Wall clock time and date at job start Tue Mar 31 2020 01:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 115.55285 * 2 1 4 4 C 1.53003 * 117.49890 * 214.28794 * 2 1 3 5 5 C 1.52999 * 60.00116 * 252.51471 * 4 2 1 6 6 H 1.09003 * 117.51017 * 252.52174 * 5 4 2 7 7 C 1.52997 * 117.50041 * 107.49411 * 5 4 2 8 8 H 1.09000 * 115.55953 * 325.68580 * 7 5 4 9 9 C 1.53072 * 117.51213 * 179.97438 * 7 5 4 10 10 C 1.52995 * 117.49927 * 111.37797 * 7 5 4 11 11 H 1.08999 * 117.49724 * 215.00364 * 10 7 5 12 12 C 1.53001 * 117.49931 * 359.97438 * 10 7 5 13 13 N 1.46506 * 109.46817 * 184.91679 * 12 10 7 14 14 C 1.34779 * 119.99518 * 180.02562 * 13 12 10 15 15 O 1.21582 * 120.00164 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99899 * 179.97438 * 14 13 12 17 17 C 1.46503 * 120.00078 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.46798 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.46852 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47207 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99603 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99838 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00380 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 239.99776 * 24 22 20 27 27 H 1.48500 * 109.47454 * 119.99769 * 24 22 20 28 28 H 1.08999 * 109.47267 * 274.32866 * 1 2 3 29 29 H 1.08994 * 109.47142 * 34.33602 * 1 2 3 30 30 H 1.09004 * 109.46812 * 154.33663 * 1 2 3 31 31 H 1.08998 * 117.50186 * 145.01723 * 4 2 1 32 32 H 1.09009 * 117.49568 * 0.02562 * 4 2 1 33 33 H 1.08996 * 117.49756 * 145.03716 * 9 7 5 34 34 H 1.09001 * 117.53371 * 359.97438 * 9 7 5 35 35 H 1.08995 * 109.47219 * 64.91372 * 12 10 7 36 36 H 1.08997 * 109.47216 * 304.91430 * 12 10 7 37 37 H 0.96995 * 120.00065 * 359.97438 * 13 12 10 38 38 H 0.97009 * 120.00213 * 359.97438 * 16 14 13 39 39 H 1.08999 * 109.47202 * 60.00100 * 17 16 14 40 40 H 1.08998 * 109.47018 * 299.99734 * 17 16 14 41 41 H 1.08993 * 109.47525 * 59.99915 * 18 17 16 42 42 H 1.09006 * 109.47247 * 299.99366 * 18 17 16 43 43 H 1.09005 * 109.47493 * 59.99815 * 19 18 17 44 44 H 1.08998 * 109.47006 * 299.99778 * 19 18 17 45 45 H 0.97001 * 119.99667 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2365 -1.1213 -0.7646 5 6 2.2364 -1.1208 0.7654 6 1 3.1713 -0.8746 1.2689 7 6 1.3588 -2.1557 1.4722 8 1 0.4237 -2.4017 0.9690 9 6 1.3590 -2.1558 3.0030 10 6 2.0653 -3.2764 2.2376 11 1 1.5952 -4.2598 2.2376 12 6 3.5953 -3.2767 2.2372 13 7 4.0835 -4.4798 2.9157 14 6 5.4086 -4.6943 3.0368 15 8 6.1987 -3.8896 2.5825 16 7 5.8578 -5.8009 3.6614 17 6 7.2982 -6.0343 3.7925 18 6 7.5359 -7.3501 4.5362 19 6 9.0401 -7.5943 4.6725 20 6 9.2744 -8.8900 5.4055 21 1 8.4343 -9.4801 5.7410 22 6 10.5610 -9.3216 5.6488 23 7 11.5840 -8.6027 5.2408 24 14 10.8513 -10.9280 6.5568 25 1 9.5452 -11.5426 6.9056 26 1 11.6204 -10.6625 7.7991 27 1 11.6192 -11.8559 5.6881 28 1 -0.3634 0.0776 1.0247 29 1 -0.3633 0.8485 -0.5796 30 1 -0.3633 -0.9263 -0.4451 31 1 3.1715 -0.8757 -1.2680 32 1 1.6111 -1.8588 -1.2679 33 1 0.4240 -2.4018 3.5063 34 1 1.9846 -1.4190 3.5068 35 1 3.9589 -2.3919 2.7597 36 1 3.9583 -3.2665 1.2095 37 1 3.4532 -5.1216 3.2784 38 1 5.2274 -6.4428 4.0242 39 1 7.7497 -5.2148 4.3516 40 1 7.7489 -6.0900 2.8016 41 1 7.0843 -8.1699 3.9776 42 1 7.0853 -7.2940 5.5271 43 1 9.4922 -6.7745 5.2309 44 1 9.4904 -7.6506 3.6815 45 1 11.4332 -7.7687 4.7690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884124349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:51 Heat of formation + Delta-G solvation = -13.144472 kcal Electronic energy + Delta-G solvation = -20757.477337 eV Core-core repulsion = 17582.384713 eV Total energy + Delta-G solvation = -3175.092624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.02431 -39.24581 -36.65450 -35.50312 -34.04060 -33.50137 -31.03419 -28.90636 -27.53924 -25.70449 -24.07587 -22.89009 -22.07657 -21.18485 -20.89040 -20.57744 -19.24568 -17.90724 -16.90605 -16.65037 -15.96563 -15.71186 -15.30226 -14.57458 -14.27854 -14.02992 -13.92706 -13.73390 -13.56589 -13.20097 -13.15869 -12.88430 -12.84488 -11.87580 -11.82336 -11.77693 -11.60714 -11.55938 -11.24982 -10.84440 -10.77886 -10.71829 -10.23798 -10.12712 -10.10704 -9.98342 -9.83251 -9.65666 -9.17815 -8.61902 -8.55999 -8.31898 -6.35735 -4.05330 2.74670 3.10147 3.36304 3.43871 3.48297 3.61032 3.72275 4.03298 4.27075 4.40371 4.43946 4.54195 4.55591 4.79487 4.86666 4.89160 4.93060 4.98040 5.34825 5.41051 5.41536 5.41947 5.43854 5.50144 5.58383 5.63463 5.65587 5.73594 5.75214 5.84314 5.90075 5.93913 6.09181 6.44968 6.45788 6.52089 6.74350 6.90002 7.04653 7.38391 7.50740 8.13556 8.20370 8.46936 8.73932 8.88821 9.67347 11.05179 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.055308 B = 0.002035 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.136834 B =13757.697034 C =14070.823581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.152 4.152 3 H 0.103 0.897 4 C -0.172 4.172 5 C -0.125 4.125 6 H 0.107 0.893 7 C -0.107 4.107 8 H 0.108 0.892 9 C -0.169 4.169 10 C -0.162 4.162 11 H 0.110 0.890 12 C 0.173 3.827 13 N -0.750 5.750 14 C 0.700 3.300 15 O -0.594 6.594 16 N -0.742 5.742 17 C 0.135 3.865 18 C -0.113 4.113 19 C 0.010 3.990 20 C -0.603 4.603 21 H 0.050 0.950 22 C 0.013 3.987 23 N -0.913 5.913 24 Si 1.075 2.925 25 H -0.290 1.290 26 H -0.287 1.287 27 H -0.287 1.287 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.395 0.605 38 H 0.394 0.606 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.869 14.333 -8.416 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.170 4.170 3 H 0.121 0.879 4 C -0.209 4.209 5 C -0.143 4.143 6 H 0.125 0.875 7 C -0.125 4.125 8 H 0.126 0.874 9 C -0.205 4.205 10 C -0.181 4.181 11 H 0.128 0.872 12 C 0.049 3.951 13 N -0.406 5.406 14 C 0.399 3.601 15 O -0.473 6.473 16 N -0.396 5.396 17 C 0.011 3.989 18 C -0.151 4.151 19 C -0.028 4.028 20 C -0.642 4.642 21 H 0.068 0.932 22 C -0.191 4.191 23 N -0.550 5.550 24 Si 0.904 3.096 25 H -0.216 1.216 26 H -0.213 1.213 27 H -0.213 1.213 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.228 0.772 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.919 14.083 -8.275 28.964 hybrid contribution -1.803 0.388 -0.230 1.859 sum -25.723 14.471 -8.505 30.715 Atomic orbital electron populations 1.21335 0.92881 1.01693 1.01852 1.22359 0.95441 0.94409 1.04758 0.87880 1.23110 1.02670 1.01295 0.93790 1.21845 1.00120 0.98599 0.93733 0.87484 1.21779 0.99577 0.97528 0.93633 0.87446 1.23169 1.02549 1.01077 0.93746 1.22530 0.94304 0.95266 1.05952 0.87160 1.20641 0.90107 0.86942 0.97430 1.45106 1.05544 1.26185 1.63793 1.16003 0.82241 0.82413 0.79399 1.90915 1.54893 1.46986 1.54475 1.45347 1.09343 1.23380 1.61579 1.21494 0.77722 0.98818 1.00828 1.21749 1.01013 0.93662 0.98700 1.19169 0.89570 0.97336 0.96711 1.22075 0.94724 1.07124 1.40227 0.93212 1.25870 0.92419 1.03768 0.96995 1.70713 1.32773 1.15017 1.36449 0.83460 0.75128 0.74763 0.76263 1.21580 1.21344 1.21336 0.92076 0.92390 0.92625 0.88673 0.88717 0.88548 0.88381 0.91713 0.91208 0.77194 0.77286 0.92056 0.92043 0.92596 0.92592 0.97136 0.97127 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 9.04 37.16 0.34 -0.32 16 2 C -0.15 -0.99 6.41 -90.62 -0.58 -1.57 16 3 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.17 -1.21 9.90 -26.73 -0.26 -1.47 16 5 C -0.12 -0.92 5.10 -90.62 -0.46 -1.38 16 6 H 0.11 0.88 7.34 -51.93 -0.38 0.50 16 7 C -0.11 -0.71 5.18 -90.59 -0.47 -1.18 16 8 H 0.11 0.64 7.19 -51.93 -0.37 0.27 16 9 C -0.17 -1.10 9.90 -26.71 -0.26 -1.36 16 10 C -0.16 -1.17 5.84 -90.63 -0.53 -1.70 16 11 H 0.11 0.69 8.04 -51.93 -0.42 0.27 16 12 C 0.17 1.77 4.76 -4.04 -0.02 1.75 16 13 N -0.75 -8.41 5.56 -65.22 -0.36 -8.77 16 14 C 0.70 11.05 8.57 -86.92 -0.74 10.31 16 15 O -0.59 -12.02 16.34 5.29 0.09 -11.94 16 16 N -0.74 -11.09 5.56 -65.22 -0.36 -11.45 16 17 C 0.13 2.46 5.67 -4.04 -0.02 2.44 16 18 C -0.11 -2.27 5.27 -26.73 -0.14 -2.41 16 19 C 0.01 0.25 4.28 -27.88 -0.12 0.13 16 20 C -0.60 -17.24 9.11 -34.44 -0.31 -17.55 16 21 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 22 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 23 N -0.91 -28.34 13.65 55.43 0.76 -27.59 16 24 Si 1.08 25.50 29.90 -169.99 -5.08 20.42 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.29 7.40 -51.93 -0.38 -0.10 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.62 8.05 -51.92 -0.42 0.21 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 35 H 0.06 0.73 7.62 -51.93 -0.40 0.34 16 36 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 37 H 0.39 3.23 8.42 -40.82 -0.34 2.88 16 38 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 44 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 45 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -33.95 369.69 -11.11 -45.06 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.03 Total: 2.73 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.69 Total: -14.03 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.03 Total: -47.81 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.95 -11.11 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.918 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds