Wall clock time and date at job start Tue Mar 31 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.45773 * 2 1 4 4 C 1.53041 * 109.45833 * 119.96691 * 2 1 3 5 5 C 1.53190 * 109.31413 * 181.37409 * 4 2 1 6 6 N 1.46929 * 108.77444 * 305.36692 * 5 4 2 7 7 C 1.36939 * 120.63196 * 233.58673 * 6 5 4 8 8 H 1.07996 * 120.00150 * 152.05880 * 7 6 5 9 9 C 1.38811 * 119.99797 * 331.78731 * 7 6 5 10 10 N 1.31626 * 119.99948 * 342.86643 * 9 7 6 11 11 Si 1.86797 * 120.00115 * 162.87096 * 9 7 6 12 12 H 1.48492 * 109.47205 * 94.32929 * 11 9 7 13 13 H 1.48498 * 109.47159 * 214.33198 * 11 9 7 14 14 H 1.48506 * 109.46903 * 334.32869 * 11 9 7 15 15 C 1.46931 * 118.73693 * 53.85901 * 6 5 4 16 16 C 1.53038 * 109.45124 * 240.03062 * 2 1 3 17 17 H 1.09000 * 109.49509 * 58.64212 * 16 2 1 18 18 N 1.46499 * 109.49911 * 298.57487 * 16 2 1 19 19 C 1.34765 * 120.00034 * 154.99912 * 18 16 2 20 20 O 1.21286 * 120.00462 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00253 * 180.02562 * 19 18 16 22 22 C 1.54265 * 110.03103 * 297.91134 * 21 19 18 23 23 C 1.54963 * 104.15954 * 217.13758 * 22 21 19 24 24 C 1.54884 * 102.77936 * 37.88106 * 23 22 21 25 25 C 1.53872 * 110.03803 * 180.69173 * 21 19 18 26 26 H 1.09003 * 109.47690 * 300.03309 * 1 2 3 27 27 H 1.09008 * 109.46544 * 60.02778 * 1 2 3 28 28 H 1.08997 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.49340 * 61.41922 * 4 2 1 30 30 H 1.08998 * 109.49687 * 301.32989 * 4 2 1 31 31 H 1.08996 * 109.58630 * 185.58128 * 5 4 2 32 32 H 1.08998 * 109.58610 * 65.15194 * 5 4 2 33 33 H 0.96998 * 120.00213 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.58281 * 65.92984 * 15 6 5 35 35 H 1.08998 * 109.58267 * 186.35259 * 15 6 5 36 36 H 0.97005 * 119.99573 * 335.00116 * 18 16 2 37 37 H 1.09005 * 110.01784 * 59.29601 * 21 19 18 38 38 H 1.09001 * 110.48425 * 335.77861 * 22 21 19 39 39 H 1.08999 * 110.49079 * 98.42361 * 22 21 19 40 40 H 1.09006 * 110.72012 * 279.56904 * 23 22 21 41 41 H 1.08998 * 110.92491 * 156.29689 * 23 22 21 42 42 H 1.09000 * 110.48932 * 203.40237 * 24 23 22 43 43 H 1.09002 * 110.48584 * 80.76859 * 24 23 22 44 44 H 1.09000 * 110.03553 * 238.57309 * 25 21 19 45 45 H 1.09011 * 110.02859 * 359.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5713 -0.6889 1.2642 6 7 4.0677 -1.2493 -0.0001 7 6 4.9760 -2.2740 -0.0002 8 1 5.0061 -2.9689 -0.8263 9 6 5.8619 -2.4162 1.0590 10 7 6.0703 -1.4106 1.8822 11 14 6.7584 -4.0348 1.3159 12 1 8.0875 -3.9745 0.6566 13 1 6.9376 -4.2759 2.7702 14 1 5.9624 -5.1407 0.7252 15 6 3.5754 -0.6852 -1.2644 16 6 2.0396 -0.7208 -1.2501 17 1 1.6566 -0.2210 -2.1398 18 7 1.5797 -2.1117 -1.2343 19 6 1.4509 -2.7920 -2.3904 20 8 1.7163 -2.2531 -3.4441 21 6 0.9772 -4.2225 -2.3742 22 6 1.9752 -5.1008 -1.5917 23 6 1.9961 -6.4389 -2.3730 24 6 1.9030 -5.9759 -3.8481 25 6 0.9309 -4.7788 -3.8081 26 1 -0.3634 0.5143 0.8897 27 1 -0.3633 0.5135 -0.8903 28 1 -0.3633 -1.0276 0.0005 29 1 1.6975 -1.7556 1.2384 30 1 1.6573 -0.2207 2.1398 31 1 3.9416 -1.2849 2.0983 32 1 3.9144 0.3405 1.3672 33 1 6.6890 -1.5100 2.6226 34 1 3.9189 0.3446 -1.3632 35 1 3.9483 -1.2787 -2.0990 36 1 1.3677 -2.5428 -0.3915 37 1 -0.0110 -4.2832 -1.9181 38 1 2.9651 -4.6447 -1.5902 39 1 1.6256 -5.2593 -0.5715 40 1 1.1370 -7.0547 -2.1064 41 1 2.9263 -6.9788 -2.1955 42 1 1.5012 -6.7730 -4.4735 43 1 2.8812 -5.6610 -4.2116 44 1 -0.0796 -5.1102 -4.0477 45 1 1.2506 -4.0139 -4.5159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964612043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:40 Heat of formation + Delta-G solvation = -41.027290 kcal Electronic energy + Delta-G solvation = -23882.406075 eV Core-core repulsion = 20706.104361 eV Total energy + Delta-G solvation = -3176.301713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.98420 -38.12012 -36.51871 -34.19511 -32.68386 -31.07957 -29.81744 -28.61356 -28.40571 -27.11582 -24.09245 -22.55231 -21.59373 -21.07578 -20.56078 -19.27795 -18.64546 -17.23274 -16.59319 -15.73716 -15.08640 -14.73654 -14.65748 -14.43213 -13.88675 -13.60184 -13.46797 -13.26500 -13.10760 -12.75035 -12.56455 -12.00552 -11.63272 -11.56914 -11.32555 -11.20489 -11.14078 -10.99701 -10.94110 -10.82149 -10.72506 -10.59881 -10.41887 -10.35472 -10.23049 -9.95589 -9.61987 -9.46126 -9.23246 -8.60260 -8.32854 -6.63037 -5.78725 -3.20277 3.12293 3.35811 3.43596 3.44955 3.72560 4.49362 4.62732 4.75758 4.92806 5.17038 5.30466 5.35272 5.39279 5.43199 5.46851 5.56854 5.57758 5.65729 5.75632 5.77095 5.91696 5.96309 5.99470 6.03916 6.05332 6.18459 6.21398 6.24064 6.33420 6.43656 6.45050 6.47605 6.51073 6.60224 6.67145 6.82110 6.86880 7.16460 7.32502 7.63230 7.80714 8.07513 8.45438 8.74942 9.22134 9.85204 10.42492 11.29518 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.008008 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.746379 B = 3495.857761 C = 5126.140209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.169 3.831 6 N -0.586 5.586 7 C -0.243 4.243 8 H 0.062 0.938 9 C 0.002 3.998 10 N -0.903 5.903 11 Si 0.898 3.102 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.135 3.865 16 C 0.134 3.866 17 H 0.075 0.925 18 N -0.698 5.698 19 C 0.518 3.482 20 O -0.554 6.554 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.117 4.117 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.018 0.982 33 H 0.252 0.748 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.518 -4.476 -4.205 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.043 3.957 6 N -0.308 5.308 7 C -0.373 4.373 8 H 0.080 0.920 9 C -0.197 4.197 10 N -0.548 5.548 11 Si 0.728 3.272 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.008 3.992 16 C 0.028 3.972 17 H 0.093 0.907 18 N -0.348 5.348 19 C 0.304 3.696 20 O -0.433 6.433 21 C -0.134 4.134 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.155 4.155 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.202 -4.069 -4.802 13.730 hybrid contribution 0.472 -0.936 0.745 1.286 sum -11.730 -5.004 -4.057 13.383 Atomic orbital electron populations 1.21844 0.96079 1.01278 1.00875 1.21314 0.94518 0.99842 0.95625 0.90557 1.22256 1.00934 0.98884 0.95473 1.20793 0.87180 0.97312 0.90396 1.44000 1.48287 1.39404 0.99139 1.19113 1.09401 1.02659 1.06155 0.92000 1.25019 0.97160 0.97275 1.00208 1.70035 1.37502 1.28833 1.18409 0.86354 0.79807 0.84012 0.77074 1.21573 1.21659 1.20421 1.21375 0.90468 0.96807 0.90595 1.21590 0.97138 0.81172 0.97288 0.90674 1.45867 1.66601 1.13757 1.08541 1.20424 0.77341 0.88007 0.83842 1.90613 1.51629 1.70023 1.31036 1.21911 1.00379 0.92557 0.98517 1.22377 0.99912 0.94774 0.98257 1.22499 1.01571 0.96896 0.95120 1.22351 0.99907 0.97235 0.96602 1.22130 0.99299 0.98264 0.95759 0.93061 0.93316 0.93107 0.93054 0.92982 0.89492 0.96420 0.93746 0.95786 0.92333 0.76630 0.89223 0.90066 0.91098 0.91721 0.91444 0.91949 0.91500 0.92024 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.05 37.16 0.34 -1.51 16 2 C -0.09 -1.47 2.48 -90.58 -0.22 -1.70 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 4 C -0.14 -2.36 5.20 -26.61 -0.14 -2.49 16 5 C 0.17 3.81 5.30 -3.71 -0.02 3.79 16 6 N -0.59 -14.05 2.90 -172.06 -0.50 -14.55 16 7 C -0.24 -6.50 9.58 -15.06 -0.14 -6.65 16 8 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 9 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 10 N -0.90 -25.74 11.21 55.49 0.62 -25.12 16 11 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.14 2.90 6.16 -3.48 -0.02 2.88 16 16 C 0.13 2.37 2.24 -67.59 -0.15 2.21 16 17 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 18 N -0.70 -11.51 4.19 -53.48 -0.22 -11.73 16 19 C 0.52 8.78 6.97 -10.99 -0.08 8.70 16 20 O -0.55 -11.17 14.87 5.55 0.08 -11.09 16 21 C -0.11 -1.52 3.29 -90.65 -0.30 -1.82 16 22 C -0.12 -1.58 6.30 -25.03 -0.16 -1.74 16 23 C -0.12 -1.46 6.91 -24.70 -0.17 -1.63 16 24 C -0.12 -1.48 6.83 -25.08 -0.17 -1.65 16 25 C -0.12 -1.51 6.40 -25.62 -0.16 -1.67 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 28 H 0.05 0.64 7.54 -51.93 -0.39 0.24 16 29 H 0.05 0.87 6.40 -51.92 -0.33 0.54 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 36 H 0.40 6.19 6.63 -40.82 -0.27 5.92 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.38 7.85 -51.93 -0.41 0.97 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.36 6.39 -51.92 -0.33 1.03 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -29.54 344.14 -9.25 -38.79 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.90 Total: 5.41 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.49 Total: -3.31 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.10 Total: -51.40 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.54 -9.25 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964612043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.237 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds