Wall clock time and date at job start Tue Mar 31 2020 02:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.99658 * 2 1 4 4 C 1.54315 * 109.88348 * 238.90606 * 2 1 3 5 5 H 1.09006 * 110.72111 * 336.93033 * 4 2 1 6 6 N 1.46499 * 110.72235 * 100.02475 * 4 2 1 7 7 C 1.36935 * 119.99938 * 202.55804 * 6 4 2 8 8 H 1.08000 * 120.00518 * 359.72965 * 7 6 4 9 9 C 1.38817 * 119.99990 * 179.97438 * 7 6 4 10 10 N 1.31617 * 119.99869 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99909 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.46676 * 90.00727 * 11 9 7 13 13 H 1.48502 * 109.46977 * 210.00025 * 11 9 7 14 14 H 1.48494 * 109.47494 * 330.00753 * 11 9 7 15 15 C 1.55152 * 103.10291 * 218.47881 * 4 2 1 16 16 C 1.54907 * 101.58366 * 35.41269 * 15 4 2 17 17 N 1.47321 * 110.06373 * 121.16934 * 2 1 3 18 18 C 1.34776 * 125.61948 * 298.25177 * 17 2 1 19 19 O 1.21287 * 119.99623 * 359.83277 * 18 17 2 20 20 C 1.50691 * 120.00206 * 179.83323 * 18 17 2 21 21 C 1.53778 * 113.61555 * 279.13586 * 20 18 17 22 22 C 1.53958 * 87.02192 * 220.04698 * 21 20 18 23 23 C 1.52997 * 113.53735 * 270.81333 * 22 21 20 24 24 C 1.52993 * 113.74527 * 139.94128 * 22 21 20 25 25 C 1.53782 * 87.11006 * 25.36407 * 22 21 20 26 26 H 1.09007 * 109.46980 * 181.09751 * 1 2 3 27 27 H 1.08999 * 109.47348 * 301.09515 * 1 2 3 28 28 H 1.08993 * 109.47329 * 61.09478 * 1 2 3 29 29 H 0.96999 * 119.99984 * 22.55739 * 6 4 2 30 30 H 0.96996 * 119.99743 * 179.97438 * 10 9 7 31 31 H 1.09007 * 111.00738 * 153.48590 * 15 4 2 32 32 H 1.08995 * 111.00472 * 277.33599 * 15 4 2 33 33 H 1.08993 * 110.37220 * 81.83002 * 16 15 4 34 34 H 1.09001 * 110.37051 * 204.04807 * 16 15 4 35 35 H 1.09006 * 112.85139 * 50.33360 * 20 18 17 36 36 H 1.09000 * 113.61398 * 334.56432 * 21 20 18 37 37 H 1.08999 * 113.61309 * 105.47113 * 21 20 18 38 38 H 1.08999 * 109.47028 * 157.48939 * 23 22 21 39 39 H 1.08999 * 109.47436 * 277.49321 * 23 22 21 40 40 H 1.09000 * 109.47490 * 37.49333 * 23 22 21 41 41 H 1.09003 * 109.47422 * 322.40983 * 24 22 21 42 42 H 1.09004 * 109.47380 * 82.40454 * 24 22 21 43 43 H 1.09001 * 109.47578 * 202.40249 * 24 22 21 44 44 H 1.09004 * 113.61774 * 220.09271 * 25 22 21 45 45 H 1.09000 * 113.69538 * 89.19677 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2427 5 1 1.3039 -1.4436 -1.6201 6 7 2.4554 0.1961 -2.2875 7 6 2.5063 -0.2089 -3.5945 8 1 2.2554 -1.2266 -3.8547 9 6 2.8854 0.6872 -4.5846 10 7 3.1964 1.9260 -4.2669 11 14 2.9555 0.1345 -6.3676 12 1 1.6367 0.3663 -7.0098 13 1 3.9988 0.9099 -7.0855 14 1 3.2865 -1.3120 -6.4248 15 6 3.2869 -1.5176 -0.6958 16 6 2.8161 -1.8831 0.7341 17 7 2.0354 -0.7162 1.1840 18 6 1.8176 -0.3641 2.4666 19 8 1.1572 0.6208 2.7213 20 6 2.3945 -1.1941 3.5842 21 6 1.5683 -2.4499 3.9087 22 6 1.8512 -2.1544 5.3930 23 6 3.1364 -2.8030 5.9109 24 6 0.6509 -2.3996 6.3095 25 6 2.0249 -0.6816 4.9863 26 1 -0.3633 -1.0275 0.0197 27 1 -0.3634 0.5307 0.8800 28 1 -0.3633 0.4967 -0.8996 29 1 2.6846 1.1091 -2.0533 30 1 3.4616 2.5521 -4.9587 31 1 3.4811 -2.4144 -1.2843 32 1 4.1663 -0.8744 -0.6651 33 1 2.1880 -2.7735 0.7107 34 1 3.6743 -2.0420 1.3871 35 1 3.4590 -1.3923 3.4584 36 1 0.5159 -2.3619 3.6389 37 1 2.0218 -3.3749 3.5527 38 1 3.4877 -2.2621 6.7897 39 1 2.9376 -3.8407 6.1785 40 1 3.8998 -2.7681 5.1337 41 1 -0.2632 -2.0926 5.8012 42 1 0.5915 -3.4600 6.5547 43 1 0.7691 -1.8210 7.2257 44 1 2.8465 -0.1810 5.4988 45 1 1.0984 -0.1080 5.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986233656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:14 Heat of formation + Delta-G solvation = -14.617494 kcal Electronic energy + Delta-G solvation = -22730.179299 eV Core-core repulsion = 19555.022800 eV Total energy + Delta-G solvation = -3175.156499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.67331 -38.93480 -37.03573 -34.10028 -31.87829 -31.01446 -30.67257 -29.01033 -27.67613 -25.88970 -25.18800 -24.46161 -22.98657 -21.85117 -20.02927 -18.64614 -18.38598 -17.25562 -16.95628 -15.90785 -15.39728 -15.05813 -14.59616 -14.38174 -13.96048 -13.70129 -13.37373 -13.35325 -13.22685 -12.95460 -12.78973 -12.55057 -12.10471 -12.06763 -11.85335 -11.77091 -11.57762 -11.27400 -11.14541 -11.04521 -10.92623 -10.83629 -10.60461 -10.47072 -10.28062 -10.24212 -10.01386 -9.76339 -9.35256 -8.94972 -8.34371 -7.03697 -5.82172 -3.12585 2.84179 3.21974 3.40523 3.45802 3.47482 4.22601 4.36824 4.47636 4.54409 4.59468 4.82471 5.00879 5.07549 5.21808 5.31181 5.37185 5.39021 5.43902 5.50656 5.54367 5.59792 5.62811 5.65252 5.68540 5.71773 5.78301 5.81118 5.90621 5.94243 5.98393 6.10999 6.14175 6.17242 6.31077 6.32788 6.47347 6.59452 6.62810 6.77365 6.93157 7.64885 7.84605 8.34990 8.43739 9.46614 10.01450 10.36198 11.40054 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.039840 B = 0.003444 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.639831 B = 8128.801140 C = 8367.069106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.076 0.924 4 C 0.176 3.824 5 H 0.065 0.935 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.156 4.156 16 C 0.101 3.899 17 N -0.608 5.608 18 C 0.535 3.465 19 O -0.545 6.545 20 C -0.132 4.132 21 C -0.112 4.112 22 C -0.091 4.091 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.108 4.108 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.386 0.614 30 H 0.256 0.744 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 -11.200 19.113 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 H 0.094 0.906 4 C 0.064 3.936 5 H 0.083 0.917 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.198 4.198 16 C -0.022 4.022 17 N -0.341 5.341 18 C 0.323 3.677 19 O -0.423 6.423 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.091 4.091 23 C -0.185 4.185 24 C -0.192 4.192 25 C -0.145 4.145 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.220 0.780 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.785 -10.709 19.124 21.991 hybrid contribution 0.326 0.005 -1.073 1.122 sum -1.460 -10.704 18.050 21.036 Atomic orbital electron populations 1.22020 0.94970 1.01461 1.02619 1.21965 0.94338 0.96884 0.84616 0.90595 1.21238 0.93509 0.91586 0.87226 0.91710 1.42353 1.80255 1.10476 1.02431 1.19208 1.38994 0.95939 0.83328 0.91004 1.24770 1.02009 0.95766 0.98134 1.69665 1.51836 1.03826 1.32423 0.86180 0.77312 0.77589 0.85007 1.21645 1.21761 1.20701 1.23569 1.01403 1.01678 0.93123 1.22333 0.94591 0.88310 0.96960 1.48674 1.52034 1.28377 1.05040 1.20096 0.80398 0.84998 0.82196 1.90661 1.40760 1.27682 1.83231 1.22675 1.01055 0.97566 0.94059 1.23008 1.00284 0.96325 0.95343 1.21826 0.96192 0.96507 0.94589 1.21603 0.95699 1.00221 1.01015 1.21710 0.96933 1.01330 0.99184 1.22954 1.02898 0.95503 0.93171 0.93198 0.92105 0.91200 0.78000 0.93369 0.90634 0.90707 0.91852 0.91493 0.87329 0.89721 0.90784 0.92293 0.92364 0.92338 0.92428 0.92683 0.92504 0.91199 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.11 37.16 0.34 -2.28 16 2 C 0.13 2.27 3.22 -66.79 -0.21 2.06 16 3 H 0.08 1.56 7.70 -51.93 -0.40 1.16 16 4 C 0.18 3.39 3.12 -66.10 -0.21 3.19 16 5 H 0.07 1.25 7.81 -51.93 -0.41 0.84 16 6 N -0.71 -17.43 5.24 -51.66 -0.27 -17.70 16 7 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 11 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C -0.16 -2.55 6.77 -24.59 -0.17 -2.72 16 16 C 0.10 1.33 6.69 -2.53 -0.02 1.32 16 17 N -0.61 -9.49 3.08 -162.80 -0.50 -9.99 16 18 C 0.53 8.35 7.17 -10.99 -0.08 8.27 16 19 O -0.55 -10.43 14.99 5.55 0.08 -10.34 16 20 C -0.13 -1.50 2.93 -90.96 -0.27 -1.77 16 21 C -0.11 -1.06 6.76 -25.83 -0.17 -1.24 16 22 C -0.09 -0.78 1.39 -153.61 -0.21 -0.99 16 23 C -0.13 -0.91 9.07 37.16 0.34 -0.57 16 24 C -0.13 -1.05 9.20 37.15 0.34 -0.71 16 25 C -0.11 -1.14 6.55 -25.91 -0.17 -1.31 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.08 6.94 -51.93 -0.36 0.72 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.39 10.19 7.53 -40.82 -0.31 9.88 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.74 7.28 -51.93 -0.38 0.36 16 35 H 0.11 1.09 7.06 -51.93 -0.37 0.73 16 36 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.41 7.34 -51.93 -0.38 0.03 16 41 H 0.06 0.48 7.96 -51.93 -0.41 0.07 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.09 1.18 7.41 -51.93 -0.38 0.79 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -30.65 355.25 -8.37 -39.02 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.00 Total: 7.59 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.74 Total: -3.84 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.05 Total: -54.69 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.65 -8.37 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986233656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.400 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds