Wall clock time and date at job start Tue Mar 31 2020 01:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 115.56294 * 2 1 4 4 C 1.53066 * 117.51802 * 214.29873 * 2 1 3 5 5 C 1.52996 * 117.50281 * 145.68545 * 2 1 3 6 6 H 1.09008 * 117.49956 * 215.00540 * 5 2 1 7 7 C 1.52998 * 117.49962 * 0.02562 * 5 2 1 8 8 C 1.50702 * 109.47391 * 184.91464 * 7 5 2 9 9 O 1.21276 * 119.99772 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99741 * 180.27661 * 8 7 5 11 11 C 1.46921 * 120.63306 * 359.43968 * 10 8 7 12 12 C 1.53628 * 108.54422 * 126.36789 * 11 10 8 13 13 C 1.53050 * 109.23948 * 54.85725 * 12 11 10 14 14 N 1.46494 * 109.45952 * 178.49350 * 13 12 11 15 15 C 1.46502 * 120.00394 * 60.06446 * 14 13 12 16 16 C 1.36945 * 119.99825 * 240.06939 * 14 13 12 17 17 H 1.08001 * 119.99753 * 22.98883 * 16 14 13 18 18 C 1.38807 * 119.99990 * 202.99228 * 16 14 13 19 19 N 1.31620 * 120.00274 * 11.64175 * 18 16 14 20 20 Si 1.86807 * 119.99759 * 191.64461 * 18 16 14 21 21 H 1.48490 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46821 * 119.99964 * 20 18 16 23 23 H 1.48498 * 109.46773 * 239.99610 * 20 18 16 24 24 C 1.53044 * 109.53792 * 298.51327 * 13 12 11 25 25 C 1.46929 * 120.62752 * 179.72094 * 10 8 7 26 26 H 1.09000 * 109.46908 * 274.30895 * 1 2 3 27 27 H 1.08990 * 109.47418 * 34.31527 * 1 2 3 28 28 H 1.09004 * 109.46643 * 154.31356 * 1 2 3 29 29 H 1.09008 * 117.50135 * 145.03733 * 4 2 1 30 30 H 1.09003 * 117.53625 * 359.97438 * 4 2 1 31 31 H 1.08999 * 109.47133 * 64.91037 * 7 5 2 32 32 H 1.09002 * 109.47227 * 304.91309 * 7 5 2 33 33 H 1.08997 * 109.58946 * 246.19938 * 11 10 8 34 34 H 1.08996 * 109.58700 * 6.63152 * 11 10 8 35 35 H 1.08997 * 109.63710 * 294.87080 * 12 11 10 36 36 H 1.08993 * 109.46194 * 174.73999 * 12 11 10 37 37 H 1.08995 * 109.45671 * 58.53020 * 13 12 11 38 38 H 1.09004 * 109.46795 * 93.84455 * 15 14 13 39 39 H 1.08996 * 109.47272 * 213.84465 * 15 14 13 40 40 H 1.08992 * 109.46695 * 333.84543 * 15 14 13 41 41 H 0.96996 * 120.00399 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.49574 * 301.41617 * 24 13 12 43 43 H 1.08997 * 109.52434 * 181.33399 * 24 13 12 44 44 H 1.09004 * 109.58491 * 353.37337 * 25 10 8 45 45 H 1.08998 * 109.58361 * 113.79587 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1214 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 3.1714 -0.8748 1.2687 7 6 1.3590 -2.1564 1.4711 8 6 2.2304 -3.0983 2.2614 9 8 3.4347 -2.9556 2.2597 10 7 1.6717 -4.1028 2.9652 11 6 0.2139 -4.2850 2.9815 12 6 -0.1025 -5.7302 2.5675 13 6 0.6613 -6.6944 3.4781 14 7 0.3351 -8.0745 3.1106 15 6 0.6248 -8.5609 1.7594 16 6 -0.2409 -8.9100 4.0302 17 1 -0.7870 -8.4985 4.8661 18 6 -0.1227 -10.2857 3.8879 19 7 0.7237 -10.7866 3.0132 20 14 -1.1651 -11.4262 4.9377 21 1 -2.0295 -10.6198 5.8363 22 1 -2.0144 -12.2697 4.0588 23 1 -0.2795 -12.2959 5.7529 24 6 2.1661 -6.4662 3.3177 25 6 2.5086 -5.0328 3.7356 26 1 -0.3633 0.0772 1.0248 27 1 -0.3634 0.8487 -0.5793 28 1 -0.3633 -0.9262 -0.4455 29 1 3.1725 -0.8756 -1.2679 30 1 1.6128 -1.8598 -1.2681 31 1 0.7940 -2.7204 0.7290 32 1 0.6684 -1.6488 2.1446 33 1 -0.1665 -4.0981 3.9857 34 1 -0.2488 -3.5924 2.2784 35 1 0.2009 -5.8896 1.5328 36 1 -1.1732 -5.9095 2.6643 37 1 0.3758 -6.5177 4.5150 38 1 1.6013 -9.0452 1.7492 39 1 -0.1394 -9.2778 1.4596 40 1 0.6283 -7.7215 1.0642 41 1 0.8061 -11.7479 2.9135 42 1 2.4482 -6.6186 2.2758 43 1 2.7104 -7.1690 3.9485 44 1 3.5604 -4.8337 3.5303 45 1 2.3115 -4.9055 4.8000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985631235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:28 Heat of formation + Delta-G solvation = 2.705582 kcal Electronic energy + Delta-G solvation = -22656.703426 eV Core-core repulsion = 19482.298112 eV Total energy + Delta-G solvation = -3174.405314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.14340 -38.23084 -37.18896 -35.03034 -32.28214 -31.19181 -29.96062 -29.35350 -28.20714 -26.00274 -24.79006 -22.90849 -22.28273 -21.61205 -20.30452 -19.20806 -18.43438 -17.13521 -16.75662 -16.13446 -15.39641 -15.08418 -15.02010 -14.10589 -13.91133 -13.77307 -13.59418 -13.34934 -13.27671 -12.96438 -12.67714 -12.38414 -12.33718 -12.03682 -11.72807 -11.65599 -11.44203 -11.31986 -10.92714 -10.85961 -10.79392 -10.38770 -10.21424 -10.11556 -10.08004 -9.99571 -9.85474 -9.65682 -9.50994 -8.56799 -8.41629 -6.74819 -5.72225 -3.18794 2.76135 3.13288 3.36676 3.43839 3.45700 3.60895 4.45659 4.47565 4.49565 4.67874 4.83195 5.02635 5.07823 5.23983 5.30952 5.32871 5.39720 5.44490 5.47057 5.51510 5.57206 5.62358 5.64434 5.72789 5.78838 5.82916 5.91048 6.04705 6.07085 6.15887 6.18937 6.27039 6.39096 6.54849 6.64732 6.80456 6.98922 7.02311 7.39821 7.58821 7.74216 7.80857 8.32274 8.40298 9.24032 9.87557 10.37078 11.32535 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033520 B = 0.003467 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.120725 B = 8074.543144 C = 8266.426189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.157 4.157 3 H 0.103 0.897 4 C -0.174 4.174 5 C -0.135 4.135 6 H 0.117 0.883 7 C -0.108 4.108 8 C 0.515 3.485 9 O -0.549 6.549 10 N -0.608 5.608 11 C 0.109 3.891 12 C -0.148 4.148 13 C 0.179 3.821 14 N -0.597 5.597 15 C 0.165 3.835 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.001 3.999 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 C -0.144 4.144 25 C 0.113 3.887 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.042 0.958 40 H -0.004 1.004 41 H 0.251 0.749 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 19.100 -4.183 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.175 4.175 3 H 0.121 0.879 4 C -0.211 4.211 5 C -0.153 4.153 6 H 0.135 0.865 7 C -0.147 4.147 8 C 0.304 3.696 9 O -0.427 6.427 10 N -0.341 5.341 11 C -0.014 4.014 12 C -0.188 4.188 13 C 0.071 3.929 14 N -0.318 5.318 15 C 0.020 3.980 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.552 5.552 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.184 4.184 25 C -0.009 4.009 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.015 0.985 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.745 18.950 -4.223 19.429 hybrid contribution -0.525 -0.905 0.469 1.147 sum -1.270 18.044 -3.754 18.474 Atomic orbital electron populations 1.21362 0.92903 1.02001 1.01831 1.22424 0.95350 0.94482 1.05239 0.87925 1.23176 1.02418 1.01305 0.94230 1.22143 1.01068 0.98244 0.93843 0.86544 1.21206 0.98006 0.95943 0.99595 1.20533 0.88749 0.81222 0.79142 1.90650 1.15202 1.72921 1.63930 1.48194 1.07765 1.29387 1.48732 1.21902 0.79493 0.98333 1.01693 1.22556 1.01593 0.93209 1.01423 1.20279 0.90864 0.85419 0.96357 1.43965 1.71287 1.07046 1.09514 1.20726 1.00168 0.93749 0.83316 1.19269 1.25924 0.87360 1.05859 0.91400 1.25037 0.98370 0.97267 0.99018 1.70079 1.36272 1.11178 1.37696 0.86196 0.79744 0.80973 0.79694 1.20349 1.21683 1.21770 1.22494 1.00050 0.93921 1.01960 1.21682 0.95663 0.89091 0.94505 0.92135 0.92280 0.92384 0.88886 0.88787 0.88852 0.88705 0.91356 0.90438 0.91945 0.90825 0.91953 0.95514 0.93949 0.98509 0.93835 0.92304 0.90692 0.89719 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.16 -1.33 6.41 -90.59 -0.58 -1.91 16 3 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.17 -1.66 9.82 -26.70 -0.26 -1.93 16 5 C -0.13 -1.43 5.41 -90.62 -0.49 -1.92 16 6 H 0.12 1.45 7.31 -51.92 -0.38 1.07 16 7 C -0.11 -1.14 3.41 -27.88 -0.09 -1.23 16 8 C 0.52 7.46 7.70 -10.98 -0.08 7.37 16 9 O -0.55 -9.84 14.98 5.56 0.08 -9.76 16 10 N -0.61 -8.65 2.97 -172.50 -0.51 -9.16 16 11 C 0.11 1.34 6.37 -3.49 -0.02 1.32 16 12 C -0.15 -2.32 5.34 -26.38 -0.14 -2.46 16 13 C 0.18 3.47 2.55 -67.89 -0.17 3.30 16 14 N -0.60 -14.51 2.81 -173.44 -0.49 -14.99 16 15 C 0.16 4.03 8.03 59.85 0.48 4.51 16 16 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16 17 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 18 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 19 N -0.91 -26.33 10.64 55.49 0.59 -25.73 16 20 Si 0.90 21.61 29.57 -169.99 -5.03 16.59 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 C -0.14 -2.63 5.34 -26.61 -0.14 -2.77 16 25 C 0.11 1.76 6.43 -3.71 -0.02 1.74 16 26 H 0.06 0.40 7.84 -51.93 -0.41 0.00 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 29 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.09 0.86 7.94 -51.93 -0.41 0.45 16 31 H 0.09 0.90 7.43 -51.93 -0.39 0.52 16 32 H 0.09 0.82 7.56 -51.93 -0.39 0.43 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 35 H 0.06 1.04 6.72 -51.93 -0.35 0.69 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 38 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 39 H 0.04 1.12 7.22 -51.93 -0.37 0.74 16 40 H 0.00 -0.08 6.46 -51.93 -0.34 -0.41 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.08 1.39 7.01 -51.93 -0.36 1.03 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -30.96 348.44 -9.34 -40.31 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.82 Total: -0.93 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.43 Total: -1.57 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.41 Total: -49.89 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.96 -9.34 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985631235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.015 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds