Wall clock time and date at job start Tue Mar 31 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.45773 * 2 1 4 4 C 1.53041 * 109.45833 * 119.96691 * 2 1 3 5 5 C 1.53190 * 109.31413 * 181.37409 * 4 2 1 6 6 N 1.46929 * 108.77444 * 305.36692 * 5 4 2 7 7 C 1.36939 * 120.63196 * 233.58673 * 6 5 4 8 8 H 1.07996 * 120.00150 * 152.05880 * 7 6 5 9 9 C 1.38811 * 119.99797 * 331.78731 * 7 6 5 10 10 N 1.31626 * 119.99948 * 342.86643 * 9 7 6 11 11 Si 1.86797 * 120.00115 * 162.87096 * 9 7 6 12 12 H 1.48492 * 109.47205 * 94.32929 * 11 9 7 13 13 H 1.48498 * 109.47159 * 214.33198 * 11 9 7 14 14 H 1.48506 * 109.46903 * 334.32869 * 11 9 7 15 15 C 1.46931 * 118.73693 * 53.85901 * 6 5 4 16 16 C 1.53038 * 109.45124 * 240.03062 * 2 1 3 17 17 H 1.09000 * 109.49509 * 58.64212 * 16 2 1 18 18 N 1.46499 * 109.49911 * 298.57487 * 16 2 1 19 19 C 1.34765 * 120.00034 * 154.99912 * 18 16 2 20 20 O 1.21286 * 120.00462 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00253 * 180.02562 * 19 18 16 22 22 C 1.54265 * 110.03103 * 297.91134 * 21 19 18 23 23 C 1.54963 * 104.15954 * 217.13758 * 22 21 19 24 24 C 1.54884 * 102.77936 * 37.88106 * 23 22 21 25 25 C 1.53872 * 110.03803 * 180.69173 * 21 19 18 26 26 H 1.09003 * 109.47690 * 300.03309 * 1 2 3 27 27 H 1.09008 * 109.46544 * 60.02778 * 1 2 3 28 28 H 1.08997 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.49340 * 61.41922 * 4 2 1 30 30 H 1.08998 * 109.49687 * 301.32989 * 4 2 1 31 31 H 1.08996 * 109.58630 * 185.58128 * 5 4 2 32 32 H 1.08998 * 109.58610 * 65.15194 * 5 4 2 33 33 H 0.96998 * 120.00213 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.58281 * 65.92984 * 15 6 5 35 35 H 1.08998 * 109.58267 * 186.35259 * 15 6 5 36 36 H 0.97005 * 119.99573 * 335.00116 * 18 16 2 37 37 H 1.09005 * 110.01784 * 59.29601 * 21 19 18 38 38 H 1.09001 * 110.48425 * 335.77861 * 22 21 19 39 39 H 1.08999 * 110.49079 * 98.42361 * 22 21 19 40 40 H 1.09006 * 110.72012 * 279.56904 * 23 22 21 41 41 H 1.08998 * 110.92491 * 156.29689 * 23 22 21 42 42 H 1.09000 * 110.48932 * 203.40237 * 24 23 22 43 43 H 1.09002 * 110.48584 * 80.76859 * 24 23 22 44 44 H 1.09000 * 110.03553 * 238.57309 * 25 21 19 45 45 H 1.09011 * 110.02859 * 359.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5713 -0.6889 1.2642 6 7 4.0677 -1.2493 -0.0001 7 6 4.9760 -2.2740 -0.0002 8 1 5.0061 -2.9689 -0.8263 9 6 5.8619 -2.4162 1.0590 10 7 6.0703 -1.4106 1.8822 11 14 6.7584 -4.0348 1.3159 12 1 8.0875 -3.9745 0.6566 13 1 6.9376 -4.2759 2.7702 14 1 5.9624 -5.1407 0.7252 15 6 3.5754 -0.6852 -1.2644 16 6 2.0396 -0.7208 -1.2501 17 1 1.6566 -0.2210 -2.1398 18 7 1.5797 -2.1117 -1.2343 19 6 1.4509 -2.7920 -2.3904 20 8 1.7163 -2.2531 -3.4441 21 6 0.9772 -4.2225 -2.3742 22 6 1.9752 -5.1008 -1.5917 23 6 1.9961 -6.4389 -2.3730 24 6 1.9030 -5.9759 -3.8481 25 6 0.9309 -4.7788 -3.8081 26 1 -0.3634 0.5143 0.8897 27 1 -0.3633 0.5135 -0.8903 28 1 -0.3633 -1.0276 0.0005 29 1 1.6975 -1.7556 1.2384 30 1 1.6573 -0.2207 2.1398 31 1 3.9416 -1.2849 2.0983 32 1 3.9144 0.3405 1.3672 33 1 6.6890 -1.5100 2.6226 34 1 3.9189 0.3446 -1.3632 35 1 3.9483 -1.2787 -2.0990 36 1 1.3677 -2.5428 -0.3915 37 1 -0.0110 -4.2832 -1.9181 38 1 2.9651 -4.6447 -1.5902 39 1 1.6256 -5.2593 -0.5715 40 1 1.1370 -7.0547 -2.1064 41 1 2.9263 -6.9788 -2.1955 42 1 1.5012 -6.7730 -4.4735 43 1 2.8812 -5.6610 -4.2116 44 1 -0.0796 -5.1102 -4.0477 45 1 1.2506 -4.0139 -4.5159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964612043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:39 Heat of formation + Delta-G solvation = -57.810612 kcal Electronic energy + Delta-G solvation = -23883.133854 eV Core-core repulsion = 20706.104361 eV Total energy + Delta-G solvation = -3177.029493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34679 -39.53168 -37.77188 -35.97493 -34.12050 -32.98474 -31.26465 -29.81685 -29.49296 -28.72023 -25.85359 -24.08735 -22.99609 -22.68094 -21.55499 -20.47056 -20.23724 -18.67060 -18.32180 -17.00597 -16.75285 -16.31047 -15.99360 -15.76294 -15.60808 -15.07284 -14.81707 -14.72042 -14.31815 -14.18740 -14.08996 -13.51011 -13.24865 -13.00379 -12.82832 -12.66282 -12.53716 -12.40842 -12.26964 -12.12988 -11.99988 -11.92620 -11.90366 -11.66393 -11.61807 -11.38785 -11.26852 -11.08714 -10.62265 -10.55175 -9.92559 -8.62525 -7.87204 -5.31747 1.42930 1.45191 1.54554 1.77384 2.41022 2.50182 3.26809 3.58133 3.67158 3.71733 3.80116 3.90611 4.02368 4.11121 4.30927 4.48427 4.49355 4.56868 4.59428 4.63149 4.71099 4.76948 4.78895 4.81437 4.83336 5.00322 5.01534 5.01785 5.07827 5.08754 5.21529 5.25919 5.27355 5.28932 5.42617 5.46579 5.48588 5.52873 5.64887 5.72451 5.79334 6.38738 6.73743 7.15894 7.40876 7.85616 8.37929 9.17996 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.008008 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.746379 B = 3495.857761 C = 5126.140209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.122 4.122 5 C 0.174 3.826 6 N -0.596 5.596 7 C -0.248 4.248 8 H 0.051 0.949 9 C -0.045 4.045 10 N -0.932 5.932 11 Si 0.958 3.042 12 H -0.293 1.293 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.136 3.864 16 C 0.145 3.855 17 H 0.075 0.925 18 N -0.692 5.692 19 C 0.511 3.489 20 O -0.592 6.592 21 C -0.106 4.106 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.116 4.116 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.056 0.944 32 H -0.006 1.006 33 H 0.250 0.750 34 H 0.016 0.984 35 H 0.030 0.970 36 H 0.405 0.595 37 H 0.124 0.876 38 H 0.038 0.962 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.232 -5.989 -3.779 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.161 4.161 5 C 0.049 3.951 6 N -0.319 5.319 7 C -0.378 4.378 8 H 0.068 0.932 9 C -0.241 4.241 10 N -0.578 5.578 11 Si 0.786 3.214 12 H -0.221 1.221 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.009 3.991 16 C 0.038 3.962 17 H 0.093 0.907 18 N -0.342 5.342 19 C 0.299 3.701 20 O -0.473 6.473 21 C -0.127 4.127 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.161 4.161 25 C -0.154 4.154 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.012 0.988 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.048 0.952 36 H 0.242 0.758 37 H 0.142 0.858 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.945 -5.588 -4.375 16.544 hybrid contribution 1.388 -0.407 0.547 1.547 sum -13.556 -5.996 -3.828 15.309 Atomic orbital electron populations 1.21748 0.92890 1.02235 1.02218 1.21252 0.96980 0.99016 0.93307 0.90717 1.22063 0.96478 1.00083 0.97448 1.20661 0.90855 0.94964 0.88607 1.44156 1.48251 1.39160 1.00364 1.19240 1.09807 1.03038 1.05763 0.93160 1.25671 0.98168 1.00059 1.00201 1.70176 1.38330 1.30462 1.18866 0.85405 0.78355 0.80820 0.76773 1.22055 1.21462 1.19292 1.21402 0.93570 0.95468 0.88696 1.21339 0.93820 0.82406 0.98609 0.90675 1.45822 1.66113 1.13305 1.08945 1.21135 0.76467 0.89295 0.83173 1.90600 1.53182 1.71165 1.32358 1.21989 1.01674 0.89689 0.99331 1.22348 0.97682 0.95711 0.99628 1.22504 1.02703 0.95969 0.94289 1.22357 0.98743 0.97635 0.97345 1.22136 1.00970 0.97724 0.94556 0.91147 0.92610 0.92334 0.92239 0.90534 0.92571 0.98812 0.94122 0.96578 0.95162 0.75802 0.85834 0.94305 0.89590 0.88889 0.91758 0.89452 0.93760 0.89230 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.05 71.98 0.65 -2.31 16 2 C -0.09 -2.56 2.48 -10.77 -0.03 -2.58 16 3 H 0.07 2.26 8.14 -2.38 -0.02 2.25 16 4 C -0.12 -4.01 5.20 30.67 0.16 -3.85 16 5 C 0.17 8.00 5.30 86.36 0.46 8.46 16 6 N -0.60 -29.45 2.90 -698.26 -2.03 -31.48 16 7 C -0.25 -13.66 9.58 84.03 0.80 -12.85 16 8 H 0.05 2.84 7.89 -2.91 -0.02 2.82 16 9 C -0.05 -2.53 4.91 84.86 0.42 -2.11 16 10 N -0.93 -54.58 11.21 21.65 0.24 -54.34 16 11 Si 0.96 44.87 29.59 68.60 2.03 46.90 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 C 0.14 6.05 6.16 86.51 0.53 6.58 16 16 C 0.14 5.06 2.24 45.21 0.10 5.16 16 17 H 0.08 2.67 7.58 -2.39 -0.02 2.65 16 18 N -0.69 -22.20 4.19 -441.49 -1.85 -24.06 16 19 C 0.51 17.08 6.97 87.66 0.61 17.70 16 20 O -0.59 -24.28 14.87 -3.05 -0.05 -24.32 16 21 C -0.11 -2.65 3.29 -10.82 -0.04 -2.68 16 22 C -0.12 -3.00 6.30 31.69 0.20 -2.80 16 23 C -0.12 -2.48 6.91 31.91 0.22 -2.26 16 24 C -0.12 -2.74 6.83 31.66 0.22 -2.52 16 25 C -0.12 -2.79 6.40 31.31 0.20 -2.59 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.06 1.22 7.54 -2.39 -0.02 1.21 16 29 H 0.06 1.88 6.40 -2.38 -0.02 1.87 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 2.93 6.07 -2.39 -0.01 2.91 16 32 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.03 1.48 7.93 -2.39 -0.02 1.46 16 36 H 0.41 11.84 6.63 -92.70 -0.61 11.23 16 37 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.04 1.33 7.85 -2.39 -0.02 1.31 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 1.82 6.39 -2.38 -0.02 1.81 16 Total: -1.00 -66.94 344.14 3.20 -63.74 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.34 Total: 22.23 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.51 Total: 1.33 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -3.64 Total: -109.87 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.32 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.94 3.20 -63.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964612043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.930 kcal (2) G-P(sol) polarization free energy of solvation -66.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds