Wall clock time and date at job start Tue Mar 31 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.87322 * 2 1 4 4 C 1.54325 * 109.88099 * 238.98142 * 2 1 3 5 5 H 1.09003 * 110.71564 * 99.69542 * 4 2 1 6 6 N 1.46496 * 110.72039 * 336.60042 * 4 2 1 7 7 C 1.36945 * 119.99718 * 154.99971 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.55156 * 102.94185 * 218.23480 * 4 2 1 16 16 C 1.54912 * 101.58113 * 35.50247 * 15 4 2 17 17 N 1.47021 * 110.00737 * 121.09789 * 2 1 3 18 18 C 1.34774 * 125.64877 * 298.46205 * 17 2 1 19 19 O 1.21280 * 120.00114 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99967 * 180.02562 * 18 17 2 21 21 C 1.53002 * 109.47333 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47190 * 180.02562 * 21 20 18 23 23 C 1.53782 * 113.61496 * 274.13963 * 22 21 20 24 24 C 1.53958 * 87.02025 * 220.04864 * 23 22 21 25 25 C 1.53784 * 87.11223 * 25.35980 * 24 23 22 26 26 H 1.09000 * 109.46905 * 181.01400 * 1 2 3 27 27 H 1.08994 * 109.47302 * 301.01500 * 1 2 3 28 28 H 1.09002 * 109.47133 * 61.01656 * 1 2 3 29 29 H 0.96996 * 120.00499 * 334.99701 * 6 4 2 30 30 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 31 31 H 1.08990 * 111.00608 * 153.57852 * 15 4 2 32 32 H 1.09002 * 111.00242 * 277.43296 * 15 4 2 33 33 H 1.08996 * 110.36871 * 204.14837 * 16 15 4 34 34 H 1.09005 * 110.36301 * 81.82618 * 16 15 4 35 35 H 1.08996 * 109.47286 * 300.00690 * 20 18 17 36 36 H 1.09004 * 109.46796 * 59.99975 * 20 18 17 37 37 H 1.08997 * 109.46825 * 300.00492 * 21 20 18 38 38 H 1.09006 * 109.46614 * 60.00144 * 21 20 18 39 39 H 1.08996 * 112.84879 * 45.33430 * 22 21 20 40 40 H 1.09003 * 113.61391 * 334.56487 * 23 22 21 41 41 H 1.08994 * 113.61851 * 105.47005 * 23 22 21 42 42 H 1.09005 * 113.53598 * 270.81528 * 24 23 22 43 43 H 1.08994 * 113.66721 * 139.93141 * 24 23 22 44 44 H 1.08991 * 113.61704 * 220.09270 * 25 24 23 45 45 H 1.09000 * 113.68699 * 89.19598 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 2.3475 -0.0433 -2.0223 6 7 1.0486 -1.6858 -1.7475 7 6 1.0612 -2.0613 -3.0644 8 1 1.8127 -1.6658 -3.7315 9 6 0.1081 -2.9504 -3.5417 10 7 -0.8082 -3.4321 -2.7287 11 14 0.1248 -3.4622 -5.3381 12 1 -0.9877 -4.4123 -5.5926 13 1 -0.0426 -2.2620 -6.1963 14 1 1.4184 -4.1197 -5.6534 15 6 3.2900 -1.5101 -0.6954 16 6 2.8196 -1.8769 0.7343 17 7 2.0331 -0.7135 1.1829 18 6 1.8114 -0.3626 2.4652 19 8 1.1451 0.6186 2.7188 20 6 2.3914 -1.1893 3.5838 21 6 1.9927 -0.5788 4.9289 22 6 2.5821 -1.4177 6.0645 23 6 1.7014 -2.6115 6.4696 24 6 2.0706 -2.2857 7.9283 25 6 2.3095 -0.8395 7.4631 26 1 -0.3633 -1.0275 0.0182 27 1 -0.3633 0.5295 0.8807 28 1 -0.3633 0.4980 -0.8990 29 1 0.3734 -2.0408 -1.1484 30 1 -1.4745 -4.0531 -3.0623 31 1 3.4888 -2.4061 -1.2832 32 1 4.1664 -0.8628 -0.6642 33 1 3.6778 -2.0298 1.3885 34 1 2.1955 -2.7704 0.7107 35 1 2.0082 -2.2076 3.5194 36 1 3.4781 -1.2040 3.4989 37 1 2.3756 0.4396 4.9934 38 1 0.9060 -0.5644 5.0134 39 1 3.6262 -1.6823 5.8973 40 1 0.6441 -2.4702 6.2450 41 1 2.0834 -3.5726 6.1258 42 1 2.9748 -2.7889 8.2713 43 1 1.2379 -2.3887 8.6240 44 1 3.1818 -0.3723 7.9200 45 1 1.4196 -0.2118 7.5102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986118310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:52 Heat of formation + Delta-G solvation = -30.633211 kcal Electronic energy + Delta-G solvation = -22431.123282 eV Core-core repulsion = 19255.272290 eV Total energy + Delta-G solvation = -3175.850992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29651 -39.79196 -38.77382 -35.72725 -33.95631 -33.06566 -32.15564 -30.57060 -27.32107 -26.73664 -26.38758 -25.44702 -23.88382 -22.60189 -20.97576 -20.30141 -19.64366 -19.39861 -17.93216 -17.46877 -16.73711 -16.36875 -16.10137 -15.73561 -15.68596 -15.14047 -14.85600 -14.60786 -14.12861 -14.05769 -13.88098 -13.49618 -13.28779 -13.27367 -12.97141 -12.85225 -12.79143 -12.54196 -12.39939 -12.26594 -12.18134 -12.10228 -11.88735 -11.64304 -11.44297 -11.38492 -11.09991 -10.95280 -10.90280 -10.64301 -9.60320 -8.99065 -7.91416 -5.19703 1.50282 1.52207 1.58063 1.68973 2.07300 2.58368 3.38688 3.53061 3.70606 3.79318 3.80443 3.88650 3.93009 4.02846 4.05894 4.24825 4.28606 4.31384 4.39483 4.43317 4.59422 4.66011 4.69661 4.78724 4.83046 4.88092 4.93042 4.94604 4.96152 5.05839 5.08114 5.12605 5.20570 5.23126 5.32206 5.34564 5.40827 5.45943 5.49959 5.57381 5.70534 6.29879 6.65592 7.22535 7.37150 8.11098 8.34872 9.31689 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.003353 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.268392 B = 8349.813599 C = 8627.526140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.129 3.871 3 H 0.077 0.923 4 C 0.162 3.838 5 H 0.072 0.928 6 N -0.725 5.725 7 C -0.236 4.236 8 H 0.080 0.920 9 C -0.074 4.074 10 N -0.970 5.970 11 Si 0.970 3.030 12 H -0.301 1.301 13 H -0.281 1.281 14 H -0.276 1.276 15 C -0.147 4.147 16 C 0.109 3.891 17 N -0.610 5.610 18 C 0.517 3.483 19 O -0.588 6.588 20 C -0.125 4.125 21 C -0.087 4.087 22 C -0.106 4.106 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.140 4.140 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.376 0.624 30 H 0.249 0.751 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.586 2.527 17.236 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.024 3.976 3 H 0.095 0.905 4 C 0.052 3.948 5 H 0.090 0.910 6 N -0.366 5.366 7 C -0.368 4.368 8 H 0.098 0.902 9 C -0.266 4.266 10 N -0.620 5.620 11 Si 0.800 3.200 12 H -0.228 1.228 13 H -0.207 1.207 14 H -0.202 1.202 15 C -0.188 4.188 16 C -0.013 4.013 17 N -0.344 5.344 18 C 0.308 3.692 19 O -0.469 6.469 20 C -0.164 4.164 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.181 4.181 24 C -0.176 4.176 25 C -0.178 4.178 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.211 0.789 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.263 3.042 17.257 20.831 hybrid contribution -0.969 -0.486 -1.073 1.525 sum 10.294 2.557 16.184 19.350 Atomic orbital electron populations 1.21737 0.95983 1.00826 1.00738 1.21820 0.93959 0.96177 0.85602 0.90506 1.21418 0.89401 0.91302 0.92642 0.91046 1.42670 1.33895 1.52061 1.07970 1.19599 1.10105 1.19714 0.87364 0.90189 1.25494 0.98299 1.01185 1.01605 1.69818 1.19629 1.36688 1.35911 0.85258 0.76751 0.77447 0.80553 1.22801 1.20716 1.20220 1.23362 0.98561 1.01746 0.95130 1.22346 0.95174 0.87416 0.96363 1.48779 1.51952 1.28821 1.04823 1.21174 0.79835 0.85170 0.83024 1.90640 1.42142 1.30206 1.83880 1.21684 1.03411 0.99734 0.91593 1.21252 1.00166 0.98977 0.92139 1.22591 1.00301 0.96112 0.93440 1.23047 0.99621 0.98550 0.96924 1.22844 1.02028 0.96487 0.96277 1.22943 1.01901 0.96852 0.96063 0.94144 0.93340 0.92545 0.78948 0.94231 0.90678 0.88990 0.87450 0.92887 0.88057 0.86385 0.92277 0.93317 0.87676 0.91208 0.90887 0.89158 0.91527 0.90761 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.49 71.98 0.61 -4.77 16 2 C 0.13 4.53 3.42 45.34 0.16 4.69 16 3 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 4 C 0.16 5.98 3.48 46.18 0.16 6.14 16 5 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 6 N -0.72 -34.40 4.55 -317.34 -1.44 -35.84 16 7 C -0.24 -12.40 9.96 84.03 0.84 -11.56 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 9 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 10 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 11 Si 0.97 45.00 29.55 68.60 2.03 47.02 16 12 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 15 C -0.15 -4.32 6.77 31.99 0.22 -4.10 16 16 C 0.11 2.93 6.67 86.86 0.58 3.51 16 17 N -0.61 -18.94 3.07 -788.04 -2.42 -21.36 16 18 C 0.52 15.97 7.64 87.66 0.67 16.64 16 19 O -0.59 -22.60 15.03 -3.03 -0.05 -22.65 16 20 C -0.12 -2.62 4.70 29.85 0.14 -2.48 16 21 C -0.09 -1.84 4.33 30.59 0.13 -1.71 16 22 C -0.11 -1.66 3.64 -10.27 -0.04 -1.69 16 23 C -0.14 -2.25 7.65 31.18 0.24 -2.01 16 24 C -0.14 -1.87 8.09 31.18 0.25 -1.62 16 25 C -0.14 -2.08 7.65 31.12 0.24 -1.84 16 26 H 0.04 1.80 6.24 -2.39 -0.01 1.79 16 27 H 0.05 1.95 6.91 -2.39 -0.02 1.93 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.38 19.65 5.69 -92.71 -0.53 19.13 16 30 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.11 2.00 7.48 -2.39 -0.02 1.99 16 34 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.12 1.81 7.85 -2.38 -0.02 1.79 16 37 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 38 H 0.05 1.23 7.83 -2.38 -0.02 1.21 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.25 7.92 -2.39 -0.02 1.24 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 1.19 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -65.63 354.46 3.49 -62.14 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.42 Total: 33.04 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.66 Total: -4.44 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -3.58 Total: -115.12 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -65.63 3.49 -62.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986118310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.510 kcal (2) G-P(sol) polarization free energy of solvation -65.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds