Wall clock time and date at job start Tue Mar 31 2020 02:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46064 * 2 1 4 4 C 1.53043 * 109.46184 * 119.95622 * 2 1 3 5 5 C 1.53187 * 109.31278 * 181.38633 * 4 2 1 6 6 N 1.46918 * 108.77613 * 305.36368 * 5 4 2 7 7 C 1.36938 * 120.63373 * 233.58564 * 6 5 4 8 8 H 1.08004 * 119.99712 * 27.69303 * 7 6 5 9 9 C 1.38807 * 120.00472 * 207.68621 * 7 6 5 10 10 N 1.31618 * 119.99851 * 17.37207 * 9 7 6 11 11 Si 1.86797 * 120.00235 * 197.36766 * 9 7 6 12 12 H 1.48497 * 109.47170 * 90.00356 * 11 9 7 13 13 H 1.48506 * 109.47392 * 209.99993 * 11 9 7 14 14 H 1.48498 * 109.47322 * 330.00431 * 11 9 7 15 15 C 1.46925 * 118.74022 * 53.61161 * 6 5 4 16 16 C 1.53040 * 109.46400 * 240.02675 * 2 1 3 17 17 H 1.09001 * 109.49555 * 298.56698 * 16 2 1 18 18 N 1.46506 * 109.49575 * 58.62778 * 16 2 1 19 19 C 1.34776 * 120.00020 * 204.93815 * 18 16 2 20 20 O 1.21291 * 119.99658 * 0.02562 * 19 18 16 21 21 C 1.50694 * 120.00232 * 179.97438 * 19 18 16 22 22 C 1.54257 * 110.03464 * 297.17099 * 21 19 18 23 23 C 1.54888 * 104.19850 * 217.10460 * 22 21 19 24 24 C 1.54894 * 102.74859 * 37.93701 * 23 22 21 25 25 C 1.53872 * 110.03536 * 179.97438 * 21 19 18 26 26 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46944 * 299.97819 * 1 2 3 28 28 H 1.08996 * 109.46612 * 59.97194 * 1 2 3 29 29 H 1.09001 * 109.49760 * 301.34053 * 4 2 1 30 30 H 1.09000 * 109.49721 * 61.40021 * 4 2 1 31 31 H 1.08996 * 109.58826 * 65.15527 * 5 4 2 32 32 H 1.09003 * 109.58336 * 185.57984 * 5 4 2 33 33 H 0.97004 * 120.00023 * 179.97438 * 10 9 7 34 34 H 1.08997 * 109.58918 * 186.60000 * 15 6 5 35 35 H 1.09003 * 109.58424 * 66.17526 * 15 6 5 36 36 H 0.96991 * 119.99778 * 24.93778 * 18 16 2 37 37 H 1.08999 * 110.01320 * 58.60890 * 21 19 18 38 38 H 1.09007 * 110.49087 * 335.77835 * 22 21 19 39 39 H 1.09003 * 110.48956 * 98.42207 * 22 21 19 40 40 H 1.09005 * 110.75388 * 279.63099 * 23 22 21 41 41 H 1.08998 * 110.76424 * 156.25406 * 23 22 21 42 42 H 1.09000 * 110.48540 * 203.38215 * 24 23 22 43 43 H 1.08997 * 110.48028 * 80.74158 * 24 23 22 44 44 H 1.09002 * 110.03518 * 238.57546 * 25 21 19 45 45 H 1.09002 * 110.03271 * 0.02562 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7205 1.2502 5 6 3.5714 -0.6883 1.2644 6 7 4.0679 -1.2488 0.0003 7 6 4.9765 -2.2733 0.0004 8 1 5.0097 -2.9655 0.8288 9 6 5.8547 -2.4223 -1.0642 10 7 6.0605 -1.4206 -1.8927 11 14 6.7446 -4.0445 -1.3208 12 1 5.9276 -4.9245 -2.1945 13 1 8.0592 -3.7917 -1.9637 14 1 6.9545 -4.7071 -0.0085 15 6 3.5714 -0.6887 -1.2641 16 6 2.0400 -0.7209 -1.2500 17 1 1.6979 -1.7558 -1.2381 18 7 1.5250 -0.0494 -2.4459 19 6 1.3978 -0.7331 -3.6005 20 8 1.7092 -1.9043 -3.6491 21 6 0.8676 -0.0426 -4.8305 22 6 -0.5814 0.4282 -4.5891 23 6 -1.2859 0.2025 -5.9499 24 6 -0.6591 -1.1252 -6.4432 25 6 0.8188 -1.0301 -6.0096 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8902 28 1 -0.3632 0.5143 -0.8897 29 1 1.6573 -0.2204 2.1399 30 1 1.6974 -1.7553 1.2389 31 1 3.9143 0.3412 1.3673 32 1 3.9417 -1.2842 2.0986 33 1 6.6745 -1.5246 -2.6365 34 1 3.9418 -1.2848 -2.0982 35 1 3.9144 0.3408 -1.3673 36 1 1.2757 0.8870 -2.4068 37 1 1.5003 0.8084 -5.0826 38 1 -1.0531 -0.1723 -3.8112 39 1 -0.5996 1.4845 -4.3206 40 1 -1.0617 1.0155 -6.6404 41 1 -2.3621 0.0948 -5.8146 42 1 -0.7340 -1.2025 -7.5279 43 1 -1.1433 -1.9765 -5.9648 44 1 1.4270 -0.6577 -6.8340 45 1 1.1783 -2.0089 -5.6920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964612041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:34 Heat of formation + Delta-G solvation = -41.421066 kcal Electronic energy + Delta-G solvation = -23389.225456 eV Core-core repulsion = 20212.906668 eV Total energy + Delta-G solvation = -3176.318789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92312 -38.06796 -36.61069 -34.29467 -33.06088 -30.95714 -29.81866 -28.67130 -28.19357 -27.20231 -24.05425 -22.78352 -21.23967 -20.91998 -20.60201 -19.62694 -18.85093 -17.08512 -16.76039 -15.86718 -15.26124 -14.83782 -14.77095 -14.06917 -13.71591 -13.56819 -13.51631 -13.37782 -13.25584 -12.80101 -12.37728 -12.06718 -11.68369 -11.63076 -11.51965 -11.27145 -11.16571 -11.06714 -10.87140 -10.82171 -10.69542 -10.56829 -10.46730 -10.40210 -10.12593 -9.92146 -9.84745 -9.46305 -9.16482 -8.43721 -8.38620 -6.62675 -5.72453 -3.15573 3.14487 3.45258 3.51964 3.52918 3.64976 4.49200 4.56471 4.60698 4.78496 5.19002 5.26766 5.29184 5.36915 5.42511 5.43356 5.49750 5.55337 5.60239 5.64956 5.65880 5.77785 5.85761 5.93775 6.03354 6.03887 6.07038 6.14725 6.16683 6.27194 6.29294 6.42454 6.46438 6.48793 6.58655 6.76839 6.79818 6.99227 7.05537 7.34662 7.76770 7.86646 8.04199 8.51404 8.77331 9.26425 9.90503 10.45231 11.35521 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.005847 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.719631 B = 4787.282976 C = 6164.670671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.589 5.589 7 C -0.256 4.256 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.900 5.900 11 Si 0.901 3.099 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.166 3.834 16 C 0.124 3.876 17 H 0.080 0.920 18 N -0.718 5.718 19 C 0.514 3.486 20 O -0.533 6.533 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.120 4.120 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.017 0.983 32 H 0.055 0.945 33 H 0.253 0.747 34 H 0.095 0.905 35 H 0.015 0.985 36 H 0.391 0.609 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.935 7.020 -4.141 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.731 3.269 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.039 3.961 16 C 0.019 3.981 17 H 0.098 0.902 18 N -0.368 5.368 19 C 0.300 3.700 20 O -0.409 6.409 21 C -0.135 4.135 22 C -0.151 4.151 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.158 4.158 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.034 0.966 36 H 0.224 0.776 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.552 6.150 -4.287 16.369 hybrid contribution 0.435 -0.197 -0.180 0.510 sum -14.117 5.954 -4.467 15.959 Atomic orbital electron populations 1.21841 0.96076 1.01477 1.00652 1.21301 0.94512 0.99622 0.95682 0.91596 1.22069 0.98957 1.00018 0.95474 1.20953 0.90831 0.96425 0.90194 1.43967 1.48109 1.39845 0.99211 1.19163 1.09785 1.03225 1.06414 0.91605 1.25016 0.97158 0.97385 0.99664 1.70020 1.37548 1.29037 1.17743 0.86305 0.78672 0.83879 0.78009 1.21270 1.21789 1.20417 1.21098 0.86640 0.97347 0.90974 1.21952 0.98221 0.96322 0.81640 0.90178 1.46035 1.66169 1.13907 1.10724 1.20423 0.77817 0.87299 0.84499 1.90704 1.49434 1.16542 1.84221 1.21938 0.97710 0.99556 0.94327 1.22339 0.93553 1.01047 0.98195 1.22498 0.99353 0.97825 0.96405 1.22370 0.95800 0.97580 1.00356 1.22167 0.96568 1.01130 0.95921 0.93019 0.93222 0.93227 0.92692 0.92160 0.96473 0.92655 0.93695 0.88712 0.96646 0.77625 0.88714 0.91188 0.91137 0.91411 0.91615 0.91773 0.91635 0.91665 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.02 37.16 0.34 -1.54 16 2 C -0.09 -1.49 2.27 -90.57 -0.21 -1.69 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 5 C 0.14 2.99 6.52 -3.72 -0.02 2.97 16 6 N -0.59 -15.16 2.99 -172.33 -0.52 -15.68 16 7 C -0.26 -7.31 9.58 -15.06 -0.14 -7.45 16 8 H 0.07 1.84 7.89 -52.48 -0.41 1.42 16 9 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 10 N -0.90 -27.21 11.19 55.49 0.62 -26.59 16 11 Si 0.90 22.85 29.59 -169.99 -5.03 17.82 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 C 0.17 4.12 4.89 -3.71 -0.02 4.10 16 16 C 0.12 2.44 2.06 -67.81 -0.14 2.30 16 17 H 0.08 1.82 7.58 -51.93 -0.39 1.43 16 18 N -0.72 -11.73 4.32 -53.69 -0.23 -11.96 16 19 C 0.51 9.03 6.96 -10.99 -0.08 8.95 16 20 O -0.53 -12.01 14.87 5.55 0.08 -11.93 16 21 C -0.11 -1.47 3.29 -90.66 -0.30 -1.77 16 22 C -0.11 -1.15 6.31 -25.08 -0.16 -1.31 16 23 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 24 C -0.12 -1.30 6.83 -25.04 -0.17 -1.47 16 25 C -0.12 -1.57 6.40 -25.59 -0.16 -1.73 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.58 7.35 -51.93 -0.38 0.20 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 33 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.09 2.77 6.04 -51.93 -0.31 2.46 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.39 5.08 8.30 -40.82 -0.34 4.74 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.49 6.39 -51.93 -0.33 1.15 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -32.76 347.23 -9.35 -42.11 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.05 Total: 3.13 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.46 Total: -2.13 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.13 Total: -54.23 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.76 -9.35 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964612041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.688 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds