Wall clock time and date at job start Tue Mar 31 2020 02:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.99658 * 2 1 4 4 C 1.54315 * 109.88348 * 238.90606 * 2 1 3 5 5 H 1.09006 * 110.72111 * 336.93033 * 4 2 1 6 6 N 1.46499 * 110.72235 * 100.02475 * 4 2 1 7 7 C 1.36935 * 119.99938 * 202.55804 * 6 4 2 8 8 H 1.08000 * 120.00518 * 359.72965 * 7 6 4 9 9 C 1.38817 * 119.99990 * 179.97438 * 7 6 4 10 10 N 1.31617 * 119.99869 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99909 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.46676 * 90.00727 * 11 9 7 13 13 H 1.48502 * 109.46977 * 210.00025 * 11 9 7 14 14 H 1.48494 * 109.47494 * 330.00753 * 11 9 7 15 15 C 1.55152 * 103.10291 * 218.47881 * 4 2 1 16 16 C 1.54907 * 101.58366 * 35.41269 * 15 4 2 17 17 N 1.47321 * 110.06373 * 121.16934 * 2 1 3 18 18 C 1.34776 * 125.61948 * 298.25177 * 17 2 1 19 19 O 1.21287 * 119.99623 * 359.83277 * 18 17 2 20 20 C 1.50691 * 120.00206 * 179.83323 * 18 17 2 21 21 C 1.53778 * 113.61555 * 279.13586 * 20 18 17 22 22 C 1.53958 * 87.02192 * 220.04698 * 21 20 18 23 23 C 1.52997 * 113.53735 * 270.81333 * 22 21 20 24 24 C 1.52993 * 113.74527 * 139.94128 * 22 21 20 25 25 C 1.53782 * 87.11006 * 25.36407 * 22 21 20 26 26 H 1.09007 * 109.46980 * 181.09751 * 1 2 3 27 27 H 1.08999 * 109.47348 * 301.09515 * 1 2 3 28 28 H 1.08993 * 109.47329 * 61.09478 * 1 2 3 29 29 H 0.96999 * 119.99984 * 22.55739 * 6 4 2 30 30 H 0.96996 * 119.99743 * 179.97438 * 10 9 7 31 31 H 1.09007 * 111.00738 * 153.48590 * 15 4 2 32 32 H 1.08995 * 111.00472 * 277.33599 * 15 4 2 33 33 H 1.08993 * 110.37220 * 81.83002 * 16 15 4 34 34 H 1.09001 * 110.37051 * 204.04807 * 16 15 4 35 35 H 1.09006 * 112.85139 * 50.33360 * 20 18 17 36 36 H 1.09000 * 113.61398 * 334.56432 * 21 20 18 37 37 H 1.08999 * 113.61309 * 105.47113 * 21 20 18 38 38 H 1.08999 * 109.47028 * 157.48939 * 23 22 21 39 39 H 1.08999 * 109.47436 * 277.49321 * 23 22 21 40 40 H 1.09000 * 109.47490 * 37.49333 * 23 22 21 41 41 H 1.09003 * 109.47422 * 322.40983 * 24 22 21 42 42 H 1.09004 * 109.47380 * 82.40454 * 24 22 21 43 43 H 1.09001 * 109.47578 * 202.40249 * 24 22 21 44 44 H 1.09004 * 113.61774 * 220.09271 * 25 22 21 45 45 H 1.09000 * 113.69538 * 89.19677 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2427 5 1 1.3039 -1.4436 -1.6201 6 7 2.4554 0.1961 -2.2875 7 6 2.5063 -0.2089 -3.5945 8 1 2.2554 -1.2266 -3.8547 9 6 2.8854 0.6872 -4.5846 10 7 3.1964 1.9260 -4.2669 11 14 2.9555 0.1345 -6.3676 12 1 1.6367 0.3663 -7.0098 13 1 3.9988 0.9099 -7.0855 14 1 3.2865 -1.3120 -6.4248 15 6 3.2869 -1.5176 -0.6958 16 6 2.8161 -1.8831 0.7341 17 7 2.0354 -0.7162 1.1840 18 6 1.8176 -0.3641 2.4666 19 8 1.1572 0.6208 2.7213 20 6 2.3945 -1.1941 3.5842 21 6 1.5683 -2.4499 3.9087 22 6 1.8512 -2.1544 5.3930 23 6 3.1364 -2.8030 5.9109 24 6 0.6509 -2.3996 6.3095 25 6 2.0249 -0.6816 4.9863 26 1 -0.3633 -1.0275 0.0197 27 1 -0.3634 0.5307 0.8800 28 1 -0.3633 0.4967 -0.8996 29 1 2.6846 1.1091 -2.0533 30 1 3.4616 2.5521 -4.9587 31 1 3.4811 -2.4144 -1.2843 32 1 4.1663 -0.8744 -0.6651 33 1 2.1880 -2.7735 0.7107 34 1 3.6743 -2.0420 1.3871 35 1 3.4590 -1.3923 3.4584 36 1 0.5159 -2.3619 3.6389 37 1 2.0218 -3.3749 3.5527 38 1 3.4877 -2.2621 6.7897 39 1 2.9376 -3.8407 6.1785 40 1 3.8998 -2.7681 5.1337 41 1 -0.2632 -2.0926 5.8012 42 1 0.5915 -3.4600 6.5547 43 1 0.7691 -1.8210 7.2257 44 1 2.8465 -0.1810 5.4988 45 1 1.0984 -0.1080 5.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986233656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:13 Heat of formation + Delta-G solvation = -32.724870 kcal Electronic energy + Delta-G solvation = -22730.964493 eV Core-core repulsion = 19555.022800 eV Total energy + Delta-G solvation = -3175.941693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72897 -40.05267 -38.36603 -35.90405 -33.46018 -32.40694 -31.72335 -30.56360 -28.22202 -26.87613 -26.66189 -25.59258 -24.67627 -23.05943 -21.52432 -19.86662 -19.18762 -19.09695 -18.15453 -17.25888 -16.58139 -16.48074 -15.83301 -15.52618 -15.32589 -14.96600 -14.78427 -14.59696 -14.29355 -14.05203 -13.73139 -13.54081 -13.53120 -13.28622 -13.11857 -12.92247 -12.71125 -12.62844 -12.55691 -12.40348 -12.19327 -12.08516 -12.00016 -11.73561 -11.70509 -11.55650 -11.23662 -10.99544 -10.92070 -10.56754 -9.64675 -9.03344 -7.94353 -5.24586 1.49127 1.50792 1.59045 1.63820 1.98334 2.57450 3.36171 3.45481 3.52238 3.64012 3.73889 3.76994 3.80014 3.98800 4.12620 4.19383 4.34231 4.40244 4.41884 4.49822 4.55327 4.65699 4.72563 4.75166 4.79483 4.89763 4.91910 4.92571 4.97989 5.03586 5.07534 5.19201 5.21387 5.23241 5.25237 5.26693 5.36983 5.46720 5.49831 5.54446 5.64624 6.25850 6.62583 7.19697 7.32077 8.04103 8.28113 9.29306 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.039840 B = 0.003444 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.639831 B = 8128.801140 C = 8367.069106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.130 3.870 3 H 0.040 0.960 4 C 0.171 3.829 5 H 0.071 0.929 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.084 0.916 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.289 1.289 13 H -0.299 1.299 14 H -0.264 1.264 15 C -0.148 4.148 16 C 0.109 3.891 17 N -0.608 5.608 18 C 0.528 3.472 19 O -0.590 6.590 20 C -0.128 4.128 21 C -0.106 4.106 22 C -0.079 4.079 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.115 4.115 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.370 0.630 30 H 0.250 0.750 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 -14.647 20.251 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.058 0.942 4 C 0.061 3.939 5 H 0.088 0.912 6 N -0.369 5.369 7 C -0.368 4.368 8 H 0.102 0.898 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.217 1.217 13 H -0.226 1.226 14 H -0.188 1.188 15 C -0.189 4.189 16 C -0.013 4.013 17 N -0.341 5.341 18 C 0.319 3.681 19 O -0.470 6.470 20 C -0.149 4.149 21 C -0.144 4.144 22 C -0.079 4.079 23 C -0.184 4.184 24 C -0.192 4.192 25 C -0.153 4.153 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.202 0.798 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.177 -14.237 20.296 24.820 hybrid contribution 0.089 1.090 -1.339 1.729 sum -1.088 -13.148 18.957 23.096 Atomic orbital electron populations 1.21902 0.94393 1.02306 1.01401 1.21672 0.94735 0.95327 0.85711 0.94185 1.21434 0.95042 0.91026 0.86415 0.91159 1.42535 1.80656 1.10689 1.03031 1.19635 1.36707 0.96163 0.84330 0.89814 1.25597 1.03041 0.95967 1.02272 1.69838 1.54104 1.05107 1.33235 0.85126 0.76721 0.77809 0.80005 1.21674 1.22637 1.18845 1.23385 0.98863 1.01210 0.95448 1.22489 0.95876 0.87889 0.95088 1.48754 1.52119 1.28831 1.04420 1.20980 0.79657 0.84756 0.82757 1.90643 1.42776 1.29786 1.83844 1.22810 1.02204 0.97826 0.92074 1.23013 0.99336 0.96122 0.95885 1.21794 0.97338 0.94492 0.94294 1.21618 0.94669 1.00792 1.01302 1.21716 0.96163 1.02299 0.99053 1.22975 1.01945 0.97068 0.93303 0.91206 0.93213 0.92482 0.79826 0.94120 0.89178 0.92718 0.88951 0.88259 0.85098 0.91046 0.88394 0.91930 0.91093 0.91779 0.93556 0.91227 0.92186 0.90619 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.11 71.98 0.66 -4.27 16 2 C 0.13 4.77 3.22 45.28 0.15 4.92 16 3 H 0.04 1.75 7.70 -2.38 -0.02 1.73 16 4 C 0.17 6.47 3.12 46.18 0.14 6.61 16 5 H 0.07 2.60 7.81 -2.38 -0.02 2.58 16 6 N -0.73 -36.23 5.24 -317.34 -1.66 -37.89 16 7 C -0.24 -12.70 9.97 84.04 0.84 -11.87 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 10 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 11 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 13 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 14 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 15 C -0.15 -4.54 6.77 31.98 0.22 -4.33 16 16 C 0.11 2.47 6.69 86.85 0.58 3.05 16 17 N -0.61 -18.21 3.08 -787.37 -2.42 -20.63 16 18 C 0.53 16.09 7.17 87.65 0.63 16.72 16 19 O -0.59 -23.15 14.99 -3.05 -0.05 -23.19 16 20 C -0.13 -2.61 2.93 -11.02 -0.03 -2.64 16 21 C -0.11 -1.68 6.76 31.18 0.21 -1.47 16 22 C -0.08 -1.13 1.39 -51.60 -0.07 -1.20 16 23 C -0.13 -1.31 9.07 71.98 0.65 -0.65 16 24 C -0.14 -1.82 9.20 71.98 0.66 -1.16 16 25 C -0.12 -2.30 6.55 31.12 0.20 -2.10 16 26 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.05 1.82 6.94 -2.39 -0.02 1.81 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.37 20.43 7.53 -92.71 -0.70 19.73 16 30 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 1.70 7.28 -2.39 -0.02 1.68 16 35 H 0.13 2.11 7.06 -2.38 -0.02 2.10 16 36 H 0.07 1.35 7.93 -2.39 -0.02 1.33 16 37 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.61 7.34 -2.39 -0.02 0.59 16 41 H 0.05 0.72 7.96 -2.39 -0.02 0.70 16 42 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 1.39 8.10 -2.38 -0.02 1.38 16 45 H 0.07 1.76 7.41 -2.39 -0.02 1.74 16 Total: -1.00 -68.89 355.25 3.74 -65.16 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.25 Total: 30.85 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.30 Total: -2.27 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -3.80 Total: -117.93 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.89 3.74 -65.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986233656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.433 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds