Wall clock time and date at job start Tue Mar 31 2020 02:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.99758 * 2 1 4 4 C 1.54320 * 109.88578 * 121.10053 * 2 1 3 5 5 C 1.55158 * 102.94414 * 141.60898 * 4 2 1 6 6 H 1.09003 * 111.00321 * 206.38360 * 5 4 2 7 7 N 1.46497 * 111.00401 * 82.57532 * 5 4 2 8 8 C 1.36932 * 120.00214 * 154.99929 * 7 5 4 9 9 H 1.08000 * 120.00143 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00254 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99791 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00311 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46899 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47011 * 119.99904 * 12 10 8 15 15 H 1.48503 * 109.47162 * 239.99788 * 12 10 8 16 16 C 1.55130 * 101.48452 * 324.33534 * 5 4 2 17 17 N 1.47027 * 109.88070 * 238.90821 * 2 1 3 18 18 C 1.34780 * 125.64792 * 61.60981 * 17 2 1 19 19 O 1.21282 * 119.99926 * 359.97438 * 18 17 2 20 20 C 1.50697 * 119.99655 * 179.97438 * 18 17 2 21 21 C 1.53004 * 109.46862 * 179.97438 * 20 18 17 22 22 C 1.54894 * 110.48128 * 68.24509 * 21 20 18 23 23 C 1.55238 * 102.58338 * 156.67574 * 22 21 20 24 24 C 1.54266 * 104.23333 * 322.08174 * 23 22 21 25 25 C 1.53869 * 106.59800 * 23.61579 * 24 23 22 26 26 H 1.09009 * 109.47102 * 179.63540 * 1 2 3 27 27 H 1.08999 * 109.47426 * 299.63369 * 1 2 3 28 28 H 1.08999 * 109.47534 * 59.64057 * 1 2 3 29 29 H 1.08995 * 110.72271 * 259.97425 * 4 2 1 30 30 H 1.09008 * 110.71933 * 23.24925 * 4 2 1 31 31 H 0.97001 * 120.00018 * 334.99576 * 7 5 4 32 32 H 0.97003 * 119.99551 * 179.97438 * 11 10 8 33 33 H 1.09006 * 110.49367 * 278.44784 * 16 5 4 34 34 H 1.09002 * 110.33949 * 156.06588 * 16 5 4 35 35 H 1.09002 * 109.47212 * 60.00426 * 20 18 17 36 36 H 1.08991 * 109.47390 * 299.99580 * 20 18 17 37 37 H 1.09002 * 110.43542 * 305.70357 * 21 20 18 38 38 H 1.08996 * 110.75388 * 275.05927 * 22 21 20 39 39 H 1.08993 * 110.76071 * 38.44153 * 22 21 20 40 40 H 1.09005 * 110.46917 * 203.39204 * 23 22 21 41 41 H 1.09006 * 110.46947 * 80.77225 * 23 22 21 42 42 H 1.08999 * 110.03060 * 264.32313 * 24 23 22 43 43 H 1.09006 * 110.06829 * 142.91691 * 24 23 22 44 44 H 1.09001 * 110.02983 * 240.71432 * 25 24 23 45 45 H 1.08996 * 110.07773 * 119.30576 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6922 6 1 3.4856 -2.4108 1.2798 7 7 4.4674 -0.6469 0.6492 8 6 5.7217 -1.1940 0.6985 9 1 5.8412 -2.2650 0.7694 10 6 6.8395 -0.3721 0.6583 11 7 6.6939 0.9332 0.5724 12 14 8.5507 -1.1185 0.7248 13 1 8.4426 -2.5966 0.8186 14 1 9.2981 -0.7534 -0.5053 15 1 9.2715 -0.5989 1.9146 16 6 2.8098 -1.8824 -0.7371 17 7 2.0299 -0.7140 -1.1840 18 6 1.8073 -0.3618 -2.4658 19 8 1.1428 0.6209 -2.7180 20 6 2.3841 -1.1892 -3.5855 21 6 1.9849 -0.5771 -4.9298 22 6 2.6900 0.7867 -5.1350 23 6 2.6813 0.9429 -6.6795 24 6 2.9398 -0.4837 -7.2064 25 6 2.4970 -1.4501 -6.0939 26 1 -0.3634 -1.0277 -0.0065 27 1 -0.3634 0.5081 0.8932 28 1 -0.3634 0.5194 -0.8867 29 1 2.3529 -0.0462 2.0200 30 1 1.3051 -1.4461 1.6181 31 1 4.3601 0.3151 0.5859 32 1 7.4751 1.5076 0.5447 33 1 2.1801 -2.7718 -0.7117 34 1 3.6655 -2.0411 -1.3934 35 1 1.9986 -2.2067 -3.5213 36 1 3.4707 -1.2063 -3.5021 37 1 0.9028 -0.4598 -4.9882 38 1 2.1251 1.5889 -4.6600 39 1 3.7112 0.7547 -4.7556 40 1 3.4758 1.6174 -6.9989 41 1 1.7116 1.3057 -7.0205 42 1 4.0009 -0.6174 -7.4168 43 1 2.3552 -0.6607 -8.1092 44 1 3.3433 -2.0529 -5.7644 45 1 1.6973 -2.0962 -6.4560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987864871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:24 Heat of formation + Delta-G solvation = -47.483119 kcal Electronic energy + Delta-G solvation = -22974.248043 eV Core-core repulsion = 19797.666384 eV Total energy + Delta-G solvation = -3176.581659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.93195 -38.23720 -36.87182 -33.96655 -32.14244 -31.32662 -30.64065 -28.54919 -28.42687 -25.77961 -25.38404 -23.74076 -21.89076 -20.46781 -20.06949 -19.53391 -18.40440 -17.31265 -16.66608 -16.02369 -15.59189 -14.87600 -14.81504 -14.39937 -14.00649 -13.62913 -13.39234 -13.22834 -13.18724 -12.94484 -12.52076 -12.19558 -11.96536 -11.68620 -11.62837 -11.26797 -11.16570 -10.98384 -10.96805 -10.85345 -10.78444 -10.63548 -10.52901 -10.46433 -10.32421 -10.28412 -10.00562 -9.74502 -9.29645 -9.04268 -8.15330 -7.05643 -5.84729 -3.15244 3.09815 3.37908 3.43466 3.45087 3.46204 4.51114 4.62410 4.69981 4.79636 4.92840 5.16190 5.26799 5.31258 5.37452 5.43974 5.53403 5.53668 5.58941 5.67148 5.70096 5.71528 5.79055 5.82640 5.88289 5.90690 5.93094 5.98572 6.03021 6.11495 6.16874 6.21786 6.24854 6.39397 6.43307 6.45310 6.50647 6.59918 6.62811 6.71582 6.88426 7.62282 8.05105 8.32545 8.64698 9.44410 10.00189 10.34737 11.37254 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.005538 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.232494 B = 5055.158729 C = 6546.977778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.140 4.140 5 C 0.168 3.832 6 H 0.073 0.927 7 N -0.711 5.711 8 C -0.247 4.247 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.928 5.928 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.069 3.931 17 N -0.601 5.601 18 C 0.530 3.470 19 O -0.552 6.552 20 C -0.130 4.130 21 C -0.073 4.073 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.122 4.122 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 -5.552 -8.477 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.179 4.179 5 C 0.056 3.944 6 H 0.091 0.909 7 N -0.351 5.351 8 C -0.378 4.378 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.058 4.058 17 N -0.334 5.334 18 C 0.319 3.681 19 O -0.431 6.431 20 C -0.169 4.169 21 C -0.092 4.092 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.161 4.161 25 C -0.159 4.159 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.080 -5.109 -8.665 14.965 hybrid contribution 1.070 -0.130 0.006 1.078 sum -10.009 -5.239 -8.659 14.234 Atomic orbital electron populations 1.22120 0.95607 1.01562 1.02339 1.21442 0.93418 0.96705 0.84978 0.91024 1.23082 0.98269 1.00005 0.96498 1.21363 0.87019 0.94356 0.91679 0.90901 1.42335 1.00074 1.05516 1.87145 1.19283 0.83188 0.92046 1.43323 0.90904 1.24768 0.97942 0.95335 1.02480 1.69684 1.28959 1.02171 1.56708 0.86141 0.84744 0.78152 0.77249 1.20460 1.21845 1.21802 1.23416 0.94421 0.86912 1.01003 1.48464 1.51869 1.28406 1.04635 1.20237 0.80126 0.85257 0.82474 1.90617 1.41005 1.28027 1.83456 1.21715 1.02711 0.99452 0.93064 1.21719 1.00573 0.95022 0.91899 1.22627 1.00599 0.97451 0.94841 1.22420 1.01149 0.96392 0.96349 1.22110 1.00936 0.95188 0.97864 1.22218 1.00622 0.97795 0.95300 0.93028 0.92200 0.91629 0.89913 0.90897 0.78009 0.93416 0.92808 0.90354 0.89607 0.88696 0.90369 0.90408 0.91695 0.92005 0.91964 0.92012 0.92299 0.91637 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.10 37.15 0.34 -1.92 16 2 C 0.14 2.27 3.45 -66.96 -0.23 2.04 16 3 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 4 C -0.14 -2.16 6.07 -24.90 -0.15 -2.31 16 5 C 0.17 3.05 3.72 -65.66 -0.24 2.81 16 6 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 7 N -0.71 -16.80 5.24 -51.24 -0.27 -17.06 16 8 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 12 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 C 0.07 1.12 6.41 -2.41 -0.02 1.11 16 17 N -0.60 -10.23 3.06 -162.88 -0.50 -10.73 16 18 C 0.53 9.21 7.44 -10.99 -0.08 9.13 16 19 O -0.55 -10.87 13.64 5.56 0.08 -10.79 16 20 C -0.13 -1.83 4.06 -27.88 -0.11 -1.95 16 21 C -0.07 -0.97 2.45 -88.96 -0.22 -1.19 16 22 C -0.12 -1.68 5.72 -24.55 -0.14 -1.82 16 23 C -0.13 -1.47 6.84 -24.88 -0.17 -1.64 16 24 C -0.12 -1.30 6.80 -25.62 -0.17 -1.48 16 25 C -0.12 -1.33 6.37 -25.62 -0.16 -1.50 16 26 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.05 6.88 -51.93 -0.36 0.69 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 0.94 7.85 -51.92 -0.41 0.53 16 31 H 0.39 10.04 7.86 -40.82 -0.32 9.72 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.41 7.77 -51.93 -0.40 1.00 16 37 H 0.08 1.09 7.96 -51.93 -0.41 0.68 16 38 H 0.08 1.26 7.16 -51.93 -0.37 0.89 16 39 H 0.06 1.00 8.00 -51.93 -0.42 0.58 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.70 7.84 -51.93 -0.41 0.30 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -29.90 352.37 -9.39 -39.30 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.10 Total: 9.75 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.61 Total: -5.68 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.04 Total: -54.54 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.90 -9.39 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987864871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.185 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds