 1 3.0943 3.4846 1.2717 34 1 4.3573 2.7562 0.2507 35 1 7.5028 3.8361 3.3037 36 1 6.3458 2.9180 4.2997 37 1 4.0628 4.7474 4.5068 38 1 4.9097 4.0481 5.9076 39 1 4.6501 5.8064 5.8115 40 1 6.7044 10.5224 3.6275 41 1 6.4293 7.5366 1.3542 42 1 4.7941 7.3173 0.6859 43 1 5.0329 8.3023 2.1492 44 1 6.4268 5.0293 1.1205 45 1 4.6771 4.7657 0.9135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880456830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:20 Heat of formation + Delta-G solvation = 3.240043 kcal Electronic energy + Delta-G solvation = -23229.675030 eV Core-core repulsion = 20055.292892 eV Total energy + Delta-G solvation = -3174.382138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.92908 -37.68244 -36.06256 -34.18049 -33.18543 -32.19060 -31.58962 -28.47873 -27.74574 -26.23559 -25.47467 -23.35359 -22.25979 -21.10204 -20.07294 -19.36474 -18.43788 -17.08900 -16.35270 -15.93908 -15.75633 -15.13275 -15.02860 -14.58540 -14.30624 -13.68820 -13.51512 -13.31134 -13.26301 -12.76640 -12.43226 -12.31074 -12.19528 -11.89624 -11.76959 -11.56500 -11.51636 -11.35464 -10.98853 -10.91137 -10.78708 -10.71610 -10.58015 -10.19738 -10.00823 -9.98072 -9.60435 -9.53110 -9.33501 -8.60171 -8.17057 -6.55749 -6.12382 -3.66107 2.08372 2.92831 3.29757 3.36564 3.41975 3.47482 4.43574 4.58078 4.72479 4.82239 4.85157 5.06961 5.16890 5.17714 5.35137 5.41068 5.50464 5.55192 5.64037 5.65500 5.68773 5.74211 5.88244 5.94978 6.05554 6.07126 6.17188 6.21438 6.24819 6.29653 6.37355 6.43447 6.45027 6.54323 6.57741 6.66673 6.80194 6.92377 7.03246 7.28137 7.81598 8.01354 8.43726 8.49931 8.94501 9.60067 10.14829 11.00879 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024345 B = 0.004496 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.873253 B = 6226.144681 C = 6611.488815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.097 4.097 4 C -0.097 4.097 5 C -0.140 4.140 6 C 0.509 3.491 7 O -0.557 6.557 8 N -0.598 5.598 9 C 0.102 3.898 10 C 0.150 3.850 11 H 0.082 0.918 12 C -0.157 4.157 13 N -0.592 5.592 14 C -0.282 4.282 15 H 0.071 0.929 16 C 0.061 3.939 17 N -0.888 5.888 18 Si 0.863 3.137 19 H -0.294 1.294 20 H -0.297 1.297 21 H -0.256 1.256 22 C 0.151 3.849 23 H 0.038 0.962 24 C -0.134 4.134 25 C 0.093 3.907 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 -12.893 -7.444 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.166 4.166 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.180 4.180 6 C 0.298 3.702 7 O -0.436 6.436 8 N -0.329 5.329 9 C -0.022 4.022 10 C 0.043 3.957 11 H 0.100 0.900 12 C -0.216 4.216 13 N -0.316 5.316 14 C -0.410 4.410 15 H 0.088 0.912 16 C -0.142 4.142 17 N -0.527 5.527 18 Si 0.692 3.308 19 H -0.222 1.222 20 H -0.224 1.224 21 H -0.180 1.180 22 C 0.044 3.956 23 H 0.056 0.944 24 C -0.192 4.192 25 C -0.031 4.031 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.450 -13.166 -7.072 17.168 hybrid contribution -1.069 0.502 0.300 1.219 sum -9.519 -12.664 -6.771 17.229 Atomic orbital electron populations 1.23839 0.96002 1.01729 1.02151 1.22978 0.96014 0.98650 0.99004 1.20818 0.98283 0.95372 0.98919 1.21267 0.97557 0.96395 0.98314 1.21702 0.98359 1.00180 0.97794 1.20617 0.81109 0.82091 0.86433 1.90642 1.69164 1.35614 1.48177 1.48006 1.39349 1.16593 1.28981 1.22164 0.91853 1.00008 0.88196 1.21111 0.96109 0.86981 0.91503 0.89984 1.22175 0.99550 1.00210 0.99703 1.44313 1.45692 1.16327 1.25251 1.18489 0.90109 0.83251 1.49173 0.91158 1.25861 0.97026 0.95682 0.95601 1.69918 1.37105 0.98597 1.47076 0.87266 0.87731 0.77796 0.78050 1.22214 1.22399 1.18032 1.21215 0.93679 0.92247 0.88412 0.94442 1.21887 1.03240 0.97091 0.96962 1.22533 1.01788 0.86706 0.92100 0.88700 0.88640 0.87431 0.91445 0.90909 0.91192 0.91212 0.89090 0.89125 0.91831 0.89856 0.93821 0.93723 0.93070 0.92599 0.90314 0.94426 0.92531 0.91107 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 14.32 29.02 0.42 -1.26 16 2 C -0.15 -1.33 9.52 -36.03 -0.34 -1.67 16 3 C -0.10 -0.87 5.66 -27.89 -0.16 -1.03 16 4 C -0.10 -1.09 4.49 -26.73 -0.12 -1.21 16 5 C -0.14 -1.66 4.04 -27.88 -0.11 -1.77 16 6 C 0.51 8.18 7.70 -10.99 -0.08 8.10 16 7 O -0.56 -10.58 15.39 5.55 0.09 -10.49 16 8 N -0.60 -9.96 2.59 -172.24 -0.45 -10.41 16 9 C 0.10 1.79 5.96 -3.60 -0.02 1.76 16 10 C 0.15 2.93 3.31 -67.49 -0.22 2.71 16 11 H 0.08 1.62 7.93 -51.93 -0.41 1.21 16 12 C -0.16 -2.97 9.13 37.16 0.34 -2.63 16 13 N -0.59 -13.03 1.94 -156.79 -0.30 -13.33 16 14 C -0.28 -7.30 8.65 -15.06 -0.13 -7.43 16 15 H 0.07 2.01 8.06 -52.49 -0.42 1.59 16 16 C 0.06 1.64 3.86 -17.43 -0.07 1.58 16 17 N -0.89 -25.33 13.97 55.49 0.78 -24.56 16 18 Si 0.86 21.04 24.97 -169.99 -4.25 16.80 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.26 -5.97 5.10 56.52 0.29 -5.68 16 22 C 0.15 2.95 2.03 -67.27 -0.14 2.82 16 23 H 0.04 0.78 5.84 -51.93 -0.30 0.48 16 24 C -0.13 -2.67 7.69 37.16 0.29 -2.39 16 25 C 0.09 1.49 5.83 -3.39 -0.02 1.47 16 26 H 0.09 0.69 8.06 -52.48 -0.42 0.26 16 27 H 0.10 0.75 7.84 -52.49 -0.41 0.34 16 28 H 0.11 0.90 8.06 -52.48 -0.42 0.47 16 29 H 0.07 0.58 7.79 -51.93 -0.40 0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.83 8.10 -51.92 -0.42 0.41 16 32 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.09 1.00 7.72 -51.93 -0.40 0.60 16 34 H 0.09 0.91 7.91 -51.93 -0.41 0.50 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.46 6.98 -51.93 -0.36 1.10 16 37 H 0.04 0.84 7.00 -51.93 -0.36 0.48 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.08 1.71 7.49 -51.92 -0.39 1.32 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.27 3.36 -51.93 -0.17 1.09 16 44 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 45 H 0.07 0.93 5.91 -51.93 -0.31 0.62 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -29.55 343.64 -7.16 -36.72 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.83 Total: 1.05 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.38 Total: -0.95 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.03 Total: -48.30 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.25 Total: 16.80 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.55 -7.16 -36.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.955 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds