Wall clock time and date at job start Tue Mar 31 2020 01:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 115.56294 * 2 1 4 4 C 1.53066 * 117.51802 * 214.29873 * 2 1 3 5 5 C 1.52996 * 117.50281 * 145.68545 * 2 1 3 6 6 H 1.09008 * 117.49956 * 215.00540 * 5 2 1 7 7 C 1.52998 * 117.49962 * 0.02562 * 5 2 1 8 8 C 1.50702 * 109.47391 * 184.91464 * 7 5 2 9 9 O 1.21276 * 119.99772 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99741 * 180.27661 * 8 7 5 11 11 C 1.46921 * 120.63306 * 359.43968 * 10 8 7 12 12 C 1.53628 * 108.54422 * 126.36789 * 11 10 8 13 13 C 1.53050 * 109.23948 * 54.85725 * 12 11 10 14 14 N 1.46494 * 109.45952 * 178.49350 * 13 12 11 15 15 C 1.46502 * 120.00394 * 60.06446 * 14 13 12 16 16 C 1.36945 * 119.99825 * 240.06939 * 14 13 12 17 17 H 1.08001 * 119.99753 * 22.98883 * 16 14 13 18 18 C 1.38807 * 119.99990 * 202.99228 * 16 14 13 19 19 N 1.31620 * 120.00274 * 11.64175 * 18 16 14 20 20 Si 1.86807 * 119.99759 * 191.64461 * 18 16 14 21 21 H 1.48490 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46821 * 119.99964 * 20 18 16 23 23 H 1.48498 * 109.46773 * 239.99610 * 20 18 16 24 24 C 1.53044 * 109.53792 * 298.51327 * 13 12 11 25 25 C 1.46929 * 120.62752 * 179.72094 * 10 8 7 26 26 H 1.09000 * 109.46908 * 274.30895 * 1 2 3 27 27 H 1.08990 * 109.47418 * 34.31527 * 1 2 3 28 28 H 1.09004 * 109.46643 * 154.31356 * 1 2 3 29 29 H 1.09008 * 117.50135 * 145.03733 * 4 2 1 30 30 H 1.09003 * 117.53625 * 359.97438 * 4 2 1 31 31 H 1.08999 * 109.47133 * 64.91037 * 7 5 2 32 32 H 1.09002 * 109.47227 * 304.91309 * 7 5 2 33 33 H 1.08997 * 109.58946 * 246.19938 * 11 10 8 34 34 H 1.08996 * 109.58700 * 6.63152 * 11 10 8 35 35 H 1.08997 * 109.63710 * 294.87080 * 12 11 10 36 36 H 1.08993 * 109.46194 * 174.73999 * 12 11 10 37 37 H 1.08995 * 109.45671 * 58.53020 * 13 12 11 38 38 H 1.09004 * 109.46795 * 93.84455 * 15 14 13 39 39 H 1.08996 * 109.47272 * 213.84465 * 15 14 13 40 40 H 1.08992 * 109.46695 * 333.84543 * 15 14 13 41 41 H 0.96996 * 120.00399 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.49574 * 301.41617 * 24 13 12 43 43 H 1.08997 * 109.52434 * 181.33399 * 24 13 12 44 44 H 1.09004 * 109.58491 * 353.37337 * 25 10 8 45 45 H 1.08998 * 109.58361 * 113.79587 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1214 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 3.1714 -0.8748 1.2687 7 6 1.3590 -2.1564 1.4711 8 6 2.2304 -3.0983 2.2614 9 8 3.4347 -2.9556 2.2597 10 7 1.6717 -4.1028 2.9652 11 6 0.2139 -4.2850 2.9815 12 6 -0.1025 -5.7302 2.5675 13 6 0.6613 -6.6944 3.4781 14 7 0.3351 -8.0745 3.1106 15 6 0.6248 -8.5609 1.7594 16 6 -0.2409 -8.9100 4.0302 17 1 -0.7870 -8.4985 4.8661 18 6 -0.1227 -10.2857 3.8879 19 7 0.7237 -10.7866 3.0132 20 14 -1.1651 -11.4262 4.9377 21 1 -2.0295 -10.6198 5.8363 22 1 -2.0144 -12.2697 4.0588 23 1 -0.2795 -12.2959 5.7529 24 6 2.1661 -6.4662 3.3177 25 6 2.5086 -5.0328 3.7356 26 1 -0.3633 0.0772 1.0248 27 1 -0.3634 0.8487 -0.5793 28 1 -0.3633 -0.9262 -0.4455 29 1 3.1725 -0.8756 -1.2679 30 1 1.6128 -1.8598 -1.2681 31 1 0.7940 -2.7204 0.7290 32 1 0.6684 -1.6488 2.1446 33 1 -0.1665 -4.0981 3.9857 34 1 -0.2488 -3.5924 2.2784 35 1 0.2009 -5.8896 1.5328 36 1 -1.1732 -5.9095 2.6643 37 1 0.3758 -6.5177 4.5150 38 1 1.6013 -9.0452 1.7492 39 1 -0.1394 -9.2778 1.4596 40 1 0.6283 -7.7215 1.0642 41 1 0.8061 -11.7479 2.9135 42 1 2.4482 -6.6186 2.2758 43 1 2.7104 -7.1690 3.9485 44 1 3.5604 -4.8337 3.5303 45 1 2.3115 -4.9055 4.8000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985631235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:27 Heat of formation + Delta-G solvation = -14.278784 kcal Electronic energy + Delta-G solvation = -22657.439924 eV Core-core repulsion = 19482.298112 eV Total energy + Delta-G solvation = -3175.141811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28404 -39.29390 -38.36464 -36.66226 -33.97030 -32.49273 -31.47125 -30.40005 -28.91183 -28.03603 -26.29043 -24.16365 -23.85272 -22.49583 -21.44680 -20.30591 -19.58108 -18.75306 -18.22297 -17.21841 -16.89617 -16.47504 -16.05409 -15.71024 -15.20404 -15.06720 -14.77859 -14.60453 -14.48446 -14.03305 -13.94825 -13.67974 -13.37661 -13.16019 -13.08922 -12.85345 -12.79711 -12.64577 -12.39797 -12.33821 -12.19277 -12.04298 -12.00368 -11.81581 -11.58224 -11.22682 -10.87503 -10.77427 -10.63431 -10.55537 -9.63203 -8.75585 -7.80610 -5.29182 1.47025 1.48265 1.58485 1.65955 2.04253 2.51830 2.88261 3.33108 3.53116 3.65345 3.74844 3.90426 3.99290 4.04001 4.15958 4.20342 4.31141 4.40401 4.49066 4.52408 4.58182 4.64359 4.74119 4.76275 4.83333 4.85660 4.92700 4.97249 5.01164 5.03505 5.06384 5.12776 5.25623 5.27918 5.35254 5.39139 5.51688 5.51935 5.62071 5.68395 5.72541 6.35175 6.48648 7.17113 7.20793 7.90107 8.34823 9.22878 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033520 B = 0.003467 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.120725 B = 8074.543144 C = 8266.426189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.137 4.137 3 H 0.108 0.892 4 C -0.183 4.183 5 C -0.153 4.153 6 H 0.091 0.909 7 C -0.098 4.098 8 C 0.510 3.490 9 O -0.591 6.591 10 N -0.609 5.609 11 C 0.115 3.885 12 C -0.137 4.137 13 C 0.172 3.828 14 N -0.612 5.612 15 C 0.185 3.815 16 C -0.258 4.258 17 H 0.076 0.924 18 C -0.057 4.057 19 N -0.942 5.942 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.293 1.293 23 H -0.296 1.296 24 C -0.131 4.131 25 C 0.123 3.877 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.064 0.936 38 H -0.006 1.006 39 H 0.015 0.985 40 H 0.025 0.975 41 H 0.246 0.754 42 H 0.039 0.961 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 21.493 -3.868 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.155 4.155 3 H 0.126 0.874 4 C -0.220 4.220 5 C -0.172 4.172 6 H 0.109 0.891 7 C -0.137 4.137 8 C 0.300 3.700 9 O -0.472 6.472 10 N -0.342 5.342 11 C -0.007 4.007 12 C -0.176 4.176 13 C 0.066 3.934 14 N -0.334 5.334 15 C 0.039 3.961 16 C -0.388 4.388 17 H 0.094 0.906 18 C -0.252 4.252 19 N -0.590 5.590 20 Si 0.797 3.203 21 H -0.186 1.186 22 H -0.220 1.220 23 H -0.224 1.224 24 C -0.172 4.172 25 C -0.001 4.001 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.012 0.988 39 H 0.034 0.966 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.040 21.393 -3.896 21.956 hybrid contribution 0.240 -1.593 0.366 1.652 sum -2.800 19.800 -3.530 20.306 Atomic orbital electron populations 1.21418 0.91362 1.02689 1.02727 1.22515 0.96408 0.93971 1.02650 0.87390 1.23260 1.02813 1.02337 0.93591 1.22061 1.00857 0.99967 0.94295 0.89092 1.21239 0.97537 0.95150 0.99780 1.21294 0.88680 0.81357 0.78630 1.90638 1.17335 1.73996 1.65202 1.48289 1.08559 1.28951 1.48376 1.22048 0.78202 0.96491 1.03998 1.22377 1.01085 0.94483 0.99696 1.20548 0.91678 0.83752 0.97461 1.44216 1.71394 1.08752 1.09041 1.20378 0.97343 0.93885 0.84455 1.19660 1.25301 0.87937 1.05945 0.90648 1.25820 0.99825 0.98899 1.00631 1.70257 1.38137 1.10893 1.39675 0.85176 0.78113 0.78872 0.78133 1.18634 1.22047 1.22358 1.22283 0.99198 0.95482 1.00211 1.21449 0.95476 0.87503 0.95643 0.91136 0.91296 0.92037 0.89249 0.88236 0.87203 0.85890 0.89295 0.86569 0.92930 0.90301 0.91821 0.98810 0.96626 0.95646 0.94516 0.94211 0.93205 0.90965 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.20 71.98 0.66 -0.63 16 2 C -0.14 -1.97 6.41 -10.77 -0.07 -2.04 16 3 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.18 -3.19 9.82 30.62 0.30 -2.89 16 5 C -0.15 -2.99 5.41 -10.80 -0.06 -3.05 16 6 H 0.09 2.26 7.31 -2.38 -0.02 2.24 16 7 C -0.10 -1.74 3.41 29.85 0.10 -1.64 16 8 C 0.51 13.79 7.70 87.66 0.67 14.47 16 9 O -0.59 -21.08 14.98 -3.02 -0.05 -21.12 16 10 N -0.61 -15.88 2.97 -818.07 -2.43 -18.31 16 11 C 0.11 2.34 6.37 86.51 0.55 2.89 16 12 C -0.14 -3.92 5.34 30.82 0.16 -3.76 16 13 C 0.17 6.50 2.55 45.02 0.11 6.61 16 14 N -0.61 -29.85 2.81 -702.63 -1.97 -31.82 16 15 C 0.18 9.22 8.03 127.77 1.03 10.25 16 16 C -0.26 -13.86 9.59 84.03 0.81 -13.05 16 17 H 0.08 3.86 7.82 -2.91 -0.02 3.84 16 18 C -0.06 -3.19 5.12 84.86 0.43 -2.76 16 19 N -0.94 -56.32 10.64 21.65 0.23 -56.09 16 20 Si 0.97 44.75 29.57 68.60 2.03 46.78 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 24 C -0.13 -4.84 5.34 30.67 0.16 -4.68 16 25 C 0.12 3.72 6.43 86.36 0.56 4.27 16 26 H 0.07 0.62 7.84 -2.39 -0.02 0.60 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.61 7.90 -2.39 -0.02 0.59 16 29 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.10 1.61 7.94 -2.39 -0.02 1.59 16 31 H 0.11 1.64 7.43 -2.39 -0.02 1.63 16 32 H 0.12 1.52 7.56 -2.39 -0.02 1.50 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.12 1.56 5.93 -2.39 -0.01 1.54 16 35 H 0.05 1.62 6.72 -2.39 -0.02 1.61 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 2.38 7.86 -2.39 -0.02 2.36 16 38 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 39 H 0.01 0.82 7.22 -2.39 -0.02 0.81 16 40 H 0.03 1.09 6.46 -2.39 -0.02 1.08 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 43 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.07 2.39 7.01 -2.38 -0.02 2.38 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -69.42 348.44 4.19 -65.23 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.95 Total: 11.33 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 5.43 Total: 4.00 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -4.17 Total: -106.22 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.05 Total: -21.12 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -69.42 4.19 -65.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985631235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.955 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds