Wall clock time and date at job start Tue Mar 31 2020 02:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.50079 * 2 1 4 4 C 1.53196 * 109.52109 * 120.08154 * 2 1 3 5 5 N 1.46925 * 108.77544 * 174.59882 * 4 2 1 6 6 C 1.36940 * 120.63078 * 126.37078 * 5 4 2 7 7 H 1.08003 * 119.99429 * 332.61885 * 6 5 4 8 8 C 1.38804 * 120.00125 * 152.62585 * 6 5 4 9 9 N 1.31622 * 120.00058 * 159.36263 * 8 6 5 10 10 Si 1.86803 * 120.00031 * 339.35550 * 8 6 5 11 11 H 1.48504 * 109.46757 * 92.90261 * 10 8 6 12 12 H 1.48502 * 109.47198 * 212.90147 * 10 8 6 13 13 H 1.48499 * 109.47161 * 332.90565 * 10 8 6 14 14 C 1.46923 * 118.74189 * 306.39088 * 5 4 2 15 15 C 1.53193 * 108.77460 * 53.60570 * 14 5 4 16 16 C 1.53039 * 109.31501 * 305.36576 * 15 14 5 17 17 H 1.09004 * 109.44995 * 181.37547 * 16 15 14 18 18 N 1.46498 * 109.46426 * 301.34803 * 16 15 14 19 19 C 1.34777 * 119.99646 * 275.06574 * 18 16 15 20 20 O 1.21280 * 120.00124 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99942 * 180.27209 * 19 18 16 22 22 C 1.54273 * 110.03095 * 297.63184 * 21 19 18 23 23 C 1.54968 * 104.15740 * 217.13386 * 22 21 19 24 24 C 1.54896 * 102.77752 * 37.89266 * 23 22 21 25 25 C 1.53878 * 110.03065 * 180.41821 * 21 19 18 26 26 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47165 * 300.07015 * 1 2 3 28 28 H 1.09007 * 109.46661 * 60.06692 * 1 2 3 29 29 H 1.09000 * 109.58454 * 294.38501 * 4 2 1 30 30 H 1.09000 * 109.58723 * 54.81037 * 4 2 1 31 31 H 0.97001 * 119.99743 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.59273 * 173.39243 * 14 5 4 33 33 H 1.09003 * 109.58702 * 293.68427 * 14 5 4 34 34 H 1.09003 * 109.49996 * 185.41335 * 15 14 5 35 35 H 1.09000 * 109.49682 * 65.31800 * 15 14 5 36 36 H 0.96997 * 120.00261 * 95.06347 * 18 16 15 37 37 H 1.09000 * 110.01596 * 59.02509 * 21 19 18 38 38 H 1.09000 * 110.48535 * 335.78190 * 22 21 19 39 39 H 1.09002 * 110.48476 * 98.43077 * 22 21 19 40 40 H 1.08998 * 110.72345 * 279.57393 * 23 22 21 41 41 H 1.08997 * 110.75887 * 156.22351 * 23 22 21 42 42 H 1.08998 * 110.48175 * 203.40252 * 24 23 22 43 43 H 1.09003 * 110.48695 * 80.75602 * 24 23 22 44 44 H 1.09007 * 110.02815 * 238.56644 * 25 21 19 45 45 H 1.09002 * 110.03382 * 359.94942 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0419 -0.7237 1.2494 5 7 3.5052 -0.8285 1.1690 6 6 4.2943 -0.3776 2.1934 7 1 3.9451 0.4191 2.8335 8 6 5.5429 -0.9445 2.4089 9 7 6.4561 -0.2856 3.0903 10 14 5.9271 -2.6426 1.7320 11 1 6.5610 -2.5109 0.3955 12 1 6.8564 -3.3443 2.6536 13 1 4.6695 -3.4226 1.6086 14 6 4.1059 -1.4257 -0.0314 15 6 3.5708 -0.6942 -1.2665 16 6 2.0408 -0.7229 -1.2485 17 1 1.6579 -0.2242 -2.1390 18 7 1.5788 -2.1130 -1.2309 19 6 1.4507 -2.7952 -2.3862 20 8 1.7174 -2.2581 -3.4404 21 6 0.9696 -4.2232 -2.3686 22 6 1.9639 -5.1062 -1.5866 23 6 1.9770 -6.4449 -2.3671 24 6 1.8849 -5.9822 -3.8425 25 6 0.9190 -4.7800 -3.8022 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5149 0.8893 28 1 -0.3633 0.5128 -0.8907 29 1 1.7644 -0.1580 2.1388 30 1 1.6062 -1.7217 1.2979 31 1 7.3287 -0.6816 3.2406 32 1 5.1901 -1.3232 0.0127 33 1 3.8406 -2.4815 -0.0862 34 1 3.9334 -1.1886 -2.1678 35 1 3.9155 0.3398 -1.2546 36 1 1.3652 -2.5425 -0.3878 37 1 -0.0184 -4.2785 -1.9115 38 1 2.9562 -4.6552 -1.5864 39 1 1.6145 -5.2623 -0.5660 40 1 1.1151 -7.0560 -2.0993 41 1 2.9060 -6.9866 -2.1895 42 1 1.4782 -6.7777 -4.4670 43 1 2.8643 -5.6726 -4.2071 44 1 -0.0934 -5.1064 -4.0405 45 1 1.2416 -4.0171 -4.5108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941720994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:33 Heat of formation + Delta-G solvation = -35.088704 kcal Electronic energy + Delta-G solvation = -23722.976971 eV Core-core repulsion = 20546.932774 eV Total energy + Delta-G solvation = -3176.044197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.32233 -38.42927 -36.79808 -34.42348 -32.63462 -31.59075 -30.60449 -29.00250 -28.69253 -26.36049 -25.19604 -22.61611 -21.63721 -21.52572 -20.79051 -19.51075 -18.83880 -17.46458 -16.78298 -15.92980 -15.53794 -15.08778 -14.83907 -14.70442 -14.28904 -13.73350 -13.58348 -13.49875 -13.41518 -13.17151 -12.53382 -12.32238 -11.87016 -11.71716 -11.61403 -11.53437 -11.39740 -11.27178 -11.22114 -11.17018 -10.86626 -10.66988 -10.61132 -10.53273 -10.23677 -9.97887 -9.69610 -9.53498 -9.48716 -8.79282 -8.57067 -7.00036 -5.97641 -3.33731 2.82752 3.30872 3.41763 3.45169 3.47464 4.38697 4.50381 4.50713 4.68038 4.89807 4.99658 5.16136 5.23224 5.24942 5.33413 5.34145 5.40678 5.42806 5.51647 5.55356 5.70426 5.75171 5.81866 5.84435 5.87725 5.95392 5.96811 6.04250 6.06742 6.15041 6.20923 6.25304 6.29156 6.36807 6.43280 6.57952 6.63885 6.68592 6.78938 6.94770 7.75548 7.93039 8.29919 8.44032 8.90828 9.69312 10.06452 11.18267 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.006386 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.922462 B = 4383.645489 C = 5444.070190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 H 0.086 0.914 4 C 0.155 3.845 5 N -0.605 5.605 6 C -0.261 4.261 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.907 5.907 10 Si 0.883 3.117 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.130 3.870 15 C -0.146 4.146 16 C 0.159 3.841 17 H 0.078 0.922 18 N -0.714 5.714 19 C 0.517 3.483 20 O -0.547 6.547 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.018 0.982 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.400 0.600 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 -8.713 -10.085 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 H 0.104 0.896 4 C 0.029 3.971 5 N -0.328 5.328 6 C -0.389 4.389 7 H 0.103 0.897 8 C -0.174 4.174 9 N -0.550 5.550 10 Si 0.714 3.286 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.197 1.197 14 C 0.004 3.996 15 C -0.186 4.186 16 C 0.055 3.945 17 H 0.096 0.904 18 N -0.366 5.366 19 C 0.303 3.697 20 O -0.425 6.425 21 C -0.135 4.135 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.155 4.155 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.236 0.764 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.667 -8.294 -10.721 18.552 hybrid contribution 0.318 -1.126 0.153 1.180 sum -12.349 -9.420 -10.568 18.786 Atomic orbital electron populations 1.21751 0.95452 1.01363 1.01327 1.21944 0.94857 1.00994 0.96253 0.89609 1.20930 0.84523 0.96458 0.95207 1.44350 1.00586 1.71961 1.15895 1.18908 0.97877 1.13999 1.08120 0.89689 1.25260 0.96397 0.98025 0.97741 1.69838 1.04398 1.37029 1.43762 0.86946 0.77605 0.87038 0.77006 1.21741 1.23228 1.19656 1.21270 0.97944 0.94517 0.85861 1.22384 0.94891 1.02221 0.99135 1.20885 0.94363 0.80985 0.98286 0.90442 1.46158 1.67348 1.14170 1.08883 1.20518 0.77231 0.88124 0.83793 1.90632 1.51000 1.70041 1.30818 1.21948 1.00609 0.92210 0.98759 1.22399 0.99328 0.95148 0.98713 1.22508 1.01817 0.96645 0.95094 1.22363 0.99902 0.97326 0.96562 1.22146 0.99630 0.98238 0.95518 0.93077 0.92542 0.93155 0.91533 0.96464 0.92765 0.91148 0.95842 0.92325 0.90841 0.76446 0.88707 0.90928 0.90836 0.91355 0.91371 0.91686 0.91543 0.91730 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.06 37.16 0.34 -1.39 16 2 C -0.12 -1.83 2.67 -90.49 -0.24 -2.07 16 3 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 4 C 0.16 2.81 5.50 -3.71 -0.02 2.79 16 5 N -0.60 -13.72 2.77 -172.32 -0.48 -14.20 16 6 C -0.26 -7.11 10.03 -15.06 -0.15 -7.26 16 7 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 8 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 9 N -0.91 -27.63 13.97 55.49 0.78 -26.85 16 10 Si 0.88 22.28 24.34 -169.99 -4.14 18.14 16 11 H -0.29 -7.20 6.62 56.52 0.37 -6.82 16 12 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 13 H -0.27 -6.61 6.64 56.52 0.38 -6.23 16 14 C 0.13 2.80 3.95 -3.71 -0.01 2.78 16 15 C -0.15 -2.72 5.77 -26.61 -0.15 -2.87 16 16 C 0.16 2.54 2.21 -67.89 -0.15 2.39 16 17 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 18 N -0.71 -10.36 3.54 -53.76 -0.19 -10.55 16 19 C 0.52 7.64 6.96 -10.99 -0.08 7.56 16 20 O -0.55 -9.86 14.87 5.56 0.08 -9.77 16 21 C -0.11 -1.30 3.29 -90.65 -0.30 -1.60 16 22 C -0.12 -1.32 6.30 -25.03 -0.16 -1.48 16 23 C -0.12 -1.18 6.91 -24.69 -0.17 -1.35 16 24 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 25 C -0.12 -1.29 6.40 -25.61 -0.16 -1.46 16 26 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 30 H 0.02 0.30 6.64 -51.93 -0.34 -0.05 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.07 1.71 4.50 -51.93 -0.23 1.48 16 33 H 0.02 0.50 6.67 -51.93 -0.35 0.16 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.40 5.40 6.72 -40.82 -0.27 5.13 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 1.19 6.39 -51.93 -0.33 0.86 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -31.07 336.86 -8.22 -39.29 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.82 Total: 3.62 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.52 Total: -4.74 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.11 Total: -51.61 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.07 -8.22 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941720994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.200 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds