Wall clock time and date at job start Tue Mar 31 2020 02:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.00116 * 2 1 4 4 C 1.54318 * 109.77053 * 121.15340 * 2 1 3 5 5 H 1.09000 * 110.92804 * 23.47174 * 4 2 1 6 6 N 1.46493 * 110.59210 * 260.14225 * 4 2 1 7 7 C 1.36934 * 120.00485 * 160.19875 * 6 4 2 8 8 H 1.08002 * 119.99278 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00495 * 180.02562 * 7 6 4 10 10 N 1.31616 * 119.99901 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00005 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47175 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47396 * 119.99406 * 11 9 7 14 14 H 1.48499 * 109.46809 * 239.99378 * 11 9 7 15 15 C 1.55166 * 102.86083 * 141.88627 * 4 2 1 16 16 C 1.54915 * 101.57739 * 324.30268 * 15 4 2 17 17 N 1.47025 * 109.88264 * 238.90150 * 2 1 3 18 18 C 1.34774 * 125.64616 * 61.67954 * 17 2 1 19 19 O 1.21285 * 120.00019 * 359.71652 * 18 17 2 20 20 C 1.50699 * 119.99942 * 179.71722 * 18 17 2 21 21 C 1.52997 * 109.47078 * 59.99862 * 20 18 17 22 22 C 1.52999 * 109.47317 * 179.97438 * 21 20 18 23 23 C 1.53005 * 109.47159 * 300.00546 * 22 21 20 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 22 21 25 25 C 1.53000 * 109.47083 * 179.97438 * 20 18 17 26 26 H 1.09002 * 109.46986 * 179.64637 * 1 2 3 27 27 H 1.08996 * 109.47033 * 299.64365 * 1 2 3 28 28 H 1.09001 * 109.46994 * 59.64265 * 1 2 3 29 29 H 0.97009 * 119.99785 * 340.19774 * 6 4 2 30 30 H 0.96997 * 120.00271 * 180.02562 * 10 9 7 31 31 H 1.08994 * 111.00205 * 206.23222 * 15 4 2 32 32 H 1.08994 * 111.00536 * 82.37606 * 15 4 2 33 33 H 1.09000 * 110.36447 * 278.16879 * 16 15 4 34 34 H 1.09000 * 110.36341 * 155.85222 * 16 15 4 35 35 H 1.09002 * 109.46959 * 299.99950 * 20 18 17 36 36 H 1.08996 * 109.47853 * 300.00179 * 21 20 18 37 37 H 1.09002 * 109.47153 * 60.00207 * 21 20 18 38 38 H 1.09000 * 109.47486 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.46716 * 60.00091 * 22 21 20 40 40 H 1.09002 * 109.46935 * 299.99411 * 23 22 21 41 41 H 1.09001 * 109.46812 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47194 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.46695 * 59.99734 * 24 23 22 44 44 H 1.08992 * 109.47399 * 299.99938 * 25 20 18 45 45 H 1.09004 * 109.46724 * 60.00424 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0520 -0.7513 1.2428 5 1 1.3049 -1.4513 1.6169 6 7 2.4473 0.1952 2.2887 7 6 2.5496 -0.2238 3.5883 8 1 2.3385 -1.2522 3.8422 9 6 2.9236 0.6731 4.5795 10 7 3.1803 1.9264 4.2701 11 14 3.0639 0.1012 6.3523 12 1 2.7256 -1.3424 6.4349 13 1 4.4531 0.3126 6.8322 14 1 2.1239 0.8787 7.1990 15 6 3.2889 -1.5102 0.6934 16 6 2.8191 -1.8763 -0.7367 17 7 2.0301 -0.7141 -1.1839 18 6 1.8086 -0.3613 -2.4657 19 8 1.1413 0.6195 -2.7180 20 6 2.3901 -1.1856 -3.5853 21 6 1.8536 -2.6157 -3.4975 22 6 2.4435 -3.4524 -4.6346 23 6 2.0447 -2.8396 -5.9786 24 6 2.5812 -1.4094 -6.0664 25 6 1.9913 -0.5734 -4.9295 26 1 -0.3633 -1.0277 -0.0063 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5194 -0.8868 29 1 2.6365 1.1189 2.0606 30 1 3.4420 2.5531 4.9626 31 1 3.4896 -2.4065 1.2801 32 1 4.1639 -0.8610 0.6629 33 1 2.1971 -2.7712 -0.7141 34 1 3.6776 -2.0265 -1.3912 35 1 3.4767 -1.1992 -3.4999 36 1 2.1373 -3.0522 -2.5399 37 1 0.7670 -2.6020 -3.5829 38 1 2.0609 -4.4712 -4.5724 39 1 3.5301 -3.4661 -4.5496 40 1 0.9581 -2.8259 -6.0636 41 1 2.4654 -3.4354 -6.7887 42 1 2.2975 -0.9731 -7.0240 43 1 3.6678 -1.4232 -5.9814 44 1 0.9048 -0.5600 -5.0147 45 1 2.3733 0.4456 -4.9923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985887023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:25 Heat of formation + Delta-G solvation = -47.105687 kcal Electronic energy + Delta-G solvation = -22945.735979 eV Core-core repulsion = 19769.170687 eV Total energy + Delta-G solvation = -3176.565292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39318 -38.29417 -36.99124 -34.15404 -32.13193 -31.06502 -30.87078 -30.56568 -28.90959 -25.23699 -24.11245 -23.20824 -22.57897 -21.93936 -20.23609 -19.91290 -18.70999 -17.23997 -16.76693 -16.04518 -15.40072 -15.07077 -14.74883 -14.30663 -14.26526 -13.65286 -13.60518 -13.40562 -13.20252 -12.88674 -12.67387 -12.42832 -12.32570 -12.03529 -11.81604 -11.60411 -11.40663 -11.28847 -11.14812 -11.05211 -10.86308 -10.77941 -10.65071 -10.49635 -10.24758 -10.21440 -9.99687 -9.76354 -9.35963 -8.95645 -8.35331 -7.03785 -5.82541 -3.12955 2.85037 3.19940 3.39997 3.45726 3.48027 4.42264 4.50233 4.54053 4.55709 4.91071 5.00295 5.03544 5.04236 5.22143 5.26434 5.28895 5.31751 5.37530 5.42908 5.50766 5.58537 5.63505 5.67716 5.80340 5.83366 5.87992 5.90754 5.95692 5.98436 6.04993 6.10533 6.12799 6.17132 6.27878 6.31030 6.46730 6.58867 6.62458 6.76880 6.92972 7.65175 7.82621 8.34556 8.41904 9.46317 10.01125 10.35801 11.39747 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.003615 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.656677 B = 7742.776315 C = 8062.967988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.076 0.924 4 C 0.177 3.823 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.243 4.243 8 H 0.073 0.927 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.099 3.901 17 N -0.608 5.608 18 C 0.529 3.471 19 O -0.545 6.545 20 C -0.101 4.101 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.098 4.098 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.386 0.614 30 H 0.256 0.744 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 -11.255 -18.594 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.094 0.906 4 C 0.065 3.935 5 H 0.082 0.918 6 N -0.356 5.356 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.198 4.198 16 C -0.024 4.024 17 N -0.342 5.342 18 C 0.317 3.683 19 O -0.422 6.422 20 C -0.122 4.122 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.136 4.136 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.220 0.780 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.269 -10.773 -18.611 21.541 hybrid contribution 0.319 0.016 1.017 1.066 sum -0.951 -10.757 -17.593 20.643 Atomic orbital electron populations 1.22035 0.94984 1.01498 1.02631 1.21884 0.94386 0.96861 0.84586 0.90589 1.21244 0.93477 0.91618 0.87173 0.91793 1.42361 1.81155 1.08953 1.03115 1.19246 1.39251 0.95051 0.83822 0.90952 1.24768 1.02150 0.95620 0.98165 1.69673 1.52729 1.02898 1.32434 0.86112 0.77278 0.77696 0.85033 1.20491 1.21835 1.21824 1.23591 1.01442 1.01723 0.93084 1.22449 0.94465 0.88464 0.97063 1.48585 1.51923 1.28613 1.05050 1.20296 0.80527 0.85078 0.82354 1.90668 1.40245 1.28021 1.83311 1.21281 1.01470 0.95543 0.93932 1.21675 1.00997 0.93232 0.99654 1.21523 1.00851 0.98674 0.94374 1.21567 1.01062 0.96102 0.97158 1.21551 1.00442 0.95300 0.98398 1.21323 1.01631 0.98893 0.91775 0.93179 0.91245 0.92048 0.77990 0.93421 0.90623 0.90657 0.91609 0.91335 0.88896 0.90631 0.91556 0.91759 0.91804 0.91967 0.92136 0.91817 0.91994 0.91282 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.10 37.16 0.34 -2.28 16 2 C 0.13 2.27 3.20 -66.95 -0.21 2.05 16 3 H 0.08 1.55 7.68 -51.93 -0.40 1.15 16 4 C 0.18 3.38 3.11 -66.10 -0.21 3.17 16 5 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16 6 N -0.72 -17.37 5.25 -51.65 -0.27 -17.65 16 7 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 11 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 15 C -0.16 -2.54 6.77 -24.57 -0.17 -2.71 16 16 C 0.10 1.28 5.14 -2.53 -0.01 1.26 16 17 N -0.61 -9.38 3.06 -163.02 -0.50 -9.87 16 18 C 0.53 8.20 7.01 -10.99 -0.08 8.13 16 19 O -0.54 -10.36 15.01 5.55 0.08 -10.28 16 20 C -0.10 -1.15 1.88 -91.77 -0.17 -1.32 16 21 C -0.12 -1.12 5.01 -26.73 -0.13 -1.25 16 22 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 23 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 24 C -0.12 -0.99 5.92 -26.76 -0.16 -1.15 16 25 C -0.10 -1.07 4.49 -26.76 -0.12 -1.19 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.09 6.88 -51.93 -0.36 0.73 16 29 H 0.39 10.15 7.50 -40.82 -0.31 9.85 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 0.74 7.08 -51.93 -0.37 0.38 16 34 H 0.07 0.75 7.36 -51.93 -0.38 0.36 16 35 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 36 H 0.08 0.69 5.00 -51.93 -0.26 0.43 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 45 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -30.52 345.28 -9.19 -39.71 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.92 Total: 7.39 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -1.49 Total: -4.44 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.05 Total: -54.46 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.52 -9.19 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985887023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.399 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds