Wall clock time and date at job start Tue Mar 31 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.00116 * 2 1 4 4 C 1.54318 * 109.77053 * 121.15340 * 2 1 3 5 5 H 1.09000 * 110.92804 * 23.47174 * 4 2 1 6 6 N 1.46493 * 110.59210 * 260.14225 * 4 2 1 7 7 C 1.36934 * 120.00485 * 160.19875 * 6 4 2 8 8 H 1.08002 * 119.99278 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00495 * 180.02562 * 7 6 4 10 10 N 1.31616 * 119.99901 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00005 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47175 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47396 * 119.99406 * 11 9 7 14 14 H 1.48499 * 109.46809 * 239.99378 * 11 9 7 15 15 C 1.55166 * 102.86083 * 141.88627 * 4 2 1 16 16 C 1.54915 * 101.57739 * 324.30268 * 15 4 2 17 17 N 1.47025 * 109.88264 * 238.90150 * 2 1 3 18 18 C 1.34774 * 125.64616 * 61.67954 * 17 2 1 19 19 O 1.21285 * 120.00019 * 359.71652 * 18 17 2 20 20 C 1.50699 * 119.99942 * 179.71722 * 18 17 2 21 21 C 1.52997 * 109.47078 * 59.99862 * 20 18 17 22 22 C 1.52999 * 109.47317 * 179.97438 * 21 20 18 23 23 C 1.53005 * 109.47159 * 300.00546 * 22 21 20 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 22 21 25 25 C 1.53000 * 109.47083 * 179.97438 * 20 18 17 26 26 H 1.09002 * 109.46986 * 179.64637 * 1 2 3 27 27 H 1.08996 * 109.47033 * 299.64365 * 1 2 3 28 28 H 1.09001 * 109.46994 * 59.64265 * 1 2 3 29 29 H 0.97009 * 119.99785 * 340.19774 * 6 4 2 30 30 H 0.96997 * 120.00271 * 180.02562 * 10 9 7 31 31 H 1.08994 * 111.00205 * 206.23222 * 15 4 2 32 32 H 1.08994 * 111.00536 * 82.37606 * 15 4 2 33 33 H 1.09000 * 110.36447 * 278.16879 * 16 15 4 34 34 H 1.09000 * 110.36341 * 155.85222 * 16 15 4 35 35 H 1.09002 * 109.46959 * 299.99950 * 20 18 17 36 36 H 1.08996 * 109.47853 * 300.00179 * 21 20 18 37 37 H 1.09002 * 109.47153 * 60.00207 * 21 20 18 38 38 H 1.09000 * 109.47486 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.46716 * 60.00091 * 22 21 20 40 40 H 1.09002 * 109.46935 * 299.99411 * 23 22 21 41 41 H 1.09001 * 109.46812 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47194 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.46695 * 59.99734 * 24 23 22 44 44 H 1.08992 * 109.47399 * 299.99938 * 25 20 18 45 45 H 1.09004 * 109.46724 * 60.00424 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0520 -0.7513 1.2428 5 1 1.3049 -1.4513 1.6169 6 7 2.4473 0.1952 2.2887 7 6 2.5496 -0.2238 3.5883 8 1 2.3385 -1.2522 3.8422 9 6 2.9236 0.6731 4.5795 10 7 3.1803 1.9264 4.2701 11 14 3.0639 0.1012 6.3523 12 1 2.7256 -1.3424 6.4349 13 1 4.4531 0.3126 6.8322 14 1 2.1239 0.8787 7.1990 15 6 3.2889 -1.5102 0.6934 16 6 2.8191 -1.8763 -0.7367 17 7 2.0301 -0.7141 -1.1839 18 6 1.8086 -0.3613 -2.4657 19 8 1.1413 0.6195 -2.7180 20 6 2.3901 -1.1856 -3.5853 21 6 1.8536 -2.6157 -3.4975 22 6 2.4435 -3.4524 -4.6346 23 6 2.0447 -2.8396 -5.9786 24 6 2.5812 -1.4094 -6.0664 25 6 1.9913 -0.5734 -4.9295 26 1 -0.3633 -1.0277 -0.0063 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5194 -0.8868 29 1 2.6365 1.1189 2.0606 30 1 3.4420 2.5531 4.9626 31 1 3.4896 -2.4065 1.2801 32 1 4.1639 -0.8610 0.6629 33 1 2.1971 -2.7712 -0.7141 34 1 3.6776 -2.0265 -1.3912 35 1 3.4767 -1.1992 -3.4999 36 1 2.1373 -3.0522 -2.5399 37 1 0.7670 -2.6020 -3.5829 38 1 2.0609 -4.4712 -4.5724 39 1 3.5301 -3.4661 -4.5496 40 1 0.9581 -2.8259 -6.0636 41 1 2.4654 -3.4354 -6.7887 42 1 2.2975 -0.9731 -7.0240 43 1 3.6678 -1.4232 -5.9814 44 1 0.9048 -0.5600 -5.0147 45 1 2.3733 0.4456 -4.9923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985887023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:24 Heat of formation + Delta-G solvation = -65.211593 kcal Electronic energy + Delta-G solvation = -22946.521110 eV Core-core repulsion = 19769.170687 eV Total energy + Delta-G solvation = -3177.350423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58400 -39.39741 -38.15843 -35.93657 -33.59981 -32.51090 -31.76012 -31.59558 -30.42411 -26.88651 -25.23124 -24.79270 -23.39688 -23.05215 -21.59395 -20.78520 -19.96690 -19.11492 -18.01865 -17.29925 -16.62761 -16.32473 -16.15436 -15.48095 -15.31119 -15.01261 -14.85396 -14.69340 -14.43901 -14.26877 -13.83089 -13.49916 -13.30861 -13.15832 -13.11248 -13.00299 -12.93299 -12.61479 -12.54288 -12.19681 -12.14682 -12.06479 -11.99282 -11.72853 -11.54842 -11.46759 -11.29129 -10.95441 -10.92965 -10.56312 -9.65081 -9.02903 -7.94207 -5.24372 1.49381 1.50100 1.60036 1.63915 1.96513 2.57527 3.35713 3.45337 3.69312 3.76795 3.79698 3.83734 4.00021 4.16579 4.25991 4.30844 4.33616 4.35513 4.40441 4.46162 4.50956 4.58287 4.62531 4.65890 4.70848 4.77749 4.92515 5.00254 5.03624 5.16735 5.17520 5.21410 5.23417 5.28143 5.29085 5.34800 5.39317 5.43944 5.47567 5.55357 5.59313 6.26146 6.60606 7.17766 7.32380 8.04371 8.28257 9.29660 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.003615 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.656677 B = 7742.776315 C = 8062.967988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.131 3.869 3 H 0.041 0.959 4 C 0.171 3.829 5 H 0.070 0.930 6 N -0.730 5.730 7 C -0.235 4.235 8 H 0.084 0.916 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.260 1.260 13 H -0.296 1.296 14 H -0.298 1.298 15 C -0.149 4.149 16 C 0.106 3.894 17 N -0.608 5.608 18 C 0.522 3.478 19 O -0.589 6.589 20 C -0.093 4.093 21 C -0.114 4.114 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.097 4.097 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.370 0.630 30 H 0.250 0.750 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 -14.729 -19.713 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.059 0.941 4 C 0.061 3.939 5 H 0.088 0.912 6 N -0.370 5.370 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.184 1.184 13 H -0.223 1.223 14 H -0.226 1.226 15 C -0.190 4.190 16 C -0.016 4.016 17 N -0.341 5.341 18 C 0.312 3.688 19 O -0.469 6.469 20 C -0.114 4.114 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.136 4.136 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.202 0.798 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.630 -14.329 -19.764 24.420 hybrid contribution 0.073 1.110 1.282 1.697 sum -0.557 -13.220 -18.482 22.730 Atomic orbital electron populations 1.21919 0.94427 1.02337 1.01412 1.21594 0.94764 0.95332 0.85648 0.94126 1.21439 0.95038 0.91059 0.86344 0.91177 1.42546 1.81547 1.09142 1.03738 1.19664 1.36882 0.95303 0.84779 0.89771 1.25590 1.03257 0.95826 1.02237 1.69843 1.55020 1.04182 1.33262 0.85065 0.76522 0.78035 0.80074 1.18446 1.22300 1.22554 1.23409 0.98884 1.01287 0.95396 1.22624 0.95703 0.88104 0.95183 1.48650 1.51997 1.29057 1.04398 1.21186 0.79795 0.84829 0.82951 1.90649 1.42265 1.30082 1.83919 1.21334 1.02100 0.96012 0.91910 1.21680 1.00410 0.91897 1.01150 1.21522 1.01481 0.98800 0.93178 1.21582 1.00812 0.95551 0.97941 1.21526 1.00861 0.95451 0.97296 1.21306 1.00678 0.98642 0.92932 0.91193 0.92510 0.93178 0.79813 0.94142 0.89113 0.92708 0.88612 0.88217 0.87145 0.89690 0.92661 0.90384 0.90615 0.92564 0.90473 0.91264 0.90956 0.92990 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.10 71.98 0.66 -4.28 16 2 C 0.13 4.77 3.20 45.34 0.15 4.91 16 3 H 0.04 1.76 7.68 -2.39 -0.02 1.74 16 4 C 0.17 6.43 3.11 46.18 0.14 6.57 16 5 H 0.07 2.57 7.84 -2.39 -0.02 2.55 16 6 N -0.73 -36.07 5.25 -317.34 -1.67 -37.73 16 7 C -0.23 -12.53 9.98 84.03 0.84 -11.69 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 9 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 10 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 11 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 12 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 13 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 15 C -0.15 -4.52 6.77 31.99 0.22 -4.30 16 16 C 0.11 2.37 5.14 86.86 0.45 2.81 16 17 N -0.61 -18.02 3.06 -788.07 -2.41 -20.43 16 18 C 0.52 15.86 7.01 87.66 0.61 16.47 16 19 O -0.59 -23.02 15.01 -3.05 -0.05 -23.07 16 20 C -0.09 -1.91 1.88 -11.54 -0.02 -1.93 16 21 C -0.11 -1.78 5.01 30.59 0.15 -1.63 16 22 C -0.11 -1.25 5.92 30.60 0.18 -1.07 16 23 C -0.12 -1.43 5.92 30.60 0.18 -1.25 16 24 C -0.11 -1.61 5.92 30.58 0.18 -1.43 16 25 C -0.10 -2.04 4.49 30.58 0.14 -1.90 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.83 6.88 -2.39 -0.02 1.81 16 29 H 0.37 20.35 7.50 -92.70 -0.70 19.65 16 30 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 1.68 7.08 -2.39 -0.02 1.66 16 34 H 0.10 1.70 7.36 -2.39 -0.02 1.68 16 35 H 0.11 1.94 7.85 -2.39 -0.02 1.92 16 36 H 0.08 1.17 5.00 -2.39 -0.01 1.15 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 45 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -68.57 345.28 2.79 -65.78 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.26 Total: 30.03 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.34 Total: -2.60 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -3.79 Total: -117.45 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.57 2.79 -65.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985887023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.571 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds