Wall clock time and date at job start Tue Mar 31 2020 02:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.50079 * 2 1 4 4 C 1.53196 * 109.52109 * 120.08154 * 2 1 3 5 5 N 1.46925 * 108.77544 * 174.59882 * 4 2 1 6 6 C 1.36940 * 120.63078 * 126.37078 * 5 4 2 7 7 H 1.08003 * 119.99429 * 332.61885 * 6 5 4 8 8 C 1.38804 * 120.00125 * 152.62585 * 6 5 4 9 9 N 1.31622 * 120.00058 * 159.36263 * 8 6 5 10 10 Si 1.86803 * 120.00031 * 339.35550 * 8 6 5 11 11 H 1.48504 * 109.46757 * 92.90261 * 10 8 6 12 12 H 1.48502 * 109.47198 * 212.90147 * 10 8 6 13 13 H 1.48499 * 109.47161 * 332.90565 * 10 8 6 14 14 C 1.46923 * 118.74189 * 306.39088 * 5 4 2 15 15 C 1.53193 * 108.77460 * 53.60570 * 14 5 4 16 16 C 1.53039 * 109.31501 * 305.36576 * 15 14 5 17 17 H 1.09004 * 109.44995 * 181.37547 * 16 15 14 18 18 N 1.46498 * 109.46426 * 301.34803 * 16 15 14 19 19 C 1.34777 * 119.99646 * 275.06574 * 18 16 15 20 20 O 1.21280 * 120.00124 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99942 * 180.27209 * 19 18 16 22 22 C 1.54273 * 110.03095 * 297.63184 * 21 19 18 23 23 C 1.54968 * 104.15740 * 217.13386 * 22 21 19 24 24 C 1.54896 * 102.77752 * 37.89266 * 23 22 21 25 25 C 1.53878 * 110.03065 * 180.41821 * 21 19 18 26 26 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47165 * 300.07015 * 1 2 3 28 28 H 1.09007 * 109.46661 * 60.06692 * 1 2 3 29 29 H 1.09000 * 109.58454 * 294.38501 * 4 2 1 30 30 H 1.09000 * 109.58723 * 54.81037 * 4 2 1 31 31 H 0.97001 * 119.99743 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.59273 * 173.39243 * 14 5 4 33 33 H 1.09003 * 109.58702 * 293.68427 * 14 5 4 34 34 H 1.09003 * 109.49996 * 185.41335 * 15 14 5 35 35 H 1.09000 * 109.49682 * 65.31800 * 15 14 5 36 36 H 0.96997 * 120.00261 * 95.06347 * 18 16 15 37 37 H 1.09000 * 110.01596 * 59.02509 * 21 19 18 38 38 H 1.09000 * 110.48535 * 335.78190 * 22 21 19 39 39 H 1.09002 * 110.48476 * 98.43077 * 22 21 19 40 40 H 1.08998 * 110.72345 * 279.57393 * 23 22 21 41 41 H 1.08997 * 110.75887 * 156.22351 * 23 22 21 42 42 H 1.08998 * 110.48175 * 203.40252 * 24 23 22 43 43 H 1.09003 * 110.48695 * 80.75602 * 24 23 22 44 44 H 1.09007 * 110.02815 * 238.56644 * 25 21 19 45 45 H 1.09002 * 110.03382 * 359.94942 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0419 -0.7237 1.2494 5 7 3.5052 -0.8285 1.1690 6 6 4.2943 -0.3776 2.1934 7 1 3.9451 0.4191 2.8335 8 6 5.5429 -0.9445 2.4089 9 7 6.4561 -0.2856 3.0903 10 14 5.9271 -2.6426 1.7320 11 1 6.5610 -2.5109 0.3955 12 1 6.8564 -3.3443 2.6536 13 1 4.6695 -3.4226 1.6086 14 6 4.1059 -1.4257 -0.0314 15 6 3.5708 -0.6942 -1.2665 16 6 2.0408 -0.7229 -1.2485 17 1 1.6579 -0.2242 -2.1390 18 7 1.5788 -2.1130 -1.2309 19 6 1.4507 -2.7952 -2.3862 20 8 1.7174 -2.2581 -3.4404 21 6 0.9696 -4.2232 -2.3686 22 6 1.9639 -5.1062 -1.5866 23 6 1.9770 -6.4449 -2.3671 24 6 1.8849 -5.9822 -3.8425 25 6 0.9190 -4.7800 -3.8022 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5149 0.8893 28 1 -0.3633 0.5128 -0.8907 29 1 1.7644 -0.1580 2.1388 30 1 1.6062 -1.7217 1.2979 31 1 7.3287 -0.6816 3.2406 32 1 5.1901 -1.3232 0.0127 33 1 3.8406 -2.4815 -0.0862 34 1 3.9334 -1.1886 -2.1678 35 1 3.9155 0.3398 -1.2546 36 1 1.3652 -2.5425 -0.3878 37 1 -0.0184 -4.2785 -1.9115 38 1 2.9562 -4.6552 -1.5864 39 1 1.6145 -5.2623 -0.5660 40 1 1.1151 -7.0560 -2.0993 41 1 2.9060 -6.9866 -2.1895 42 1 1.4782 -6.7777 -4.4670 43 1 2.8643 -5.6726 -4.2071 44 1 -0.0934 -5.1064 -4.0405 45 1 1.2416 -4.0171 -4.5108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941720994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:32 Heat of formation + Delta-G solvation = -54.303581 kcal Electronic energy + Delta-G solvation = -23723.810190 eV Core-core repulsion = 20546.932774 eV Total energy + Delta-G solvation = -3176.877417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52753 -39.72714 -37.85989 -36.07993 -34.03838 -33.39639 -32.15335 -29.98024 -29.52911 -27.78255 -26.91063 -23.99901 -23.27788 -22.82887 -21.58419 -20.52601 -20.26404 -18.79669 -18.46603 -17.29997 -16.88685 -16.50372 -16.10838 -15.89491 -15.75321 -15.22822 -15.13118 -14.81823 -14.43166 -14.22508 -14.20002 -13.91204 -13.48026 -13.19574 -12.92422 -12.82197 -12.65527 -12.32360 -12.21228 -12.10975 -12.03653 -11.96443 -11.90113 -11.68410 -11.66701 -11.44361 -11.40272 -11.27477 -10.73313 -10.68724 -10.00383 -8.92858 -8.17779 -5.48945 1.28636 1.37151 1.46314 1.68496 2.27234 2.40032 3.02484 3.32934 3.53050 3.66259 3.71075 3.82868 3.93850 4.07081 4.20979 4.26164 4.39576 4.47295 4.52877 4.54286 4.55945 4.59184 4.68525 4.74716 4.79132 4.86319 4.92307 4.93598 4.96902 5.02176 5.07550 5.14955 5.19858 5.24066 5.24705 5.29927 5.38439 5.46117 5.48135 5.63402 5.85729 6.12374 6.61050 6.90103 7.29696 7.61273 8.01816 9.01973 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.006386 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.922462 B = 4383.645489 C = 5444.070190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 H 0.073 0.927 4 C 0.151 3.849 5 N -0.615 5.615 6 C -0.244 4.244 7 H 0.056 0.944 8 C -0.033 4.033 9 N -0.957 5.957 10 Si 0.942 3.058 11 H -0.289 1.289 12 H -0.312 1.312 13 H -0.252 1.252 14 C 0.132 3.868 15 C -0.139 4.139 16 C 0.167 3.833 17 H 0.079 0.921 18 N -0.709 5.709 19 C 0.515 3.485 20 O -0.583 6.583 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.260 0.740 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.408 0.592 37 H 0.125 0.875 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.823 -10.863 -10.922 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.129 4.129 3 H 0.091 0.909 4 C 0.026 3.974 5 N -0.340 5.340 6 C -0.374 4.374 7 H 0.074 0.926 8 C -0.228 4.228 9 N -0.603 5.603 10 Si 0.772 3.228 11 H -0.216 1.216 12 H -0.241 1.241 13 H -0.176 1.176 14 C 0.007 3.993 15 C -0.180 4.180 16 C 0.062 3.938 17 H 0.097 0.903 18 N -0.360 5.360 19 C 0.303 3.697 20 O -0.463 6.463 21 C -0.129 4.129 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.162 4.162 25 C -0.156 4.156 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.245 0.755 37 H 0.143 0.857 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.516 -10.466 -11.571 22.004 hybrid contribution 1.147 -0.366 0.380 1.262 sum -14.369 -10.833 -11.191 21.191 Atomic orbital electron populations 1.21683 0.92363 1.02619 1.02360 1.21798 0.97247 0.99650 0.94214 0.90880 1.21160 0.81658 0.98072 0.96512 1.44437 1.02361 1.71999 1.15154 1.18880 0.98028 1.12501 1.07993 0.92593 1.25850 0.96613 1.01227 0.99093 1.69966 1.04957 1.38626 1.46736 0.85980 0.77861 0.82920 0.76036 1.21621 1.24092 1.17635 1.21202 0.96277 0.95273 0.86562 1.22280 0.97132 1.01131 0.97424 1.20701 0.92214 0.82232 0.98668 0.90344 1.46085 1.67044 1.13482 1.09389 1.21155 0.76282 0.89267 0.83035 1.90626 1.52479 1.71117 1.32103 1.22025 1.01908 0.89567 0.99411 1.22425 0.97765 0.95774 0.99862 1.22515 1.02877 0.95968 0.94183 1.22369 0.98907 0.97499 0.97398 1.22150 1.01025 0.97812 0.94574 0.91688 0.91469 0.92247 0.91962 0.93927 0.93080 0.94151 0.94863 0.92614 0.91760 0.75535 0.85742 0.93666 0.89314 0.89185 0.91299 0.89783 0.93290 0.89544 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.06 71.98 0.65 -2.12 16 2 C -0.11 -3.09 2.67 -10.71 -0.03 -3.12 16 3 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.15 5.15 5.50 86.36 0.48 5.62 16 5 N -0.62 -27.51 2.77 -699.10 -1.94 -29.45 16 6 C -0.24 -13.51 10.03 84.03 0.84 -12.67 16 7 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 8 C -0.03 -1.92 5.23 84.86 0.44 -1.48 16 9 N -0.96 -60.10 13.97 21.65 0.30 -59.80 16 10 Si 0.94 46.57 24.34 68.60 1.67 48.24 16 11 H -0.29 -14.06 6.62 99.48 0.66 -13.40 16 12 H -0.31 -15.70 7.11 99.48 0.71 -15.00 16 13 H -0.25 -11.51 6.64 99.48 0.66 -10.85 16 14 C 0.13 5.60 3.95 86.36 0.34 5.94 16 15 C -0.14 -5.11 5.77 30.67 0.18 -4.93 16 16 C 0.17 5.04 2.21 45.02 0.10 5.14 16 17 H 0.08 2.43 7.58 -2.39 -0.02 2.41 16 18 N -0.71 -18.67 3.54 -442.40 -1.57 -20.24 16 19 C 0.51 14.09 6.96 87.66 0.61 14.70 16 20 O -0.58 -20.41 14.87 -3.03 -0.05 -20.46 16 21 C -0.11 -2.13 3.29 -10.81 -0.04 -2.16 16 22 C -0.12 -2.33 6.30 31.70 0.20 -2.13 16 23 C -0.12 -1.87 6.91 31.92 0.22 -1.65 16 24 C -0.12 -2.16 6.83 31.67 0.22 -1.95 16 25 C -0.12 -2.30 6.40 31.32 0.20 -2.10 16 26 H 0.06 1.20 7.54 -2.39 -0.02 1.18 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.17 8.14 -2.38 -0.02 1.16 16 29 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 30 H 0.04 1.28 6.64 -2.39 -0.02 1.27 16 31 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 32 H 0.04 1.96 4.50 -2.39 -0.01 1.95 16 33 H 0.03 1.36 6.67 -2.39 -0.02 1.34 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.41 9.50 6.72 -92.71 -0.62 8.88 16 37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.12 7.85 -2.39 -0.02 1.11 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.06 1.59 6.39 -2.39 -0.02 1.57 16 Total: -1.00 -69.01 336.86 3.08 -65.93 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.24 Total: 18.68 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 4.41 Total: -2.91 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -3.20 Total: -109.48 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.67 Total: 48.24 kcal Total: -69.01 3.08 -65.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941720994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.623 kcal (2) G-P(sol) polarization free energy of solvation -69.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds