Wall clock time and date at job start Tue Mar 31 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.87322 * 2 1 4 4 C 1.54325 * 109.88099 * 238.98142 * 2 1 3 5 5 H 1.09003 * 110.71564 * 99.69542 * 4 2 1 6 6 N 1.46496 * 110.72039 * 336.60042 * 4 2 1 7 7 C 1.36945 * 119.99718 * 154.99971 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.55156 * 102.94185 * 218.23480 * 4 2 1 16 16 C 1.54912 * 101.58113 * 35.50247 * 15 4 2 17 17 N 1.47021 * 110.00737 * 121.09789 * 2 1 3 18 18 C 1.34774 * 125.64877 * 298.46205 * 17 2 1 19 19 O 1.21280 * 120.00114 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99967 * 180.02562 * 18 17 2 21 21 C 1.53002 * 109.47333 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47190 * 180.02562 * 21 20 18 23 23 C 1.53782 * 113.61496 * 274.13963 * 22 21 20 24 24 C 1.53958 * 87.02025 * 220.04864 * 23 22 21 25 25 C 1.53784 * 87.11223 * 25.35980 * 24 23 22 26 26 H 1.09000 * 109.46905 * 181.01400 * 1 2 3 27 27 H 1.08994 * 109.47302 * 301.01500 * 1 2 3 28 28 H 1.09002 * 109.47133 * 61.01656 * 1 2 3 29 29 H 0.96996 * 120.00499 * 334.99701 * 6 4 2 30 30 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 31 31 H 1.08990 * 111.00608 * 153.57852 * 15 4 2 32 32 H 1.09002 * 111.00242 * 277.43296 * 15 4 2 33 33 H 1.08996 * 110.36871 * 204.14837 * 16 15 4 34 34 H 1.09005 * 110.36301 * 81.82618 * 16 15 4 35 35 H 1.08996 * 109.47286 * 300.00690 * 20 18 17 36 36 H 1.09004 * 109.46796 * 59.99975 * 20 18 17 37 37 H 1.08997 * 109.46825 * 300.00492 * 21 20 18 38 38 H 1.09006 * 109.46614 * 60.00144 * 21 20 18 39 39 H 1.08996 * 112.84879 * 45.33430 * 22 21 20 40 40 H 1.09003 * 113.61391 * 334.56487 * 23 22 21 41 41 H 1.08994 * 113.61851 * 105.47005 * 23 22 21 42 42 H 1.09005 * 113.53598 * 270.81528 * 24 23 22 43 43 H 1.08994 * 113.66721 * 139.93141 * 24 23 22 44 44 H 1.08991 * 113.61704 * 220.09270 * 25 24 23 45 45 H 1.09000 * 113.68699 * 89.19598 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 2.3475 -0.0433 -2.0223 6 7 1.0486 -1.6858 -1.7475 7 6 1.0612 -2.0613 -3.0644 8 1 1.8127 -1.6658 -3.7315 9 6 0.1081 -2.9504 -3.5417 10 7 -0.8082 -3.4321 -2.7287 11 14 0.1248 -3.4622 -5.3381 12 1 -0.9877 -4.4123 -5.5926 13 1 -0.0426 -2.2620 -6.1963 14 1 1.4184 -4.1197 -5.6534 15 6 3.2900 -1.5101 -0.6954 16 6 2.8196 -1.8769 0.7343 17 7 2.0331 -0.7135 1.1829 18 6 1.8114 -0.3626 2.4652 19 8 1.1451 0.6186 2.7188 20 6 2.3914 -1.1893 3.5838 21 6 1.9927 -0.5788 4.9289 22 6 2.5821 -1.4177 6.0645 23 6 1.7014 -2.6115 6.4696 24 6 2.0706 -2.2857 7.9283 25 6 2.3095 -0.8395 7.4631 26 1 -0.3633 -1.0275 0.0182 27 1 -0.3633 0.5295 0.8807 28 1 -0.3633 0.4980 -0.8990 29 1 0.3734 -2.0408 -1.1484 30 1 -1.4745 -4.0531 -3.0623 31 1 3.4888 -2.4061 -1.2832 32 1 4.1664 -0.8628 -0.6642 33 1 3.6778 -2.0298 1.3885 34 1 2.1955 -2.7704 0.7107 35 1 2.0082 -2.2076 3.5194 36 1 3.4781 -1.2040 3.4989 37 1 2.3756 0.4396 4.9934 38 1 0.9060 -0.5644 5.0134 39 1 3.6262 -1.6823 5.8973 40 1 0.6441 -2.4702 6.2450 41 1 2.0834 -3.5726 6.1258 42 1 2.9748 -2.7889 8.2713 43 1 1.2379 -2.3887 8.6240 44 1 3.1818 -0.3723 7.9200 45 1 1.4196 -0.2118 7.5102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986118310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:53 Heat of formation + Delta-G solvation = -14.371681 kcal Electronic energy + Delta-G solvation = -22430.418129 eV Core-core repulsion = 19255.272290 eV Total energy + Delta-G solvation = -3175.145839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.99970 -38.99619 -37.40676 -33.96202 -32.83262 -31.43263 -30.72910 -28.90701 -26.37972 -25.71154 -25.18462 -23.57079 -22.75634 -21.55906 -19.63171 -19.51130 -18.35197 -17.50690 -16.60046 -16.10963 -15.83066 -15.17194 -14.80823 -14.31965 -14.29584 -13.78170 -13.43754 -13.21929 -12.96824 -12.65636 -12.60947 -12.54609 -12.21928 -12.09945 -11.63343 -11.45494 -11.26855 -11.06812 -10.98195 -10.92064 -10.75101 -10.70923 -10.61422 -10.34993 -10.24398 -10.22920 -10.05923 -9.62307 -9.36177 -8.96336 -8.24920 -7.03737 -5.82585 -3.12194 2.95070 3.33113 3.40496 3.45502 3.46259 4.41089 4.48290 4.53122 4.54043 4.68328 4.80035 5.08072 5.10349 5.23587 5.29074 5.41038 5.47323 5.53805 5.55815 5.59857 5.60612 5.66317 5.68381 5.73206 5.76632 5.78936 5.88581 5.97330 6.02780 6.14099 6.16166 6.22454 6.37111 6.40222 6.43887 6.53719 6.64016 6.76065 6.90769 7.04498 7.64859 7.93046 8.35734 8.50610 9.47273 10.02767 10.37884 11.39565 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.003353 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.268392 B = 8349.813599 C = 8627.526140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.125 3.875 3 H 0.068 0.932 4 C 0.171 3.829 5 H 0.069 0.931 6 N -0.713 5.713 7 C -0.244 4.244 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.291 1.291 13 H -0.286 1.286 14 H -0.286 1.286 15 C -0.160 4.160 16 C 0.105 3.895 17 N -0.609 5.609 18 C 0.524 3.476 19 O -0.550 6.550 20 C -0.134 4.134 21 C -0.092 4.092 22 C -0.111 4.111 23 C -0.139 4.139 24 C -0.144 4.144 25 C -0.137 4.137 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.388 0.612 30 H 0.256 0.744 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.909 2.744 16.515 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 H 0.086 0.914 4 C 0.059 3.941 5 H 0.087 0.913 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.213 1.213 15 C -0.201 4.201 16 C -0.017 4.017 17 N -0.343 5.343 18 C 0.313 3.687 19 O -0.428 6.428 20 C -0.174 4.174 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.177 4.177 24 C -0.182 4.182 25 C -0.175 4.175 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.225 0.775 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.523 3.238 16.529 18.877 hybrid contribution -0.150 -0.654 -0.891 1.115 sum 8.373 2.584 15.638 17.926 Atomic orbital electron populations 1.21902 0.94325 1.02819 1.01539 1.21987 0.95391 0.95566 0.84934 0.91400 1.21197 0.89094 0.91613 0.92159 0.91293 1.42548 1.32885 1.51283 1.08847 1.19199 1.10994 1.21190 0.86158 0.91097 1.24745 0.97921 1.00059 0.97898 1.69653 1.18524 1.35386 1.34290 0.86265 0.76952 0.78050 0.84860 1.21740 1.21235 1.21269 1.23513 0.99260 1.02320 0.95025 1.22285 0.94364 0.88895 0.96177 1.48705 1.51896 1.28637 1.05088 1.20328 0.80546 0.85342 0.82506 1.90656 1.40482 1.28325 1.83384 1.21640 1.01897 1.00353 0.93526 1.21316 1.01413 0.98958 0.91330 1.22587 0.99637 0.96492 0.94261 1.23034 1.00277 0.98314 0.96044 1.22841 1.01416 0.97027 0.96871 1.22929 1.01830 0.96460 0.96269 0.91680 0.92825 0.91591 0.77542 0.93370 0.89474 0.92112 0.91790 0.91118 0.89134 0.89427 0.91274 0.91129 0.89362 0.89981 0.91572 0.90437 0.91674 0.91742 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.49 37.16 0.32 -2.56 16 2 C 0.12 2.24 3.42 -66.95 -0.23 2.01 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.17 3.25 3.48 -66.10 -0.23 3.02 16 5 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 6 N -0.71 -16.86 4.55 -51.65 -0.23 -17.09 16 7 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.27 13.06 55.49 0.72 -26.55 16 11 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 C -0.16 -2.56 6.77 -24.58 -0.17 -2.73 16 16 C 0.11 1.56 6.67 -2.53 -0.02 1.54 16 17 N -0.61 -9.95 3.07 -163.01 -0.50 -10.45 16 18 C 0.52 8.44 7.64 -10.98 -0.08 8.35 16 19 O -0.55 -10.60 15.03 5.56 0.08 -10.51 16 20 C -0.13 -1.58 4.70 -27.88 -0.13 -1.71 16 21 C -0.09 -1.03 4.33 -26.73 -0.12 -1.15 16 22 C -0.11 -0.99 3.64 -89.81 -0.33 -1.32 16 23 C -0.14 -1.21 7.65 -25.82 -0.20 -1.41 16 24 C -0.14 -1.12 8.09 -25.82 -0.21 -1.33 16 25 C -0.14 -1.14 7.65 -25.92 -0.20 -1.34 16 26 H 0.06 1.40 6.24 -51.93 -0.32 1.07 16 27 H 0.05 1.05 6.91 -51.93 -0.36 0.69 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.39 9.89 5.69 -40.82 -0.23 9.65 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.75 7.48 -51.93 -0.39 0.37 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 37 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -29.90 354.46 -9.43 -39.33 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.99 Total: 8.76 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.83 Total: -5.56 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.01 Total: -54.09 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.90 -9.43 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986118310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.954 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds